Wall clock time and date at job start Tue Mar 31 2020 01:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 119.99533 * 2 1 4 4 H 1.48505 * 109.46847 * 269.99575 * 3 2 1 5 5 H 1.48501 * 109.47361 * 29.99737 * 3 2 1 6 6 H 1.48501 * 109.47279 * 149.99946 * 3 2 1 7 7 C 1.38952 * 120.00592 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99693 * 0.02562 * 7 2 1 9 9 N 1.37094 * 119.99880 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99580 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00297 * 359.97438 * 10 9 7 12 12 C 1.50710 * 119.99962 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47076 * 180.02562 * 12 10 9 14 14 C 1.34779 * 119.99844 * 180.02562 * 13 12 10 15 15 O 1.21280 * 119.99819 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99872 * 179.97438 * 14 13 12 17 17 H 1.09002 * 110.46295 * 302.41191 * 16 14 13 18 18 C 1.54608 * 110.41411 * 64.83193 * 16 14 13 19 19 C 1.55981 * 104.46346 * 118.44382 * 18 16 14 20 20 H 1.09000 * 116.70612 * 161.25168 * 19 18 16 21 21 C 1.55953 * 104.30928 * 290.79701 * 19 18 16 22 22 C 1.52173 * 104.87533 * 70.37689 * 21 19 18 23 23 O 1.20763 * 127.33342 * 179.71523 * 22 21 19 24 24 C 1.53517 * 105.34021 * 359.69999 * 22 21 19 25 25 H 1.08997 * 115.84293 * 160.27951 * 24 22 21 26 26 C 1.56927 * 100.84154 * 34.04153 * 24 22 21 27 27 H 0.96998 * 120.00753 * 0.02562 * 1 2 3 28 28 H 0.96996 * 120.00562 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.46876 * 60.00129 * 12 10 9 30 30 H 1.09005 * 109.46642 * 300.00121 * 12 10 9 31 31 H 0.97000 * 120.00150 * 359.97438 * 13 12 10 32 32 H 1.09003 * 110.43708 * 359.70373 * 18 16 14 33 33 H 1.08995 * 110.53867 * 237.24333 * 18 16 14 34 34 H 1.09008 * 110.35895 * 311.52988 * 21 19 18 35 35 H 1.09003 * 110.45449 * 189.27420 * 21 19 18 36 36 H 1.08998 * 112.08931 * 63.26020 * 26 24 22 37 37 H 1.09004 * 112.08574 * 189.94515 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4453 2.6528 0.7000 6 1 3.5455 1.4404 0.7000 7 6 2.0090 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2031 0.0000 10 6 4.0538 -2.3703 0.0000 11 8 3.4475 -3.4207 0.0009 12 6 5.5609 -2.3702 0.0000 13 7 6.0493 -3.7514 -0.0006 14 6 7.3745 -3.9975 -0.0002 15 8 8.1625 -3.0756 0.0002 16 6 7.8769 -5.4183 -0.0003 17 1 7.4876 -5.9602 0.8617 18 6 7.4761 -6.1320 -1.3119 19 6 8.8339 -6.5111 -1.9796 20 1 8.8037 -7.2864 -2.7452 21 6 9.4460 -5.1434 -2.4119 22 6 9.8382 -4.4618 -1.1091 23 8 10.3554 -3.3787 -0.9761 24 6 9.4359 -5.4438 0.0002 25 1 9.9236 -5.2976 0.9640 26 6 9.7050 -6.8172 -0.7096 27 1 -0.4851 0.8400 -0.0004 28 1 3.8649 -0.3631 -0.0004 29 1 5.9242 -1.8564 0.8900 30 1 5.9242 -1.8563 -0.8900 31 1 5.4191 -4.4887 -0.0006 32 1 6.9111 -5.4572 -1.9550 33 1 6.8942 -7.0282 -1.0972 34 1 8.7044 -4.5471 -2.9436 35 1 10.3249 -5.3001 -3.0374 36 1 10.7580 -6.9512 -0.9573 37 1 9.3135 -7.6581 -0.1371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436173568.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:31 Heat of formation + Delta-G solvation = -98.783980 kcal Electronic energy + Delta-G solvation = -21863.693802 eV Core-core repulsion = 18413.221381 eV Total energy + Delta-G solvation = -3450.472420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.47012 -39.15123 -38.13460 -37.34918 -34.57884 -33.80131 -31.84445 -30.91374 -29.23030 -27.95530 -27.08306 -24.43860 -22.46231 -20.56125 -20.23156 -19.70129 -18.98157 -18.42328 -17.16421 -16.88555 -16.12711 -15.69827 -15.30746 -15.21077 -14.97757 -14.55734 -13.99361 -13.85253 -13.70505 -13.28400 -13.03529 -12.69563 -12.53862 -12.30167 -12.21847 -12.09186 -11.81620 -11.62118 -11.40345 -11.25181 -11.09012 -10.80770 -10.66327 -10.09156 -9.72862 -9.71925 -9.26257 -8.93362 -8.81141 -8.33566 -6.43662 -3.96401 2.12032 2.65347 2.97984 3.02808 3.10330 3.17711 3.52551 3.92606 4.01311 4.06421 4.09899 4.41299 4.51124 4.64771 4.81141 4.88028 4.95929 4.98996 5.11082 5.18385 5.40839 5.45416 5.46457 5.59139 5.63866 5.68184 5.72682 5.76901 5.77724 5.82635 5.88582 6.50746 7.40760 7.65877 7.68865 7.96917 8.29563 8.42583 8.78439 9.26706 9.59794 10.68389 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.034064 B = 0.003682 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.790330 B = 7603.026290 C = 8062.097631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.575 5.575 10 C 0.437 3.563 11 O -0.579 6.579 12 C 0.106 3.894 13 N -0.705 5.705 14 C 0.504 3.496 15 O -0.530 6.530 16 C -0.104 4.104 17 H 0.112 0.888 18 C -0.118 4.118 19 C -0.094 4.094 20 H 0.114 0.886 21 C -0.183 4.183 22 C 0.374 3.626 23 O -0.418 6.418 24 C -0.135 4.135 25 H 0.116 0.884 26 C -0.120 4.120 27 H 0.276 0.724 28 H 0.374 0.626 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.412 0.588 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.072 -12.799 -2.693 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.158 4.158 3 Si 0.704 3.296 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.440 4.440 8 H 0.139 0.861 9 N -0.213 5.213 10 C 0.223 3.777 11 O -0.464 6.464 12 C -0.022 4.022 13 N -0.359 5.359 14 C 0.289 3.711 15 O -0.407 6.407 16 C -0.126 4.126 17 H 0.130 0.870 18 C -0.156 4.156 19 C -0.112 4.112 20 H 0.132 0.868 21 C -0.221 4.221 22 C 0.246 3.754 23 O -0.287 6.287 24 C -0.154 4.154 25 H 0.134 0.866 26 C -0.158 4.158 27 H 0.087 0.913 28 H 0.208 0.792 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.250 0.750 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 18.245 -12.076 -2.624 22.036 hybrid contribution -0.011 1.126 0.100 1.130 sum 18.234 -10.950 -2.524 21.419 Atomic orbital electron populations 1.69610 1.05714 1.27872 1.48024 1.25063 0.95528 0.98172 0.97056 0.86680 0.79930 0.83764 0.79187 1.19355 1.19912 1.19237 1.19441 0.78938 0.96810 1.48772 0.86057 1.42129 1.07725 1.06158 1.65270 1.19622 0.88011 0.84898 0.85124 1.90532 1.69197 1.30871 1.55800 1.20983 0.93797 0.84086 1.03344 1.45678 1.06912 1.09147 1.74145 1.20601 0.82375 0.91329 0.76754 1.90839 1.54737 1.45855 1.49311 1.22317 0.95029 0.93870 1.01351 0.86961 1.22757 0.97426 1.00855 0.94583 1.23553 0.94452 0.96022 0.97219 0.86752 1.23234 1.02852 0.97541 0.98480 1.25012 0.73478 0.85347 0.91571 1.90394 1.32582 1.18941 1.86777 1.24042 0.94562 0.96578 1.00250 0.86578 1.23580 1.00266 0.95855 0.96074 0.91339 0.79228 0.89719 0.89805 0.74963 0.90427 0.89682 0.88728 0.88651 0.90325 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.85 13.96 55.50 0.77 -24.08 16 2 C 0.05 1.24 5.50 -17.47 -0.10 1.14 16 3 Si 0.88 19.07 27.74 -169.99 -4.71 14.35 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 7 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 8 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 9 N -0.58 -13.38 5.09 -10.96 -0.06 -13.43 16 10 C 0.44 9.54 7.85 -10.98 -0.09 9.46 16 11 O -0.58 -14.38 15.24 5.55 0.08 -14.30 16 12 C 0.11 1.84 6.15 -5.19 -0.03 1.80 16 13 N -0.70 -10.84 5.51 -61.47 -0.34 -11.18 16 14 C 0.50 7.36 6.55 -10.98 -0.07 7.29 16 15 O -0.53 -9.73 13.07 -17.42 -0.23 -9.95 16 16 C -0.10 -1.05 3.10 -89.37 -0.28 -1.32 16 17 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 18 C -0.12 -0.95 5.84 -24.29 -0.14 -1.09 16 19 C -0.09 -0.63 5.25 -85.27 -0.45 -1.07 16 20 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 21 C -0.18 -1.70 6.10 -25.57 -0.16 -1.86 16 22 C 0.37 4.85 5.22 -26.88 -0.14 4.71 16 23 O -0.42 -7.36 16.44 -16.98 -0.28 -7.64 16 24 C -0.13 -1.33 4.65 -86.67 -0.40 -1.73 16 25 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 26 C -0.12 -0.76 6.45 -22.42 -0.14 -0.91 16 27 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.37 7.75 5.76 -40.82 -0.24 7.51 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.41 6.14 7.44 -40.82 -0.30 5.83 16 32 H 0.08 0.74 7.43 -51.93 -0.39 0.35 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.96 7.84 -51.92 -0.41 0.55 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 308.03 15.07 4.64 4.64 Total: -1.00 -34.56 308.03 -6.95 -41.51 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -4.69 Total: 12.35 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -2.15 Total: 7.72 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.38 Total: -48.69 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.42 Total: -31.89 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.56 -6.95 -41.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436173568.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.270 kcal (2) G-P(sol) polarization free energy of solvation -34.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds