Wall clock time and date at job start Tue Mar 31 2020 01:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00148 * 2 1 4 4 H 1.48508 * 109.46943 * 274.80118 * 3 2 1 5 5 H 1.48498 * 109.46995 * 34.80139 * 3 2 1 6 6 H 1.48493 * 109.47191 * 154.80401 * 3 2 1 7 7 C 1.38820 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99867 * 187.46526 * 7 2 1 9 9 N 1.36939 * 119.99870 * 7.45800 * 7 2 1 10 10 C 1.47065 * 136.05604 * 6.54068 * 9 7 2 11 11 C 1.53500 * 87.98321 * 153.13380 * 10 9 7 12 12 N 1.46493 * 114.20509 * 272.47413 * 11 10 9 13 13 C 1.34778 * 120.00335 * 248.60215 * 12 11 10 14 14 O 1.21278 * 119.99696 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99914 * 180.02562 * 13 12 11 16 16 C 1.53005 * 109.46933 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47033 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.46713 * 179.97438 * 17 16 15 19 19 F 1.39905 * 109.46966 * 60.00456 * 18 17 16 20 20 F 1.39906 * 109.47009 * 179.97438 * 18 17 16 21 21 F 1.39892 * 109.47498 * 300.00128 * 18 17 16 22 22 C 1.47058 * 136.05576 * 186.90334 * 9 7 2 23 23 H 0.96998 * 119.99720 * 359.97438 * 1 2 3 24 24 H 1.09003 * 113.46183 * 267.91111 * 10 9 7 25 25 H 1.08992 * 113.47023 * 38.35400 * 10 9 7 26 26 H 1.09005 * 114.38333 * 139.66162 * 11 10 9 27 27 H 0.97005 * 119.99978 * 68.60030 * 12 11 10 28 28 H 1.08997 * 109.47426 * 299.99715 * 15 13 12 29 29 H 1.09005 * 109.47099 * 60.00114 * 15 13 12 30 30 H 1.08997 * 109.47078 * 300.00229 * 16 15 13 31 31 H 1.09000 * 109.46936 * 59.99545 * 16 15 13 32 32 H 1.09001 * 109.46657 * 299.99623 * 17 16 15 33 33 H 1.08991 * 109.47073 * 60.00294 * 17 16 15 34 34 H 1.09000 * 113.47406 * 321.64878 * 22 9 7 35 35 H 1.09005 * 113.46688 * 92.02731 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3963 2.1050 -1.3952 5 1 1.5022 2.6212 0.7991 6 1 3.5948 1.4130 0.5960 7 6 2.0103 -1.2022 -0.0005 8 1 3.0834 -1.2062 0.1210 9 7 1.3343 -2.3830 -0.1550 10 6 -0.0498 -2.7794 -0.4553 11 6 0.5093 -4.0773 -1.0546 12 7 0.8717 -3.9777 -2.4705 13 6 0.1558 -4.6441 -3.3978 14 8 -0.7881 -5.3265 -3.0600 15 6 0.5291 -4.5421 -4.8543 16 6 -0.4353 -5.3880 -5.6883 17 6 -0.0567 -5.2839 -7.1671 18 6 -1.0207 -6.1303 -8.0009 19 9 -2.3271 -5.6636 -7.8200 20 9 -0.6750 -6.0348 -9.3532 21 9 -0.9418 -7.4659 -7.5922 22 6 1.6714 -3.8129 -0.0873 23 1 -0.4849 0.8400 0.0004 24 1 -0.6583 -2.9391 0.4349 25 1 -0.5359 -2.1366 -1.1891 26 1 -0.0731 -4.9685 -0.8204 27 1 1.6270 -3.4322 -2.7406 28 1 0.4688 -3.5015 -5.1729 29 1 1.5466 -4.9068 -4.9950 30 1 -0.3746 -6.4286 -5.3697 31 1 -1.4529 -5.0237 -5.5476 32 1 -0.1179 -4.2432 -7.4854 33 1 0.9609 -5.6479 -7.3081 34 1 2.6488 -4.0489 -0.5082 35 1 1.5223 -4.2477 0.9011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481584729.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:45 Heat of formation + Delta-G solvation = -149.576680 kcal Electronic energy + Delta-G solvation = -21595.974401 eV Core-core repulsion = 17601.442704 eV Total energy + Delta-G solvation = -3994.531698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.28359 -47.79831 -47.74450 -39.67082 -37.82105 -35.07673 -33.30528 -31.92891 -29.79511 -27.58437 -24.83500 -24.66426 -23.14021 -21.97317 -20.22880 -19.33666 -18.74550 -18.47536 -17.77301 -16.85059 -16.45465 -15.97775 -15.34956 -14.94813 -14.69044 -14.68722 -14.20876 -14.02487 -13.93250 -13.88917 -13.81328 -13.68622 -13.14954 -12.71820 -12.65795 -12.36499 -11.96139 -11.60907 -11.56934 -11.38735 -11.05126 -10.91136 -10.65035 -10.27609 -9.96168 -9.58787 -9.45369 -8.87053 -8.39111 -6.97601 -5.85155 -3.17552 2.55761 2.92403 3.33079 3.38368 3.41242 3.41280 3.65156 3.83943 3.88014 4.39135 4.63594 4.67814 4.84295 5.12521 5.14301 5.16993 5.25510 5.39944 5.48854 5.50254 5.81529 6.00518 6.11308 6.19433 6.36127 6.49179 6.78030 7.13590 7.27025 7.48042 7.88254 7.97996 8.58920 8.95565 9.62527 10.56387 11.32863 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.026748 B = 0.003171 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.539193 B = 8829.167085 C = 9354.008234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.225 4.225 8 H 0.082 0.918 9 N -0.608 5.608 10 C 0.149 3.851 11 C 0.083 3.917 12 N -0.691 5.691 13 C 0.511 3.489 14 O -0.551 6.551 15 C -0.137 4.137 16 C -0.109 4.109 17 C -0.167 4.167 18 C 0.452 3.548 19 F -0.182 7.182 20 F -0.188 7.188 21 F -0.184 7.184 22 C 0.107 3.893 23 H 0.254 0.746 24 H 0.038 0.962 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.405 0.595 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.043 0.957 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.600 -11.184 -15.125 18.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.352 4.352 8 H 0.099 0.901 9 N -0.335 5.335 10 C 0.023 3.977 11 C -0.024 4.024 12 N -0.340 5.340 13 C 0.297 3.703 14 O -0.430 6.430 15 C -0.177 4.177 16 C -0.147 4.147 17 C -0.205 4.205 18 C 0.398 3.602 19 F -0.164 7.164 20 F -0.170 7.170 21 F -0.165 7.165 22 C -0.020 4.020 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.115 0.885 27 H 0.239 0.761 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.061 0.939 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.949 -11.314 -14.851 18.694 hybrid contribution 0.632 1.216 -0.033 1.371 sum 1.580 -10.098 -14.884 18.055 Atomic orbital electron populations 1.69868 1.05079 1.25516 1.55702 1.24852 0.95617 0.97691 1.02070 0.86109 0.78648 0.83462 0.77546 1.21539 1.21691 1.20554 1.18949 0.90485 0.81599 1.44173 0.90066 1.45861 1.06215 0.99163 1.82241 1.22424 0.88679 0.89970 0.96670 1.22612 0.99174 1.00252 0.80337 1.45485 1.33287 1.48750 1.06471 1.20443 0.82701 0.79417 0.87721 1.90683 1.28788 1.41242 1.82280 1.21573 1.01025 1.02669 0.92470 1.21329 1.00952 1.02452 0.89961 1.22933 0.99279 1.01673 0.96645 1.20626 0.81369 0.79481 0.78758 1.93200 1.39802 1.88343 1.95055 1.93184 1.92003 1.96101 1.35708 1.93187 1.96267 1.36909 1.90144 1.22777 0.95875 0.87387 0.95916 0.93554 0.94381 0.91957 0.88517 0.76062 0.88415 0.88690 0.89745 0.89621 0.87078 0.87187 0.93871 0.93788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 11.86 55.49 0.66 -26.16 16 2 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 3 Si 0.91 21.45 29.56 -169.99 -5.02 16.42 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.22 -6.05 10.73 -15.06 -0.16 -6.21 16 8 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 9 N -0.61 -14.87 3.76 -184.80 -0.70 -15.57 16 10 C 0.15 3.47 7.02 -8.51 -0.06 3.41 16 11 C 0.08 1.54 4.61 -67.82 -0.31 1.23 16 12 N -0.69 -11.14 5.39 -53.62 -0.29 -11.43 16 13 C 0.51 7.72 7.83 -10.98 -0.09 7.63 16 14 O -0.55 -10.30 15.57 5.56 0.09 -10.22 16 15 C -0.14 -1.35 5.70 -27.88 -0.16 -1.51 16 16 C -0.11 -1.05 4.26 -26.73 -0.11 -1.17 16 17 C -0.17 -1.16 5.26 -26.73 -0.14 -1.30 16 18 C 0.45 4.14 3.16 37.16 0.12 4.26 16 19 F -0.18 -1.97 16.80 2.25 0.04 -1.93 16 20 F -0.19 -1.78 17.32 2.25 0.04 -1.74 16 21 F -0.18 -1.90 16.80 2.25 0.04 -1.87 16 22 C 0.11 2.08 8.45 -8.52 -0.07 2.01 16 23 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 24 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 1.61 7.63 -51.93 -0.40 1.22 16 26 H 0.10 1.76 7.45 -51.93 -0.39 1.38 16 27 H 0.40 6.08 8.76 -40.82 -0.36 5.72 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.89 7.76 -51.93 -0.40 0.49 16 31 H 0.09 0.97 7.76 -51.93 -0.40 0.57 16 32 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 313.40 15.07 4.72 4.72 Total: -1.00 -32.32 313.40 -5.96 -38.28 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.45 Total: 1.37 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -1.08 Total: 8.12 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.33 Total: -53.15 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.11 Total: -5.54 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.32 -5.96 -38.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481584729.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.297 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds