Wall clock time and date at job start Tue Mar 31 2020 01:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99586 * 2 1 4 4 H 1.48499 * 109.46950 * 239.99686 * 3 2 1 5 5 H 1.48502 * 109.47400 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46983 * 120.00031 * 3 2 1 7 7 C 1.38810 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99690 * 197.36768 * 7 2 1 9 9 N 1.36928 * 120.00370 * 17.36949 * 7 2 1 10 10 C 1.46933 * 120.63084 * 27.66487 * 9 7 2 11 11 C 1.53182 * 108.77847 * 126.41094 * 10 9 7 12 12 C 1.53043 * 109.31457 * 54.63676 * 11 10 9 13 13 C 1.53045 * 109.53426 * 298.63738 * 12 11 10 14 14 H 1.08998 * 109.52252 * 301.38913 * 13 12 11 15 15 N 1.46503 * 109.49335 * 181.31532 * 13 12 11 16 16 C 1.34778 * 119.99841 * 155.15829 * 15 13 12 17 17 O 1.21286 * 120.00161 * 0.02562 * 16 15 13 18 18 C 1.50698 * 120.00216 * 179.97438 * 16 15 13 19 19 C 1.52998 * 109.47399 * 180.02562 * 18 16 15 20 20 F 1.39895 * 109.47086 * 60.00329 * 19 18 16 21 21 F 1.39899 * 109.47257 * 180.02562 * 19 18 16 22 22 F 1.39905 * 109.46997 * 300.00306 * 19 18 16 23 23 C 1.46921 * 120.63442 * 207.68469 * 9 7 2 24 24 H 0.97002 * 120.00654 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.58684 * 246.20382 * 10 9 7 26 26 H 1.09000 * 109.58339 * 6.62528 * 10 9 7 27 27 H 1.09000 * 109.49824 * 174.58796 * 11 10 9 28 28 H 1.09008 * 109.50059 * 294.65125 * 11 10 9 29 29 H 1.09001 * 109.46314 * 178.61348 * 12 11 10 30 30 H 1.08997 * 109.46050 * 58.65157 * 12 11 10 31 31 H 0.96998 * 120.00102 * 335.16052 * 15 13 12 32 32 H 1.09005 * 109.46983 * 60.00045 * 18 16 15 33 33 H 1.08999 * 109.47319 * 300.00352 * 18 16 15 34 34 H 1.08995 * 109.58817 * 113.79869 * 23 9 7 35 35 H 1.09000 * 109.58605 * 353.37531 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2798 9 7 1.3725 -2.3611 -0.3529 10 6 0.2279 -2.3349 -1.2739 11 6 0.5008 -3.3052 -2.4274 12 6 0.8187 -4.6903 -1.8593 13 6 2.0745 -4.6101 -0.9881 14 1 2.9086 -4.2407 -1.5845 15 7 2.3960 -5.9423 -0.4702 16 6 3.6624 -6.2412 -0.1189 17 8 4.5358 -5.4071 -0.2312 18 6 3.9931 -7.6113 0.4144 19 6 5.4873 -7.6869 0.7348 20 9 5.8074 -6.7226 1.6964 21 9 5.7943 -8.9591 1.2293 22 9 6.2264 -7.4485 -0.4289 23 6 1.8194 -3.6546 0.1818 24 1 -0.4851 0.8400 -0.0004 25 1 -0.6742 -2.6412 -0.7444 26 1 0.0986 -1.3267 -1.6674 27 1 -0.3800 -3.3676 -3.0665 28 1 1.3491 -2.9473 -3.0110 29 1 0.9892 -5.3886 -2.6787 30 1 -0.0203 -5.0366 -1.2559 31 1 1.6974 -6.6093 -0.3801 32 1 3.7433 -8.3628 -0.3347 33 1 3.4176 -7.7969 1.3212 34 1 1.0471 -4.0685 0.8300 35 1 2.7401 -3.5171 0.7487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479898816.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:05 Heat of formation + Delta-G solvation = -199.594643 kcal Electronic energy + Delta-G solvation = -22636.066816 eV Core-core repulsion = 18639.366177 eV Total energy + Delta-G solvation = -3996.700639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.05104 -48.57263 -48.52596 -41.01980 -38.99695 -35.98307 -34.25009 -32.85464 -32.33942 -30.07789 -27.26161 -25.38666 -23.88787 -23.46787 -21.61571 -21.03557 -19.68142 -19.52048 -18.74178 -18.50889 -17.66100 -17.05049 -16.50848 -16.47110 -15.76013 -15.45374 -15.45092 -15.20460 -14.95410 -14.88527 -14.74508 -14.69919 -14.64201 -14.19867 -14.04367 -13.43070 -13.40625 -13.04623 -12.93036 -12.73483 -12.57116 -12.15050 -11.97540 -11.76336 -11.58582 -11.31251 -11.05133 -10.62066 -10.16209 -8.70164 -7.91684 -5.36659 1.43639 1.45791 1.49058 1.53358 1.58824 2.10802 2.49307 2.76007 3.09821 3.16606 3.22751 3.69038 3.81981 3.93327 4.11098 4.22243 4.26328 4.30160 4.48929 4.58223 4.82978 4.92423 5.03214 5.13399 5.15242 5.28537 5.45324 5.55165 5.62900 5.77014 6.35734 6.48359 7.12162 7.20510 7.82505 8.31137 9.13646 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.024351 B = 0.004378 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.552453 B = 6394.593341 C = 7161.875377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.041 4.041 3 Si 0.963 3.037 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.279 1.279 7 C -0.270 4.270 8 H 0.051 0.949 9 N -0.608 5.608 10 C 0.170 3.830 11 C -0.131 4.131 12 C -0.103 4.103 13 C 0.141 3.859 14 H 0.056 0.944 15 N -0.698 5.698 16 C 0.506 3.494 17 O -0.576 6.576 18 C -0.177 4.177 19 C 0.463 3.537 20 F -0.194 7.194 21 F -0.177 7.177 22 F -0.191 7.191 23 C 0.143 3.857 24 H 0.253 0.747 25 H 0.007 0.993 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.423 0.577 32 H 0.182 0.818 33 H 0.176 0.824 34 H 0.025 0.975 35 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.258 -20.741 -1.959 20.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.237 4.237 3 Si 0.791 3.209 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.205 1.205 7 C -0.400 4.400 8 H 0.069 0.931 9 N -0.332 5.332 10 C 0.045 3.955 11 C -0.171 4.171 12 C -0.141 4.141 13 C 0.034 3.966 14 H 0.075 0.925 15 N -0.350 5.350 16 C 0.292 3.708 17 O -0.455 6.455 18 C -0.217 4.217 19 C 0.409 3.591 20 F -0.175 7.175 21 F -0.159 7.159 22 F -0.172 7.172 23 C 0.016 3.984 24 H 0.062 0.938 25 H 0.025 0.975 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.261 0.739 32 H 0.200 0.800 33 H 0.193 0.807 34 H 0.043 0.957 35 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.791 -20.013 -2.019 20.307 hybrid contribution 0.480 1.100 0.390 1.262 sum 3.271 -18.913 -1.629 19.262 Atomic orbital electron populations 1.70149 1.06302 1.26079 1.54792 1.25671 0.96084 1.01079 1.00883 0.85421 0.77776 0.79540 0.78201 1.20648 1.21117 1.20543 1.19348 0.92575 0.86505 1.41613 0.93089 1.44218 1.36046 1.01560 1.51369 1.20733 0.87543 0.98200 0.89008 1.22024 1.01332 0.95500 0.98219 1.21607 0.95821 0.97497 0.99162 1.21281 0.98083 0.81936 0.95306 0.92524 1.45707 1.09311 1.15016 1.64970 1.20560 0.83084 0.89435 0.77696 1.90857 1.48305 1.51469 1.54861 1.23034 0.90357 0.97984 1.10347 1.20239 0.91704 0.73081 0.74104 1.93200 1.94457 1.64763 1.65106 1.93203 1.94608 1.40002 1.88043 1.93191 1.80344 1.94268 1.49444 1.21237 0.96486 0.86484 0.94162 0.93829 0.97507 0.92889 0.89672 0.93634 0.89143 0.90185 0.73912 0.80011 0.80679 0.95686 0.95350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.92 11.19 21.65 0.24 -54.68 16 2 C -0.04 -2.36 4.91 84.86 0.42 -1.94 16 3 Si 0.96 46.38 29.59 68.60 2.03 48.41 16 4 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.27 -15.71 9.59 84.03 0.81 -14.91 16 8 H 0.05 3.04 7.89 -2.91 -0.02 3.02 16 9 N -0.61 -31.33 2.99 -699.14 -2.09 -33.42 16 10 C 0.17 7.98 5.31 86.36 0.46 8.44 16 11 C -0.13 -4.51 6.08 30.67 0.19 -4.32 16 12 C -0.10 -2.75 5.35 30.62 0.16 -2.59 16 13 C 0.14 4.57 2.60 45.07 0.12 4.69 16 14 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 15 N -0.70 -15.43 5.08 -442.15 -2.25 -17.68 16 16 C 0.51 12.69 7.56 87.66 0.66 13.35 16 17 O -0.58 -21.83 14.50 -3.05 -0.04 -21.87 16 18 C -0.18 -2.33 5.75 29.85 0.17 -2.16 16 19 C 0.46 9.84 2.89 71.98 0.21 10.05 16 20 F -0.19 -5.48 16.40 44.97 0.74 -4.75 16 21 F -0.18 -3.20 17.32 44.97 0.78 -2.42 16 22 F -0.19 -5.08 16.40 44.97 0.74 -4.34 16 23 C 0.14 6.13 6.09 86.36 0.53 6.65 16 24 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 25 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.05 2.85 6.04 -2.39 -0.01 2.84 16 27 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.42 5.17 8.60 -92.71 -0.80 4.37 16 32 H 0.18 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.18 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.03 1.35 7.93 -2.39 -0.02 1.33 16 Total: -1.00 -77.22 302.41 4.18 -73.04 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: 0.32 Total: 0.43 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 3.72 Total: 17.27 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -4.10 Total: -105.77 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.04 Total: -21.87 kcal Atomic # 9 Polarization: -13.76 SS G_CDS: 2.25 Total: -11.51 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -77.22 4.18 -73.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479898816.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.554 kcal (2) G-P(sol) polarization free energy of solvation -77.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds