Wall clock time and date at job start Tue Mar 31 2020 01:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99586 * 2 1 4 4 H 1.48499 * 109.46950 * 239.99686 * 3 2 1 5 5 H 1.48502 * 109.47400 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46983 * 120.00031 * 3 2 1 7 7 C 1.38810 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99690 * 197.36768 * 7 2 1 9 9 N 1.36928 * 120.00370 * 17.36949 * 7 2 1 10 10 C 1.46933 * 120.63084 * 27.66487 * 9 7 2 11 11 C 1.53182 * 108.77847 * 126.41094 * 10 9 7 12 12 C 1.53043 * 109.31457 * 54.63676 * 11 10 9 13 13 C 1.53045 * 109.53426 * 298.63738 * 12 11 10 14 14 H 1.08998 * 109.52252 * 301.38913 * 13 12 11 15 15 N 1.46503 * 109.49335 * 181.31532 * 13 12 11 16 16 C 1.34778 * 119.99841 * 155.15829 * 15 13 12 17 17 O 1.21286 * 120.00161 * 0.02562 * 16 15 13 18 18 C 1.50698 * 120.00216 * 179.97438 * 16 15 13 19 19 C 1.52998 * 109.47399 * 180.02562 * 18 16 15 20 20 F 1.39895 * 109.47086 * 60.00329 * 19 18 16 21 21 F 1.39899 * 109.47257 * 180.02562 * 19 18 16 22 22 F 1.39905 * 109.46997 * 300.00306 * 19 18 16 23 23 C 1.46921 * 120.63442 * 207.68469 * 9 7 2 24 24 H 0.97002 * 120.00654 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.58684 * 246.20382 * 10 9 7 26 26 H 1.09000 * 109.58339 * 6.62528 * 10 9 7 27 27 H 1.09000 * 109.49824 * 174.58796 * 11 10 9 28 28 H 1.09008 * 109.50059 * 294.65125 * 11 10 9 29 29 H 1.09001 * 109.46314 * 178.61348 * 12 11 10 30 30 H 1.08997 * 109.46050 * 58.65157 * 12 11 10 31 31 H 0.96998 * 120.00102 * 335.16052 * 15 13 12 32 32 H 1.09005 * 109.46983 * 60.00045 * 18 16 15 33 33 H 1.08999 * 109.47319 * 300.00352 * 18 16 15 34 34 H 1.08995 * 109.58817 * 113.79869 * 23 9 7 35 35 H 1.09000 * 109.58605 * 353.37531 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2798 9 7 1.3725 -2.3611 -0.3529 10 6 0.2279 -2.3349 -1.2739 11 6 0.5008 -3.3052 -2.4274 12 6 0.8187 -4.6903 -1.8593 13 6 2.0745 -4.6101 -0.9881 14 1 2.9086 -4.2407 -1.5845 15 7 2.3960 -5.9423 -0.4702 16 6 3.6624 -6.2412 -0.1189 17 8 4.5358 -5.4071 -0.2312 18 6 3.9931 -7.6113 0.4144 19 6 5.4873 -7.6869 0.7348 20 9 5.8074 -6.7226 1.6964 21 9 5.7943 -8.9591 1.2293 22 9 6.2264 -7.4485 -0.4289 23 6 1.8194 -3.6546 0.1818 24 1 -0.4851 0.8400 -0.0004 25 1 -0.6742 -2.6412 -0.7444 26 1 0.0986 -1.3267 -1.6674 27 1 -0.3800 -3.3676 -3.0665 28 1 1.3491 -2.9473 -3.0110 29 1 0.9892 -5.3886 -2.6787 30 1 -0.0203 -5.0366 -1.2559 31 1 1.6974 -6.6093 -0.3801 32 1 3.7433 -8.3628 -0.3347 33 1 3.4176 -7.7969 1.3212 34 1 1.0471 -4.0685 0.8300 35 1 2.7401 -3.5171 0.7487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479898816.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:06 Heat of formation + Delta-G solvation = -176.358322 kcal Electronic energy + Delta-G solvation = -22635.059214 eV Core-core repulsion = 18639.366177 eV Total energy + Delta-G solvation = -3995.693037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.13240 -47.68649 -47.52809 -39.82602 -37.44852 -34.44174 -32.68518 -31.82736 -30.49068 -28.60269 -25.31149 -24.35663 -22.23900 -21.98961 -20.45515 -19.49856 -18.70717 -18.59328 -17.58888 -16.76888 -16.62189 -15.53712 -15.40127 -14.72854 -14.52766 -14.39557 -14.09023 -13.96919 -13.72398 -13.71295 -13.65668 -13.55897 -13.21260 -12.67588 -12.44881 -12.39662 -12.12147 -11.83868 -11.13020 -10.93584 -10.78939 -10.30307 -10.27535 -10.13659 -9.93198 -9.69669 -9.65251 -8.95342 -8.42416 -6.69803 -5.79356 -3.21581 2.45879 2.52355 3.08475 3.41754 3.46109 3.49485 3.59333 3.92684 4.07051 4.51433 4.68578 4.83150 4.86269 5.22488 5.34740 5.49047 5.57728 5.64903 6.01458 6.07632 6.17773 6.45036 6.55052 6.58318 6.63222 6.78268 6.91061 7.32549 7.49750 7.62170 7.82590 8.16955 8.44745 9.21101 9.83188 10.38322 11.29417 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.024351 B = 0.004378 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.552453 B = 6394.593341 C = 7161.875377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.253 4.253 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.125 3.875 14 H 0.088 0.912 15 N -0.715 5.715 16 C 0.512 3.488 17 O -0.516 6.516 18 C -0.196 4.196 19 C 0.472 3.528 20 F -0.171 7.171 21 F -0.186 7.186 22 F -0.174 7.174 23 C 0.142 3.858 24 H 0.254 0.746 25 H 0.019 0.981 26 H 0.090 0.910 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.397 0.603 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.018 0.982 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.103 -18.209 -1.371 18.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.180 4.180 12 C -0.152 4.152 13 C 0.020 3.980 14 H 0.107 0.893 15 N -0.366 5.366 16 C 0.295 3.705 17 O -0.391 6.391 18 C -0.238 4.238 19 C 0.417 3.583 20 F -0.152 7.152 21 F -0.168 7.168 22 F -0.155 7.155 23 C 0.014 3.986 24 H 0.064 0.936 25 H 0.037 0.963 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.231 0.769 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.036 0.964 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.663 -17.408 -1.432 17.846 hybrid contribution 0.186 0.355 0.152 0.428 sum 3.849 -17.053 -1.280 17.529 Atomic orbital electron populations 1.70026 1.05254 1.25655 1.53935 1.25010 0.95284 0.98403 1.00780 0.86348 0.78914 0.83128 0.78296 1.20941 1.21620 1.20807 1.19187 0.92850 0.84677 1.41505 0.91553 1.43988 1.35619 1.01011 1.50362 1.20853 0.88557 0.98632 0.87857 1.22186 1.00520 0.95097 1.00173 1.21678 0.96601 0.98733 0.98225 1.21851 0.98051 0.80760 0.97366 0.89345 1.46021 1.08547 1.16290 1.65699 1.19703 0.83776 0.88015 0.78984 1.90865 1.46558 1.49077 1.52560 1.22988 0.92606 1.00657 1.07505 1.19730 0.90192 0.73328 0.75021 1.93242 1.94105 1.63664 1.64227 1.93186 1.94510 1.40879 1.88215 1.93224 1.79597 1.94123 1.48568 1.21180 0.98026 0.86885 0.92507 0.93588 0.96270 0.89201 0.92633 0.92365 0.93027 0.92155 0.76931 0.84678 0.84510 0.96438 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.12 11.19 55.49 0.62 -25.50 16 2 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 3 Si 0.90 22.05 29.59 -169.99 -5.03 17.02 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -7.08 9.59 -15.06 -0.14 -7.23 16 8 H 0.07 1.88 7.89 -52.49 -0.41 1.46 16 9 N -0.59 -14.73 2.99 -172.33 -0.52 -15.25 16 10 C 0.17 3.86 5.31 -3.71 -0.02 3.84 16 11 C -0.14 -2.52 6.08 -26.62 -0.16 -2.68 16 12 C -0.11 -1.72 5.35 -26.69 -0.14 -1.87 16 13 C 0.12 2.11 2.60 -67.81 -0.18 1.94 16 14 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 15 N -0.71 -8.98 5.08 -53.69 -0.27 -9.25 16 16 C 0.51 6.94 7.56 -10.99 -0.08 6.86 16 17 O -0.52 -9.69 14.50 5.55 0.08 -9.61 16 18 C -0.20 -1.67 5.75 -27.88 -0.16 -1.83 16 19 C 0.47 5.45 2.89 37.16 0.11 5.56 16 20 F -0.17 -2.45 16.40 2.25 0.04 -2.41 16 21 F -0.19 -1.91 17.32 2.25 0.04 -1.88 16 22 F -0.17 -2.38 16.40 2.25 0.04 -2.34 16 23 C 0.14 3.00 6.09 -3.71 -0.02 2.98 16 24 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 2.35 6.04 -51.93 -0.31 2.03 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.06 1.10 8.14 -51.92 -0.42 0.67 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.40 3.42 8.60 -40.82 -0.35 3.06 16 32 H 0.14 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.14 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 1.35 7.93 -51.93 -0.41 0.94 16 LS Contribution 302.41 15.07 4.56 4.56 Total: -1.00 -32.90 302.41 -5.74 -38.64 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -4.40 Total: -1.56 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -0.89 Total: 7.58 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.17 Total: -49.99 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 0.11 Total: -6.63 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.90 -5.74 -38.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479898816.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.720 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds