Wall clock time and date at job start Tue Mar 31 2020 01:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00010 * 2 1 4 4 H 1.48505 * 109.46983 * 270.00023 * 3 2 1 5 5 H 1.48493 * 109.47052 * 29.99776 * 3 2 1 6 6 H 1.48498 * 109.47385 * 150.00253 * 3 2 1 7 7 C 1.38814 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00519 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99469 * 359.97438 * 7 2 1 10 10 C 1.47585 * 134.49063 * 179.97438 * 9 7 2 11 11 C 1.53945 * 86.11753 * 155.36316 * 10 9 7 12 12 O 1.42893 * 113.73996 * 269.15745 * 11 10 9 13 13 C 1.52996 * 113.74359 * 137.95189 * 11 10 9 14 14 N 1.46498 * 109.47059 * 184.99795 * 13 11 10 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 11 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 C 1.50701 * 109.47355 * 180.02562 * 17 15 14 19 19 C 1.41376 * 126.57624 * 90.00305 * 18 17 15 20 20 C 1.34509 * 106.84112 * 179.97438 * 19 18 17 21 21 O 1.34304 * 108.41984 * 359.97438 * 20 19 18 22 22 C 1.34299 * 109.47371 * 359.76880 * 21 20 19 23 23 C 1.47584 * 134.49397 * 0.02562 * 9 7 2 24 24 H 0.96996 * 119.99959 * 359.97438 * 1 2 3 25 25 H 1.08998 * 113.76522 * 41.06008 * 10 9 7 26 26 H 1.08997 * 113.87139 * 269.67814 * 10 9 7 27 27 H 0.96704 * 114.00131 * 178.06981 * 12 11 10 28 28 H 1.09004 * 109.47066 * 65.00063 * 13 11 10 29 29 H 1.08994 * 109.46974 * 305.00210 * 13 11 10 30 30 H 0.97001 * 120.00384 * 0.02562 * 14 13 11 31 31 H 1.08998 * 109.46954 * 300.00581 * 17 15 14 32 32 H 1.09002 * 109.46946 * 59.99717 * 17 15 14 33 33 H 1.08003 * 126.58399 * 359.97438 * 19 18 17 34 34 H 1.08000 * 125.79257 * 179.97438 * 20 19 18 35 35 H 1.08005 * 125.79118 * 180.24265 * 22 21 20 36 36 H 1.08999 * 113.76727 * 90.34057 * 23 9 7 37 37 H 1.08993 * 113.76551 * 318.93800 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 1.7202 -3.8102 0.0019 11 6 0.3475 -4.0827 0.6434 12 8 0.3649 -4.0570 2.0720 13 6 -0.3634 -5.3136 0.0775 14 7 -1.7021 -5.4168 0.6636 15 6 -2.5181 -6.4281 0.3060 16 8 -2.1423 -7.2555 -0.4972 17 6 -3.8975 -6.5308 0.9041 18 6 -4.5996 -7.7405 0.3431 19 6 -4.5778 -9.0498 0.8760 20 6 -5.3338 -9.8128 0.0662 21 8 -5.8101 -9.0392 -0.9230 22 6 -5.3724 -7.7804 -0.7571 23 6 -0.1033 -2.7574 0.0019 24 1 -0.4850 0.8400 0.0004 25 1 2.5629 -4.0320 0.6566 26 1 1.8319 -4.2371 -0.9947 27 1 -0.5011 -4.1986 2.4785 28 1 0.2098 -6.2082 0.3209 29 1 -0.4470 -5.2191 -1.0051 30 1 -2.0028 -4.7549 1.3057 31 1 -3.8177 -6.6271 1.9869 32 1 -4.4670 -5.6340 0.6602 33 1 -4.0546 -9.3752 1.7630 34 1 -5.5254 -10.8684 0.1904 35 1 -5.6000 -6.9427 -1.3997 36 1 -0.5271 -2.8739 -0.9955 37 1 -0.7168 -2.1385 0.6566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484267392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:52 Heat of formation + Delta-G solvation = -35.846088 kcal Electronic energy + Delta-G solvation = -21328.603288 eV Core-core repulsion = 17880.860060 eV Total energy + Delta-G solvation = -3447.743229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.40143 -41.08628 -39.98973 -36.49320 -35.23315 -34.88714 -34.00828 -31.47810 -30.30619 -28.89587 -27.20954 -26.69464 -23.82566 -22.45685 -22.07880 -21.13836 -20.84363 -19.05705 -18.57234 -18.15830 -17.36275 -17.12534 -16.75387 -16.48623 -16.25941 -15.79685 -15.53386 -15.29140 -14.94386 -14.68474 -14.31029 -13.98281 -13.82514 -13.62387 -13.40044 -13.29441 -12.96425 -12.82579 -12.54684 -12.37778 -12.21470 -11.76954 -11.43043 -11.05816 -10.96485 -10.71121 -10.48683 -10.10715 -9.38825 -8.93646 -7.91542 -5.24082 0.91847 1.45526 1.47296 1.55911 1.61970 1.69002 2.29320 2.39506 2.46546 3.06702 3.28193 3.35687 3.59593 3.82300 3.92245 3.99418 4.07968 4.22331 4.38376 4.60727 4.68328 4.68952 4.76908 4.78547 4.84995 4.96169 5.15447 5.17075 5.32162 5.33976 5.37534 5.49881 5.63478 5.92321 6.24489 6.53218 6.85808 6.91719 7.27587 7.58780 8.52331 9.25070 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.039943 B = 0.003086 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.831349 B = 9069.952358 C = 9366.064947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.065 4.065 3 Si 0.979 3.021 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.236 4.236 8 H 0.081 0.919 9 N -0.636 5.636 10 C 0.127 3.873 11 C 0.100 3.900 12 O -0.540 6.540 13 C 0.119 3.881 14 N -0.718 5.718 15 C 0.514 3.486 16 O -0.580 6.580 17 C -0.064 4.064 18 C -0.182 4.182 19 C -0.221 4.221 20 C -0.048 4.048 21 O -0.193 6.193 22 C -0.043 4.043 23 C 0.144 3.856 24 H 0.249 0.751 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.384 0.616 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.412 0.588 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.157 0.843 34 H 0.233 0.767 35 H 0.219 0.781 36 H 0.026 0.974 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.063 -16.444 3.835 20.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.258 4.258 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.364 4.364 8 H 0.099 0.901 9 N -0.362 5.362 10 C 0.002 3.998 11 C 0.057 3.943 12 O -0.347 6.347 13 C -0.006 4.006 14 N -0.371 5.371 15 C 0.302 3.698 16 O -0.460 6.460 17 C -0.104 4.104 18 C -0.183 4.183 19 C -0.240 4.240 20 C -0.115 4.115 21 O -0.089 6.089 22 C -0.110 4.110 23 C 0.018 3.982 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.233 0.767 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.249 0.751 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.175 0.825 34 H 0.249 0.751 35 H 0.235 0.765 36 H 0.044 0.956 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.273 -16.680 2.955 20.348 hybrid contribution 0.023 1.369 0.203 1.385 sum -11.250 -15.310 3.158 19.260 Atomic orbital electron populations 1.69963 1.06235 1.25617 1.58104 1.25591 0.96690 1.00700 1.02854 0.85069 0.77670 0.79072 0.77444 1.21323 1.21786 1.19574 1.19376 0.90791 0.83316 1.42907 0.90142 1.46060 1.03607 1.00332 1.86245 1.22797 0.94969 0.84210 0.97855 1.23105 0.97160 0.92363 0.81644 1.86572 1.35715 1.95145 1.17250 1.21656 0.83237 0.97447 0.98269 1.45844 1.15199 1.29388 1.46694 1.21194 0.87648 0.79876 0.81085 1.90700 1.77090 1.42150 1.36016 1.20068 0.90176 0.97318 1.02795 1.20126 1.03045 0.96234 0.98933 1.21993 1.04706 0.93368 1.03935 1.24637 1.00094 0.98451 0.88313 1.84054 1.60215 1.19447 1.45147 1.24302 1.00792 0.86014 0.99906 1.22852 0.87406 0.91271 0.96647 0.94201 0.92526 0.91241 0.76659 0.90665 0.91284 0.75090 0.85229 0.85374 0.82512 0.75110 0.76487 0.95648 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.50 11.38 21.65 0.25 -56.25 16 2 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 3 Si 0.98 45.90 29.55 68.60 2.03 47.93 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 7 C -0.24 -13.44 10.70 84.03 0.90 -12.54 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.64 -32.85 3.70 -720.13 -2.66 -35.52 16 10 C 0.13 5.15 8.34 86.48 0.72 5.87 16 11 C 0.10 3.50 1.52 -10.12 -0.02 3.49 16 12 O -0.54 -18.37 13.51 -148.98 -2.01 -20.38 16 13 C 0.12 3.42 5.28 86.38 0.46 3.88 16 14 N -0.72 -16.28 5.34 -463.07 -2.47 -18.75 16 15 C 0.51 12.45 7.82 87.66 0.69 13.14 16 16 O -0.58 -19.52 16.03 -3.04 -0.05 -19.57 16 17 C -0.06 -1.03 6.22 29.10 0.18 -0.85 16 18 C -0.18 -3.68 4.66 -19.95 -0.09 -3.78 16 19 C -0.22 -4.24 10.87 22.19 0.24 -4.00 16 20 C -0.05 -0.83 12.09 66.97 0.81 -0.02 16 21 O -0.19 -4.06 10.65 -2.45 -0.03 -4.09 16 22 C -0.04 -0.85 12.01 66.97 0.80 -0.05 16 23 C 0.14 6.52 6.92 86.49 0.60 7.12 16 24 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 25 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.07 2.55 8.10 -2.39 -0.02 2.53 16 27 H 0.38 9.08 7.61 -74.05 -0.56 8.52 16 28 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 29 H 0.07 2.15 8.04 -2.39 -0.02 2.13 16 30 H 0.41 7.21 7.31 -92.71 -0.68 6.53 16 31 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.23 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.22 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.03 1.19 8.03 -2.39 -0.02 1.17 16 37 H 0.05 2.62 7.15 -2.39 -0.02 2.60 16 Total: -1.00 -78.92 322.53 0.67 -78.25 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -0.14 Total: 19.40 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 5.76 Total: 8.98 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -4.89 Total: -110.51 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -2.09 Total: -44.04 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -78.92 0.67 -78.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484267392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.406 kcal (2) G-P(sol) polarization free energy of solvation -78.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds