Wall clock time and date at job start Tue Mar 31 2020 01:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 119.99533 * 2 1 4 4 H 1.48505 * 109.46847 * 269.99575 * 3 2 1 5 5 H 1.48501 * 109.47361 * 29.99737 * 3 2 1 6 6 H 1.48501 * 109.47279 * 149.99946 * 3 2 1 7 7 C 1.38952 * 120.00592 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99693 * 0.02562 * 7 2 1 9 9 N 1.37094 * 119.99880 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99580 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00297 * 359.97438 * 10 9 7 12 12 C 1.50710 * 119.99962 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47076 * 180.02562 * 12 10 9 14 14 C 1.34779 * 119.99844 * 180.02562 * 13 12 10 15 15 O 1.21280 * 119.99819 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99872 * 179.97438 * 14 13 12 17 17 H 1.09002 * 110.46295 * 302.41191 * 16 14 13 18 18 C 1.54608 * 110.41411 * 64.83193 * 16 14 13 19 19 C 1.55981 * 104.46346 * 118.44382 * 18 16 14 20 20 H 1.09000 * 116.70612 * 161.25168 * 19 18 16 21 21 C 1.55953 * 104.30928 * 290.79701 * 19 18 16 22 22 C 1.52173 * 104.87533 * 70.37689 * 21 19 18 23 23 O 1.20763 * 127.33342 * 179.71523 * 22 21 19 24 24 C 1.53517 * 105.34021 * 359.69999 * 22 21 19 25 25 H 1.08997 * 115.84293 * 160.27951 * 24 22 21 26 26 C 1.56927 * 100.84154 * 34.04153 * 24 22 21 27 27 H 0.96998 * 120.00753 * 0.02562 * 1 2 3 28 28 H 0.96996 * 120.00562 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.46876 * 60.00129 * 12 10 9 30 30 H 1.09005 * 109.46642 * 300.00121 * 12 10 9 31 31 H 0.97000 * 120.00150 * 359.97438 * 13 12 10 32 32 H 1.09003 * 110.43708 * 359.70373 * 18 16 14 33 33 H 1.08995 * 110.53867 * 237.24333 * 18 16 14 34 34 H 1.09008 * 110.35895 * 311.52988 * 21 19 18 35 35 H 1.09003 * 110.45449 * 189.27420 * 21 19 18 36 36 H 1.08998 * 112.08931 * 63.26020 * 26 24 22 37 37 H 1.09004 * 112.08574 * 189.94515 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4453 2.6528 0.7000 6 1 3.5455 1.4404 0.7000 7 6 2.0090 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2031 0.0000 10 6 4.0538 -2.3703 0.0000 11 8 3.4475 -3.4207 0.0009 12 6 5.5609 -2.3702 0.0000 13 7 6.0493 -3.7514 -0.0006 14 6 7.3745 -3.9975 -0.0002 15 8 8.1625 -3.0756 0.0002 16 6 7.8769 -5.4183 -0.0003 17 1 7.4876 -5.9602 0.8617 18 6 7.4761 -6.1320 -1.3119 19 6 8.8339 -6.5111 -1.9796 20 1 8.8037 -7.2864 -2.7452 21 6 9.4460 -5.1434 -2.4119 22 6 9.8382 -4.4618 -1.1091 23 8 10.3554 -3.3787 -0.9761 24 6 9.4359 -5.4438 0.0002 25 1 9.9236 -5.2976 0.9640 26 6 9.7050 -6.8172 -0.7096 27 1 -0.4851 0.8400 -0.0004 28 1 3.8649 -0.3631 -0.0004 29 1 5.9242 -1.8564 0.8900 30 1 5.9242 -1.8563 -0.8900 31 1 5.4191 -4.4887 -0.0006 32 1 6.9111 -5.4572 -1.9550 33 1 6.8942 -7.0282 -1.0972 34 1 8.7044 -4.5471 -2.9436 35 1 10.3249 -5.3001 -3.0374 36 1 10.7580 -6.9512 -0.9573 37 1 9.3135 -7.6581 -0.1371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001436173568.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:30 Heat of formation + Delta-G solvation = -124.462666 kcal Electronic energy + Delta-G solvation = -21864.807313 eV Core-core repulsion = 18413.221381 eV Total energy + Delta-G solvation = -3451.585932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.34881 -40.67808 -39.60007 -38.33202 -36.33278 -35.38251 -33.86990 -31.80699 -29.99533 -29.20592 -27.98621 -26.23430 -23.42568 -21.52337 -21.37532 -21.11537 -20.60994 -19.67376 -18.33725 -17.69720 -17.50465 -17.03961 -16.79930 -16.65308 -16.24874 -15.95190 -15.34770 -15.11810 -14.83280 -14.54053 -14.34988 -14.12443 -13.86977 -13.79918 -13.42748 -13.02557 -12.98600 -12.48298 -12.46465 -12.30825 -12.05876 -12.03162 -11.68247 -11.61835 -11.45108 -10.88824 -10.69407 -10.37001 -10.23727 -10.16122 -8.48721 -6.10552 1.17144 1.27814 1.30701 1.40242 1.51583 1.75088 1.96022 2.16910 2.82594 3.07331 3.16624 3.36598 3.42848 3.68852 3.85285 3.97094 4.01968 4.16214 4.25138 4.32024 4.33589 4.40144 4.53130 4.75348 4.80560 4.92397 5.05354 5.10457 5.18071 5.20617 5.24409 5.33714 5.45063 5.84803 6.43335 6.46427 6.74513 6.75780 7.11856 7.26195 7.73101 8.67556 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.034064 B = 0.003682 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.790330 B = 7603.026290 C = 8062.097631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.005 4.005 3 Si 0.956 3.044 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.237 1.237 7 C -0.332 4.332 8 H 0.066 0.934 9 N -0.579 5.579 10 C 0.446 3.554 11 O -0.610 6.610 12 C 0.117 3.883 13 N -0.705 5.705 14 C 0.501 3.499 15 O -0.569 6.569 16 C -0.100 4.100 17 H 0.140 0.860 18 C -0.119 4.119 19 C -0.077 4.077 20 H 0.149 0.851 21 C -0.186 4.186 22 C 0.359 3.641 23 O -0.479 6.479 24 C -0.142 4.142 25 H 0.112 0.888 26 C -0.104 4.104 27 H 0.282 0.718 28 H 0.390 0.610 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.416 0.584 32 H 0.059 0.941 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.113 -14.027 -2.948 24.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.205 4.205 3 Si 0.776 3.224 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.161 1.161 7 C -0.461 4.461 8 H 0.084 0.916 9 N -0.218 5.218 10 C 0.234 3.766 11 O -0.496 6.496 12 C -0.011 4.011 13 N -0.360 5.360 14 C 0.289 3.711 15 O -0.449 6.449 16 C -0.121 4.121 17 H 0.157 0.843 18 C -0.157 4.157 19 C -0.095 4.095 20 H 0.166 0.834 21 C -0.224 4.224 22 C 0.235 3.765 23 O -0.353 6.353 24 C -0.162 4.162 25 H 0.130 0.870 26 C -0.141 4.141 27 H 0.092 0.908 28 H 0.226 0.774 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.254 0.746 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.099 0.901 35 H 0.131 0.869 36 H 0.109 0.891 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 20.294 -13.356 -2.881 24.465 hybrid contribution -0.669 1.393 0.176 1.555 sum 19.625 -11.963 -2.704 23.142 Atomic orbital electron populations 1.69762 1.07912 1.29487 1.49119 1.26011 0.96394 1.02402 0.95707 0.85486 0.79477 0.77371 0.80051 1.18121 1.19607 1.16067 1.19045 0.80844 0.95363 1.50832 0.91553 1.41957 1.06246 1.07416 1.66206 1.20415 0.89835 0.83931 0.82456 1.90517 1.70648 1.32098 1.56350 1.20831 0.89838 0.85908 1.04526 1.45729 1.07536 1.08248 1.74457 1.21485 0.81368 0.93090 0.75154 1.90843 1.55446 1.47658 1.50930 1.22459 0.94967 0.90885 1.03815 0.84251 1.22838 0.98484 1.01281 0.93065 1.23660 0.93000 0.94869 0.97937 0.83368 1.23320 1.03396 0.98780 0.96868 1.25925 0.71493 0.84742 0.94339 1.90354 1.35399 1.21542 1.88042 1.24156 0.94273 0.98104 0.99662 0.86995 1.23615 1.01193 0.94101 0.95240 0.90844 0.77392 0.88440 0.88586 0.74561 0.92247 0.86791 0.90079 0.86914 0.89138 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.06 13.96 21.66 0.30 -53.75 16 2 C 0.00 -0.26 5.50 84.93 0.47 0.21 16 3 Si 0.96 38.59 27.74 68.60 1.90 40.49 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 6 H -0.24 -8.34 6.52 99.48 0.65 -7.70 16 7 C -0.33 -18.83 10.16 84.04 0.85 -17.97 16 8 H 0.07 4.41 7.39 -2.91 -0.02 4.39 16 9 N -0.58 -26.85 5.09 -306.98 -1.56 -28.41 16 10 C 0.45 19.47 7.85 87.66 0.69 20.16 16 11 O -0.61 -30.86 15.24 -3.05 -0.05 -30.91 16 12 C 0.12 3.95 6.15 85.64 0.53 4.47 16 13 N -0.71 -21.01 5.51 -466.77 -2.57 -23.59 16 14 C 0.50 14.16 6.55 87.66 0.57 14.73 16 15 O -0.57 -20.94 13.07 18.94 0.25 -20.69 16 16 C -0.10 -1.77 3.10 -9.98 -0.03 -1.80 16 17 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 18 C -0.12 -1.51 5.84 32.17 0.19 -1.32 16 19 C -0.08 -0.70 5.25 -7.33 -0.04 -0.74 16 20 H 0.15 0.50 8.14 -2.39 -0.02 0.48 16 21 C -0.19 -3.12 6.10 31.34 0.19 -2.93 16 22 C 0.36 9.16 5.22 30.49 0.16 9.32 16 23 O -0.48 -17.53 16.44 20.51 0.34 -17.19 16 24 C -0.14 -2.53 4.65 -8.23 -0.04 -2.57 16 25 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 26 C -0.10 -0.87 6.45 33.38 0.22 -0.65 16 27 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 28 H 0.39 15.48 5.76 -92.71 -0.53 14.95 16 29 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 30 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 31 H 0.42 11.96 7.44 -92.71 -0.69 11.27 16 32 H 0.06 1.01 7.43 -2.39 -0.02 0.99 16 33 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 1.60 7.84 -2.38 -0.02 1.58 16 35 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 Total: -1.00 -81.21 308.03 2.20 -79.01 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: -0.16 Total: 34.15 kcal Atomic # 6 Polarization: 17.15 SS G_CDS: 3.76 Total: 20.90 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -3.83 Total: -105.75 kcal Atomic # 8 Polarization: -69.33 SS G_CDS: 0.54 Total: -68.79 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 1.90 Total: 40.49 kcal Total: -81.21 2.20 -79.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436173568.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.454 kcal (2) G-P(sol) polarization free energy of solvation -81.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds