Wall clock time and date at job start Tue Mar 31 2020 01:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47551 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.89102 * 51.11671 * 11 10 9 13 13 C 1.55157 * 111.00367 * 287.19545 * 11 10 9 14 14 C 1.54326 * 102.94348 * 206.42616 * 13 11 10 15 15 N 1.47022 * 107.27307 * 22.18831 * 14 13 11 16 16 C 1.34777 * 125.64725 * 181.09668 * 15 14 13 17 17 O 1.21280 * 119.99683 * 179.97438 * 16 15 14 18 18 C 1.50694 * 120.00246 * 359.96409 * 16 15 14 19 19 C 1.53000 * 109.47388 * 179.97438 * 18 16 15 20 20 F 1.39903 * 109.46772 * 59.99329 * 19 18 16 21 21 F 1.39893 * 109.47120 * 179.97438 * 19 18 16 22 22 F 1.39897 * 109.47055 * 299.99916 * 19 18 16 23 23 C 1.47420 * 108.70115 * 1.06379 * 15 14 13 24 24 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 25 25 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.46875 * 299.99762 * 10 9 7 27 27 H 1.09004 * 109.47522 * 59.99613 * 10 9 7 28 28 H 1.08999 * 110.71967 * 324.78352 * 13 11 10 29 29 H 1.08993 * 110.72561 * 88.05612 * 13 11 10 30 30 H 1.09007 * 109.87627 * 262.77336 * 14 13 11 31 31 H 1.09000 * 110.01553 * 141.68530 * 14 13 11 32 32 H 1.09006 * 109.47220 * 299.99724 * 18 16 15 33 33 H 1.09001 * 109.47368 * 59.99272 * 18 16 15 34 34 H 1.09002 * 110.36973 * 217.03363 * 23 15 14 35 35 H 1.09000 * 110.36975 * 94.71121 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.8817 -1.4916 0.7938 13 6 6.0849 -1.6685 -1.3827 14 6 7.5684 -2.0913 -1.4277 15 7 7.7343 -3.2037 -0.4807 16 6 8.8912 -3.8408 -0.2122 17 8 8.9109 -4.7490 0.5914 18 6 10.1601 -3.4250 -0.9107 19 6 11.3182 -4.3012 -0.4288 20 9 11.0422 -5.6411 -0.7214 21 9 12.4960 -3.9155 -1.0776 22 9 11.4749 -4.1483 0.9530 23 6 6.4257 -3.5061 0.1271 24 1 -0.4850 0.8401 0.0004 25 1 3.8646 -0.3620 0.0007 26 1 3.8486 -3.0425 0.8909 27 1 3.8493 -3.0422 -0.8891 28 1 5.5234 -2.1461 -2.1856 29 1 5.9911 -0.5840 -1.4373 30 1 8.2014 -1.2548 -1.1314 31 1 7.8329 -2.4180 -2.4333 32 1 10.0379 -3.5437 -1.9873 33 1 10.3752 -2.3811 -0.6824 34 1 6.5479 -3.7771 1.1758 35 1 5.9308 -4.3098 -0.4181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491788938.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:08 Heat of formation + Delta-G solvation = -176.208673 kcal Electronic energy + Delta-G solvation = -21970.742474 eV Core-core repulsion = 17975.055927 eV Total energy + Delta-G solvation = -3995.686547 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.33754 -47.88281 -47.74479 -40.35243 -37.97529 -34.99508 -32.84205 -31.84189 -30.58537 -29.37938 -26.07106 -24.26228 -23.07636 -22.08507 -20.38871 -19.89511 -18.86891 -18.81436 -17.71060 -17.61926 -17.07608 -16.37643 -15.60034 -15.00966 -14.68611 -14.61145 -14.43422 -14.19603 -13.96019 -13.92912 -13.90785 -13.69819 -13.42920 -13.14705 -12.98287 -12.62256 -12.50698 -12.30717 -11.94491 -11.68857 -11.03471 -10.79961 -10.72526 -10.63058 -10.32059 -10.19587 -9.65099 -8.97141 -8.93436 -7.30793 -5.82428 -3.18964 2.16444 2.17021 2.69607 3.29953 3.33733 3.37903 3.40120 3.65554 3.70510 4.22136 4.45466 4.52773 4.57958 4.59180 4.65796 4.81891 5.04087 5.20068 5.36417 5.47907 5.65779 5.68435 5.75199 5.78240 5.90629 6.04609 6.16832 6.54382 6.62677 7.12895 7.69292 7.92988 8.36210 9.14616 9.86529 10.05659 11.35904 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.044515 B = 0.003174 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.850790 B = 8820.476993 C = 9093.829119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.278 1.278 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.754 5.754 10 C 0.169 3.831 11 C -0.111 4.111 12 H 0.086 0.914 13 C -0.124 4.124 14 C 0.094 3.906 15 N -0.611 5.611 16 C 0.531 3.469 17 O -0.523 6.523 18 C -0.192 4.192 19 C 0.473 3.527 20 F -0.173 7.173 21 F -0.183 7.183 22 F -0.173 7.173 23 C 0.114 3.886 24 H 0.260 0.740 25 H 0.361 0.639 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.082 0.918 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.556 -4.894 -4.794 24.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.204 1.204 6 H -0.217 1.217 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.400 5.400 10 C 0.041 3.959 11 C -0.130 4.130 12 H 0.104 0.896 13 C -0.162 4.162 14 C -0.029 4.029 15 N -0.345 5.345 16 C 0.318 3.682 17 O -0.399 6.399 18 C -0.233 4.233 19 C 0.418 3.582 20 F -0.154 7.154 21 F -0.165 7.165 22 F -0.154 7.154 23 C -0.008 4.008 24 H 0.070 0.930 25 H 0.193 0.807 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.101 0.899 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 23.421 -5.535 -4.338 24.454 hybrid contribution 0.711 1.289 -0.073 1.474 sum 24.132 -4.246 -4.411 24.897 Atomic orbital electron populations 1.69703 1.05130 1.25893 1.57368 1.24685 0.95240 0.97243 1.01954 0.86534 0.79091 0.84969 0.77780 1.21070 1.20404 1.21700 1.19050 0.80528 0.94805 1.43235 0.89158 1.42647 1.04048 1.02030 1.91275 1.20526 0.86619 0.89598 0.99165 1.22645 0.96885 0.95989 0.97492 0.89589 1.22700 0.92645 1.02456 0.98387 1.22250 0.99155 0.88810 0.92679 1.48405 1.08076 1.35005 1.43023 1.19322 0.83427 0.82634 0.82846 1.90838 1.85308 1.29200 1.34567 1.22953 0.92000 1.02973 1.05386 1.19706 0.82853 0.79789 0.75854 1.93229 1.93503 1.35696 1.93002 1.93199 1.50852 1.90983 1.81450 1.93230 1.95954 1.95424 1.30804 1.22315 0.81227 0.97825 0.99416 0.92986 0.80669 0.95005 0.95045 0.89707 0.89641 0.91166 0.91030 0.84431 0.84450 0.89915 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.79 13.97 55.49 0.78 -28.02 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 3 Si 0.89 21.26 27.74 -169.99 -4.71 16.54 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.28 -6.10 6.52 56.52 0.37 -5.73 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.25 -6.75 10.47 -15.06 -0.16 -6.91 16 8 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 9 N -0.75 -16.77 5.35 -59.91 -0.32 -17.09 16 10 C 0.17 2.93 5.71 -4.05 -0.02 2.91 16 11 C -0.11 -1.45 3.05 -88.47 -0.27 -1.72 16 12 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 13 C -0.12 -1.35 6.37 -24.90 -0.16 -1.51 16 14 C 0.09 0.76 6.49 -3.06 -0.02 0.74 16 15 N -0.61 -6.51 3.33 -170.52 -0.57 -7.07 16 16 C 0.53 6.04 7.62 -10.99 -0.08 5.95 16 17 O -0.52 -8.10 15.09 5.56 0.08 -8.02 16 18 C -0.19 -1.38 4.94 -27.89 -0.14 -1.52 16 19 C 0.47 4.59 2.89 37.16 0.11 4.69 16 20 F -0.17 -2.03 16.40 2.25 0.04 -2.00 16 21 F -0.18 -1.61 17.32 2.25 0.04 -1.57 16 22 F -0.17 -2.05 16.40 2.25 0.04 -2.01 16 23 C 0.11 1.38 6.38 -2.53 -0.02 1.37 16 24 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.36 7.73 5.53 -40.82 -0.23 7.50 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.03 0.55 7.97 -51.93 -0.41 0.14 16 28 H 0.08 0.96 7.91 -51.93 -0.41 0.55 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.14 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 35 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 LS Contribution 306.59 15.07 4.62 4.62 Total: -1.00 -33.43 306.59 -5.30 -38.73 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.44 Total: 1.84 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -0.85 Total: 4.05 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.11 Total: -52.18 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.08 Total: -8.02 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.11 Total: -5.58 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.71 Total: 16.54 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.43 -5.30 -38.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491788938.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.478 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds