Wall clock time and date at job start Tue Mar 31 2020 01:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00214 * 2 1 4 4 H 1.48498 * 109.47410 * 239.99711 * 3 2 1 5 5 H 1.48499 * 109.47246 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47132 * 119.99857 * 3 2 1 7 7 C 1.38811 * 119.99500 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99652 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00578 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00286 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46994 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47600 * 305.00030 * 11 10 9 13 13 O 1.42903 * 109.47107 * 65.00408 * 11 10 9 14 14 C 1.53004 * 109.46992 * 185.00377 * 11 10 9 15 15 N 1.46504 * 109.46932 * 180.02562 * 14 11 10 16 16 C 1.34777 * 119.99858 * 180.02562 * 15 14 11 17 17 O 1.21783 * 120.00071 * 359.97438 * 16 15 14 18 18 C 1.41552 * 119.99977 * 179.97438 * 16 15 14 19 19 C 1.35629 * 119.99787 * 179.97438 * 18 16 15 20 20 C 1.41605 * 119.99687 * 180.27593 * 19 18 16 21 21 C 1.37947 * 126.10187 * 179.72394 * 20 19 18 22 22 C 1.40319 * 106.52797 * 179.97438 * 21 20 19 23 23 C 1.35149 * 107.20536 * 359.97438 * 22 21 20 24 24 O 1.34026 * 109.03401 * 359.75781 * 23 22 21 25 25 H 0.97005 * 119.99996 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99559 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47127 * 60.00334 * 10 9 7 28 28 H 1.08998 * 109.47560 * 299.99830 * 10 9 7 29 29 H 0.96696 * 113.99852 * 59.99605 * 13 11 10 30 30 H 1.08998 * 109.47524 * 60.00004 * 14 11 10 31 31 H 1.09005 * 109.46939 * 299.99630 * 14 11 10 32 32 H 0.97000 * 119.99819 * 359.97438 * 15 14 11 33 33 H 1.08001 * 119.99776 * 359.97438 * 18 16 15 34 34 H 1.08002 * 119.99902 * 359.97438 * 19 18 16 35 35 H 1.07996 * 126.73768 * 359.97438 * 21 20 19 36 36 H 1.08001 * 126.39706 * 179.97438 * 22 21 20 37 37 H 1.08000 * 125.48744 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 1 0.3798 -4.7126 0.8432 13 8 0.3209 -4.8120 -1.2196 14 6 1.8244 -6.1412 0.1270 15 7 0.8724 -7.2547 0.1270 16 6 1.3182 -8.5224 0.2293 17 8 2.5125 -8.7424 0.3213 18 6 0.3983 -9.5983 0.2299 19 6 0.8471 -10.8741 0.3323 20 6 -0.0728 -11.9507 0.3270 21 6 0.2433 -13.2903 0.4182 22 6 -0.9716 -13.9911 0.3741 23 6 -1.9580 -13.0742 0.2610 24 8 -1.4154 -11.8489 0.2386 25 1 -0.4850 0.8401 0.0004 26 1 0.3554 -2.3880 0.0005 27 1 2.6845 -3.7146 0.8906 28 1 2.6846 -3.7147 -0.8894 29 1 0.8666 -4.9036 -2.0126 30 1 2.3910 -6.1471 1.0582 31 1 2.5083 -6.2483 -0.7151 32 1 -0.0789 -7.0794 0.0541 33 1 -0.6608 -9.4032 0.1487 34 1 1.9062 -11.0691 0.4131 35 1 1.2318 -13.7163 0.5063 36 1 -1.0953 -15.0629 0.4216 37 1 -3.0140 -13.2933 0.2027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496928159.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:28 Heat of formation + Delta-G solvation = -71.443177 kcal Electronic energy + Delta-G solvation = -20197.838091 eV Core-core repulsion = 16748.551257 eV Total energy + Delta-G solvation = -3449.286834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.49775 -40.98455 -38.99565 -36.10829 -35.38138 -35.12488 -33.99282 -33.21126 -31.03670 -29.71876 -27.24016 -25.28074 -23.93540 -22.82939 -22.77132 -21.68821 -20.53012 -19.23916 -18.63009 -18.24686 -17.52316 -17.20646 -17.05401 -16.55208 -16.39795 -15.84902 -15.76501 -15.38736 -15.02957 -14.71736 -14.21246 -13.92007 -13.85745 -13.68524 -13.52858 -13.26924 -13.09448 -12.96203 -12.71823 -12.20658 -11.98783 -11.81297 -11.70767 -11.28160 -10.98476 -10.88364 -10.85081 -10.16303 -9.02048 -8.95606 -7.95187 -5.24964 -0.59726 1.15822 1.47453 1.50803 1.57000 1.71060 2.02761 2.20717 2.41546 2.56639 3.35781 3.48265 3.58982 3.72939 3.98150 4.01702 4.06997 4.15133 4.20927 4.26450 4.41385 4.61949 4.67761 4.72082 4.88808 4.93328 5.01766 5.09944 5.20831 5.21172 5.37394 5.47618 5.54248 6.08789 6.25750 6.51660 6.78952 7.18384 7.32723 8.07892 8.31145 9.27835 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.054928 B = 0.002249 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.634714 B =12448.297861 C =12836.840320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.077 4.077 3 Si 0.977 3.023 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.077 0.923 9 N -0.740 5.740 10 C 0.122 3.878 11 C 0.108 3.892 12 H 0.100 0.900 13 O -0.563 6.563 14 C 0.102 3.898 15 N -0.709 5.709 16 C 0.547 3.453 17 O -0.592 6.592 18 C -0.224 4.224 19 C 0.025 3.975 20 C -0.046 4.046 21 C -0.157 4.157 22 C -0.232 4.232 23 C -0.011 4.011 24 O -0.182 6.182 25 H 0.252 0.748 26 H 0.376 0.624 27 H 0.034 0.966 28 H 0.032 0.968 29 H 0.385 0.615 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.415 0.585 33 H 0.144 0.856 34 H 0.160 0.840 35 H 0.173 0.827 36 H 0.178 0.822 37 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.051 -29.865 0.092 30.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.382 4.382 8 H 0.095 0.905 9 N -0.383 5.383 10 C -0.005 4.005 11 C 0.048 3.952 12 H 0.118 0.882 13 O -0.370 6.370 14 C -0.023 4.023 15 N -0.359 5.359 16 C 0.340 3.660 17 O -0.476 6.476 18 C -0.244 4.244 19 C 0.005 3.995 20 C -0.095 4.095 21 C -0.176 4.176 22 C -0.250 4.250 23 C -0.080 4.080 24 O -0.078 6.078 25 H 0.060 0.940 26 H 0.208 0.792 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.234 0.766 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.252 0.748 33 H 0.162 0.838 34 H 0.177 0.823 35 H 0.190 0.810 36 H 0.196 0.804 37 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -2.714 -29.516 0.536 29.646 hybrid contribution 0.138 1.047 -0.333 1.107 sum -2.576 -28.469 0.204 28.586 Atomic orbital electron populations 1.69832 1.06665 1.26206 1.59146 1.25629 0.96449 1.01293 1.03548 0.85167 0.77149 0.78921 0.78225 1.20321 1.22123 1.20320 1.19621 0.91546 0.85347 1.41696 0.90535 1.42419 1.05728 1.00780 1.89402 1.21410 0.94225 0.85694 0.99168 1.22095 0.93510 0.91390 0.88189 0.88233 1.86555 1.38167 1.96214 1.16021 1.21851 0.92058 0.85183 1.03244 1.45759 1.11497 1.05195 1.73481 1.17309 0.88422 0.83918 0.76400 1.90814 1.18446 1.85616 1.52761 1.21978 1.00781 0.92685 1.08965 1.20738 0.98348 0.89691 0.90698 1.19942 0.81210 0.95520 1.12795 1.22801 1.01530 0.91407 1.01836 1.22198 0.91681 1.02421 1.08721 1.25227 1.01458 0.79977 1.01302 1.84114 1.19977 1.33174 1.70572 0.93964 0.79154 0.94811 0.95050 0.76597 0.90558 0.90761 0.74831 0.83849 0.82266 0.80963 0.80444 0.74113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.08 13.06 21.65 0.28 -59.80 16 2 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 3 Si 0.98 46.44 29.55 68.60 2.03 48.47 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.25 -14.11 9.99 84.03 0.84 -13.27 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 9 N -0.74 -37.78 5.55 -343.45 -1.91 -39.69 16 10 C 0.12 4.70 5.90 86.38 0.51 5.20 16 11 C 0.11 3.27 3.09 30.60 0.09 3.37 16 12 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 13 O -0.56 -17.38 13.03 -148.98 -1.94 -19.32 16 14 C 0.10 2.64 5.34 86.38 0.46 3.11 16 15 N -0.71 -16.75 5.44 -472.16 -2.57 -19.31 16 16 C 0.55 14.16 7.56 85.06 0.64 14.81 16 17 O -0.59 -19.39 16.11 -4.61 -0.07 -19.47 16 18 C -0.22 -4.59 9.41 22.48 0.21 -4.38 16 19 C 0.03 0.48 9.39 22.50 0.21 0.69 16 20 C -0.05 -0.79 6.84 23.03 0.16 -0.64 16 21 C -0.16 -2.07 10.90 22.71 0.25 -1.83 16 22 C -0.23 -2.30 10.87 22.06 0.24 -2.06 16 23 C -0.01 -0.11 12.06 67.11 0.81 0.70 16 24 O -0.18 -3.01 10.18 -6.19 -0.06 -3.08 16 25 H 0.25 15.13 8.31 -92.70 -0.77 14.36 16 26 H 0.38 20.77 7.67 -92.71 -0.71 20.06 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 28 H 0.03 1.17 8.14 -2.39 -0.02 1.16 16 29 H 0.39 9.74 9.04 -74.06 -0.67 9.07 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.41 8.47 8.30 -92.71 -0.77 7.70 16 33 H 0.14 2.48 7.72 -2.91 -0.02 2.46 16 34 H 0.16 2.93 7.46 -2.91 -0.02 2.90 16 35 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 36 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 37 H 0.24 0.27 8.06 -2.91 -0.02 0.25 16 Total: -1.00 -74.73 332.29 -0.39 -75.11 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: -1.03 Total: 35.37 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 4.89 Total: 1.71 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -4.19 Total: -118.80 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -2.08 Total: -41.86 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -74.73 -0.39 -75.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496928159.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.667 kcal (2) G-P(sol) polarization free energy of solvation -74.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds