Wall clock time and date at job start Tue Mar 31 2020 01:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00214 * 2 1 4 4 H 1.48498 * 109.47410 * 239.99711 * 3 2 1 5 5 H 1.48499 * 109.47246 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47132 * 119.99857 * 3 2 1 7 7 C 1.38811 * 119.99500 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99652 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00578 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00286 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46994 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47600 * 305.00030 * 11 10 9 13 13 O 1.42903 * 109.47107 * 65.00408 * 11 10 9 14 14 C 1.53004 * 109.46992 * 185.00377 * 11 10 9 15 15 N 1.46504 * 109.46932 * 180.02562 * 14 11 10 16 16 C 1.34777 * 119.99858 * 180.02562 * 15 14 11 17 17 O 1.21783 * 120.00071 * 359.97438 * 16 15 14 18 18 C 1.41552 * 119.99977 * 179.97438 * 16 15 14 19 19 C 1.35629 * 119.99787 * 179.97438 * 18 16 15 20 20 C 1.41605 * 119.99687 * 180.27593 * 19 18 16 21 21 C 1.37947 * 126.10187 * 179.72394 * 20 19 18 22 22 C 1.40319 * 106.52797 * 179.97438 * 21 20 19 23 23 C 1.35149 * 107.20536 * 359.97438 * 22 21 20 24 24 O 1.34026 * 109.03401 * 359.75781 * 23 22 21 25 25 H 0.97005 * 119.99996 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99559 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47127 * 60.00334 * 10 9 7 28 28 H 1.08998 * 109.47560 * 299.99830 * 10 9 7 29 29 H 0.96696 * 113.99852 * 59.99605 * 13 11 10 30 30 H 1.08998 * 109.47524 * 60.00004 * 14 11 10 31 31 H 1.09005 * 109.46939 * 299.99630 * 14 11 10 32 32 H 0.97000 * 119.99819 * 359.97438 * 15 14 11 33 33 H 1.08001 * 119.99776 * 359.97438 * 18 16 15 34 34 H 1.08002 * 119.99902 * 359.97438 * 19 18 16 35 35 H 1.07996 * 126.73768 * 359.97438 * 21 20 19 36 36 H 1.08001 * 126.39706 * 179.97438 * 22 21 20 37 37 H 1.08000 * 125.48744 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 1 0.3798 -4.7126 0.8432 13 8 0.3209 -4.8120 -1.2196 14 6 1.8244 -6.1412 0.1270 15 7 0.8724 -7.2547 0.1270 16 6 1.3182 -8.5224 0.2293 17 8 2.5125 -8.7424 0.3213 18 6 0.3983 -9.5983 0.2299 19 6 0.8471 -10.8741 0.3323 20 6 -0.0728 -11.9507 0.3270 21 6 0.2433 -13.2903 0.4182 22 6 -0.9716 -13.9911 0.3741 23 6 -1.9580 -13.0742 0.2610 24 8 -1.4154 -11.8489 0.2386 25 1 -0.4850 0.8401 0.0004 26 1 0.3554 -2.3880 0.0005 27 1 2.6845 -3.7146 0.8906 28 1 2.6846 -3.7147 -0.8894 29 1 0.8666 -4.9036 -2.0126 30 1 2.3910 -6.1471 1.0582 31 1 2.5083 -6.2483 -0.7151 32 1 -0.0789 -7.0794 0.0541 33 1 -0.6608 -9.4032 0.1487 34 1 1.9062 -11.0691 0.4131 35 1 1.2318 -13.7163 0.5063 36 1 -1.0953 -15.0629 0.4216 37 1 -3.0140 -13.2933 0.2027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496928159.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:28 Heat of formation + Delta-G solvation = -43.538686 kcal Electronic energy + Delta-G solvation = -20196.628062 eV Core-core repulsion = 16748.551257 eV Total energy + Delta-G solvation = -3448.076805 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.93543 -39.95451 -37.68261 -34.60710 -34.26910 -33.97940 -33.43788 -31.33691 -29.88513 -28.67331 -25.78077 -24.03510 -22.49245 -22.22233 -21.42818 -20.87870 -19.69006 -17.94327 -17.39201 -17.11469 -16.47757 -16.43854 -15.95913 -15.40516 -15.01690 -14.70539 -14.45334 -14.02310 -13.63358 -13.41182 -13.20541 -13.02420 -12.80668 -12.70018 -12.44066 -12.31216 -11.86333 -10.98294 -10.96444 -10.80220 -10.62176 -10.31563 -10.21935 -10.16059 -9.80884 -9.50884 -9.11971 -8.90021 -8.32839 -6.94229 -5.76127 -3.05885 0.11707 1.75153 2.33588 2.55030 3.20941 3.30451 3.44446 3.48604 3.49890 4.34522 4.50806 4.54382 4.56665 4.72552 4.81396 4.86779 5.05233 5.24432 5.25652 5.35445 5.55739 5.61448 5.63138 5.67869 5.78619 5.91800 5.96823 6.05810 6.19598 6.40382 6.51446 6.64979 6.67551 7.47091 7.67937 7.93258 8.15982 8.41999 9.53473 10.10031 10.45725 11.46172 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.054928 B = 0.002249 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.634714 B =12448.297861 C =12836.840320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.088 3.912 12 H 0.105 0.895 13 O -0.553 6.553 14 C 0.089 3.911 15 N -0.715 5.715 16 C 0.545 3.455 17 O -0.552 6.552 18 C -0.200 4.200 19 C 0.004 3.996 20 C -0.008 4.008 21 C -0.166 4.166 22 C -0.219 4.219 23 C -0.020 4.020 24 O -0.165 6.165 25 H 0.256 0.744 26 H 0.388 0.612 27 H 0.029 0.971 28 H 0.023 0.977 29 H 0.373 0.627 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.407 0.593 33 H 0.131 0.869 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.015 -28.072 0.181 28.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.371 5.371 10 C -0.002 4.002 11 C 0.029 3.971 12 H 0.123 0.877 13 O -0.358 6.358 14 C -0.036 4.036 15 N -0.365 5.365 16 C 0.335 3.665 17 O -0.433 6.433 18 C -0.220 4.220 19 C -0.016 4.016 20 C -0.057 4.057 21 C -0.185 4.185 22 C -0.238 4.238 23 C -0.089 4.089 24 O -0.060 6.060 25 H 0.066 0.934 26 H 0.223 0.777 27 H 0.047 0.953 28 H 0.041 0.959 29 H 0.220 0.780 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.242 0.758 33 H 0.149 0.851 34 H 0.178 0.822 35 H 0.174 0.826 36 H 0.171 0.829 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.701 -27.695 0.635 27.833 hybrid contribution 0.162 0.741 -0.354 0.837 sum -2.539 -26.954 0.281 27.075 Atomic orbital electron populations 1.69668 1.05112 1.25806 1.57273 1.24769 0.95550 0.97755 1.02833 0.86240 0.78491 0.83413 0.77851 1.21245 1.21651 1.21240 1.19179 0.90982 0.84115 1.43280 0.91242 1.42231 1.06063 0.99402 1.89375 1.21202 0.93513 0.86572 0.98877 1.22409 0.94589 0.91871 0.88269 0.87713 1.86576 1.37542 1.96238 1.15425 1.22109 0.92265 0.85939 1.03251 1.45863 1.11274 1.05659 1.73745 1.16990 0.88638 0.83449 0.77421 1.90841 1.16837 1.85144 1.50512 1.22135 1.00740 0.93278 1.05892 1.20665 0.98100 0.89594 0.93200 1.19917 0.80921 0.95126 1.09737 1.22386 1.00096 0.91788 1.04215 1.21804 0.92301 1.01046 1.08685 1.24351 0.99753 0.80896 1.03946 1.84121 1.19988 1.31731 1.70188 0.93418 0.77728 0.95347 0.95891 0.77980 0.90319 0.90972 0.75809 0.85096 0.82191 0.82576 0.82908 0.77668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -18.48 5.55 -59.91 -0.33 -18.81 16 10 C 0.13 2.47 5.90 -4.04 -0.02 2.45 16 11 C 0.09 1.36 3.09 -26.73 -0.08 1.28 16 12 H 0.11 1.68 8.14 -51.93 -0.42 1.25 16 13 O -0.55 -8.73 13.03 -35.23 -0.46 -9.19 16 14 C 0.09 1.18 5.34 -4.04 -0.02 1.16 16 15 N -0.71 -8.61 5.44 -63.24 -0.34 -8.95 16 16 C 0.54 7.06 7.56 -15.00 -0.11 6.95 16 17 O -0.55 -8.96 16.11 5.11 0.08 -8.88 16 18 C -0.20 -2.06 9.41 -39.25 -0.37 -2.43 16 19 C 0.00 0.04 9.39 -39.23 -0.37 -0.33 16 20 C -0.01 -0.07 6.84 -38.41 -0.26 -0.33 16 21 C -0.17 -1.25 10.90 -38.91 -0.42 -1.68 16 22 C -0.22 -1.39 10.87 -39.90 -0.43 -1.83 16 23 C -0.02 -0.13 12.06 29.63 0.36 0.23 16 24 O -0.16 -1.48 10.18 4.67 0.05 -1.44 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.39 10.57 7.67 -40.82 -0.31 10.25 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.37 4.90 9.04 45.56 0.41 5.31 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.41 4.28 8.30 -40.82 -0.34 3.94 16 33 H 0.13 1.15 7.72 -52.49 -0.41 0.75 16 34 H 0.16 1.46 7.46 -52.49 -0.39 1.07 16 35 H 0.16 0.87 8.06 -52.49 -0.42 0.44 16 36 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.21 0.50 8.06 -52.49 -0.42 0.07 16 LS Contribution 332.29 15.07 5.01 5.01 Total: -1.00 -34.90 332.29 -6.25 -41.15 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -3.96 Total: 13.39 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -1.99 Total: -2.05 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.05 Total: -55.53 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.33 Total: -19.50 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.90 -6.25 -41.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496928159.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.391 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds