Wall clock time and date at job start Tue Mar 31 2020 01:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00148 * 2 1 4 4 H 1.48508 * 109.46943 * 274.80118 * 3 2 1 5 5 H 1.48498 * 109.46995 * 34.80139 * 3 2 1 6 6 H 1.48493 * 109.47191 * 154.80401 * 3 2 1 7 7 C 1.38820 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99867 * 187.46526 * 7 2 1 9 9 N 1.36939 * 119.99870 * 7.45800 * 7 2 1 10 10 C 1.47065 * 136.05604 * 6.54068 * 9 7 2 11 11 C 1.53500 * 87.98321 * 153.13380 * 10 9 7 12 12 N 1.46493 * 114.20509 * 272.47413 * 11 10 9 13 13 C 1.34778 * 120.00335 * 248.60215 * 12 11 10 14 14 O 1.21278 * 119.99696 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99914 * 180.02562 * 13 12 11 16 16 C 1.53005 * 109.46933 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47033 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.46713 * 179.97438 * 17 16 15 19 19 F 1.39905 * 109.46966 * 60.00456 * 18 17 16 20 20 F 1.39906 * 109.47009 * 179.97438 * 18 17 16 21 21 F 1.39892 * 109.47498 * 300.00128 * 18 17 16 22 22 C 1.47058 * 136.05576 * 186.90334 * 9 7 2 23 23 H 0.96998 * 119.99720 * 359.97438 * 1 2 3 24 24 H 1.09003 * 113.46183 * 267.91111 * 10 9 7 25 25 H 1.08992 * 113.47023 * 38.35400 * 10 9 7 26 26 H 1.09005 * 114.38333 * 139.66162 * 11 10 9 27 27 H 0.97005 * 119.99978 * 68.60030 * 12 11 10 28 28 H 1.08997 * 109.47426 * 299.99715 * 15 13 12 29 29 H 1.09005 * 109.47099 * 60.00114 * 15 13 12 30 30 H 1.08997 * 109.47078 * 300.00229 * 16 15 13 31 31 H 1.09000 * 109.46936 * 59.99545 * 16 15 13 32 32 H 1.09001 * 109.46657 * 299.99623 * 17 16 15 33 33 H 1.08991 * 109.47073 * 60.00294 * 17 16 15 34 34 H 1.09000 * 113.47406 * 321.64878 * 22 9 7 35 35 H 1.09005 * 113.46688 * 92.02731 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3963 2.1050 -1.3952 5 1 1.5022 2.6212 0.7991 6 1 3.5948 1.4130 0.5960 7 6 2.0103 -1.2022 -0.0005 8 1 3.0834 -1.2062 0.1210 9 7 1.3343 -2.3830 -0.1550 10 6 -0.0498 -2.7794 -0.4553 11 6 0.5093 -4.0773 -1.0546 12 7 0.8717 -3.9777 -2.4705 13 6 0.1558 -4.6441 -3.3978 14 8 -0.7881 -5.3265 -3.0600 15 6 0.5291 -4.5421 -4.8543 16 6 -0.4353 -5.3880 -5.6883 17 6 -0.0567 -5.2839 -7.1671 18 6 -1.0207 -6.1303 -8.0009 19 9 -2.3271 -5.6636 -7.8200 20 9 -0.6750 -6.0348 -9.3532 21 9 -0.9418 -7.4659 -7.5922 22 6 1.6714 -3.8129 -0.0873 23 1 -0.4849 0.8400 0.0004 24 1 -0.6583 -2.9391 0.4349 25 1 -0.5359 -2.1366 -1.1891 26 1 -0.0731 -4.9685 -0.8204 27 1 1.6270 -3.4322 -2.7406 28 1 0.4688 -3.5015 -5.1729 29 1 1.5466 -4.9068 -4.9950 30 1 -0.3746 -6.4286 -5.3697 31 1 -1.4529 -5.0237 -5.5476 32 1 -0.1179 -4.2432 -7.4854 33 1 0.9609 -5.6479 -7.3081 34 1 2.6488 -4.0489 -0.5082 35 1 1.5223 -4.2477 0.9011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481584729.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:44 Heat of formation + Delta-G solvation = -171.444118 kcal Electronic energy + Delta-G solvation = -21596.922645 eV Core-core repulsion = 17601.442704 eV Total energy + Delta-G solvation = -3995.479941 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.02842 -48.53595 -48.52276 -41.04494 -39.36754 -35.87243 -34.91188 -33.73142 -30.70748 -29.38238 -26.40124 -25.90988 -24.70481 -22.82630 -21.39421 -20.94662 -19.48478 -19.22832 -18.75589 -18.60679 -17.60707 -16.95356 -16.87563 -16.63668 -15.71298 -15.56659 -15.44427 -15.18710 -14.98595 -14.88187 -14.68052 -14.67364 -14.54091 -14.36136 -13.56120 -13.40830 -13.28885 -12.95417 -12.79275 -12.75429 -12.41183 -12.33450 -12.09751 -11.78207 -11.77024 -11.26998 -10.98243 -10.77264 -9.85783 -8.96015 -7.92141 -5.25431 1.48022 1.49336 1.58618 1.72639 1.86707 2.30553 2.47883 2.94921 3.11688 3.17374 3.31078 3.45274 3.76280 3.83088 4.02733 4.10193 4.33767 4.52122 4.53931 4.58156 4.63279 4.75493 4.81639 4.93377 5.07527 5.14456 5.20988 5.26377 5.47016 5.75054 5.88698 6.71789 6.88516 7.36832 7.59563 8.59463 9.26486 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.026748 B = 0.003171 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.539193 B = 8829.167085 C = 9354.008234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.067 4.067 3 Si 0.981 3.019 4 H -0.284 1.284 5 H -0.301 1.301 6 H -0.264 1.264 7 C -0.227 4.227 8 H 0.092 0.908 9 N -0.631 5.631 10 C 0.145 3.855 11 C 0.109 3.891 12 N -0.691 5.691 13 C 0.506 3.494 14 O -0.591 6.591 15 C -0.126 4.126 16 C -0.107 4.107 17 C -0.155 4.155 18 C 0.447 3.553 19 F -0.196 7.196 20 F -0.190 7.190 21 F -0.193 7.193 22 C 0.115 3.885 23 H 0.247 0.753 24 H 0.020 0.980 25 H 0.026 0.974 26 H 0.103 0.897 27 H 0.412 0.588 28 H 0.117 0.883 29 H 0.133 0.867 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.132 0.868 33 H 0.139 0.861 34 H 0.069 0.931 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.961 -11.468 -16.402 20.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.260 4.260 3 Si 0.809 3.191 4 H -0.211 1.211 5 H -0.229 1.229 6 H -0.189 1.189 7 C -0.355 4.355 8 H 0.110 0.890 9 N -0.358 5.358 10 C 0.017 3.983 11 C 0.001 3.999 12 N -0.340 5.340 13 C 0.295 3.705 14 O -0.472 6.472 15 C -0.165 4.165 16 C -0.145 4.145 17 C -0.193 4.193 18 C 0.393 3.607 19 F -0.178 7.178 20 F -0.171 7.171 21 F -0.175 7.175 22 C -0.011 4.011 23 H 0.056 0.944 24 H 0.037 0.963 25 H 0.045 0.955 26 H 0.121 0.879 27 H 0.248 0.752 28 H 0.135 0.865 29 H 0.151 0.849 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.150 0.850 33 H 0.157 0.843 34 H 0.087 0.913 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.354 -11.629 -16.149 20.181 hybrid contribution -0.135 1.213 0.370 1.276 sum 3.218 -10.416 -15.779 19.178 Atomic orbital electron populations 1.70067 1.06792 1.25652 1.57906 1.25697 0.96356 1.01156 1.02790 0.85031 0.77779 0.78938 0.77375 1.21088 1.22858 1.18884 1.19396 0.91226 0.82674 1.42232 0.89008 1.46125 1.06706 1.00677 1.82315 1.22394 0.88333 0.91961 0.95592 1.22215 0.98092 0.97634 0.81914 1.45497 1.33761 1.49230 1.05521 1.21427 0.81536 0.77934 0.89587 1.90671 1.30454 1.42838 1.83249 1.21612 1.02799 1.04068 0.88043 1.21243 0.99834 1.01544 0.91918 1.22932 0.99850 1.02565 0.93920 1.21028 0.81272 0.79374 0.79032 1.93175 1.41056 1.88441 1.95131 1.93180 1.91925 1.96080 1.35924 1.93168 1.96271 1.37828 1.90231 1.22874 0.97276 0.84244 0.96710 0.94420 0.96259 0.95512 0.87878 0.75169 0.86485 0.84937 0.90982 0.91990 0.85018 0.84259 0.91326 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.39 11.86 21.65 0.26 -57.14 16 2 C -0.07 -3.69 5.49 84.86 0.47 -3.22 16 3 Si 0.98 44.07 29.56 68.60 2.03 46.09 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.23 -12.06 10.73 84.04 0.90 -11.16 16 8 H 0.09 4.56 7.84 -2.91 -0.02 4.54 16 9 N -0.63 -30.60 3.76 -738.58 -2.78 -33.38 16 10 C 0.14 6.87 7.02 83.18 0.58 7.45 16 11 C 0.11 3.97 4.61 45.47 0.21 4.18 16 12 N -0.69 -21.11 5.39 -441.95 -2.38 -23.49 16 13 C 0.51 14.49 7.83 87.66 0.69 15.18 16 14 O -0.59 -21.89 15.57 -3.02 -0.05 -21.93 16 15 C -0.13 -2.08 5.70 29.85 0.17 -1.91 16 16 C -0.11 -1.86 4.26 30.60 0.13 -1.73 16 17 C -0.15 -1.68 5.26 30.59 0.16 -1.52 16 18 C 0.45 7.49 3.16 71.98 0.23 7.72 16 19 F -0.20 -4.13 16.80 44.97 0.76 -3.38 16 20 F -0.19 -3.25 17.32 44.97 0.78 -2.47 16 21 F -0.19 -3.81 16.80 44.97 0.76 -3.06 16 22 C 0.11 4.23 8.45 83.18 0.70 4.93 16 23 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 24 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.03 1.43 7.63 -2.39 -0.02 1.41 16 26 H 0.10 3.68 7.45 -2.38 -0.02 3.66 16 27 H 0.41 11.39 8.76 -92.70 -0.81 10.58 16 28 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.07 1.43 7.76 -2.39 -0.02 1.42 16 31 H 0.06 1.37 7.76 -2.39 -0.02 1.35 16 32 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -71.81 313.40 3.91 -67.90 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.31 Total: 10.95 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: 4.24 Total: 19.91 kcal Atomic # 7 Polarization: -109.11 SS G_CDS: -4.90 Total: -114.01 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.05 Total: -21.93 kcal Atomic # 9 Polarization: -11.20 SS G_CDS: 2.29 Total: -8.91 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -71.81 3.91 -67.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481584729.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.544 kcal (2) G-P(sol) polarization free energy of solvation -71.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds