Wall clock time and date at job start Tue Mar 31 2020 01:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00131 * 2 1 4 4 H 1.48504 * 109.46981 * 239.99730 * 3 2 1 5 5 H 1.48498 * 109.46945 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47286 * 119.99839 * 3 2 1 7 7 C 1.38815 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00539 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99445 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99587 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46796 * 179.97438 * 10 9 7 12 12 H 1.08990 * 109.47029 * 305.00000 * 11 10 9 13 13 O 1.42903 * 109.47104 * 64.99903 * 11 10 9 14 14 C 1.53002 * 109.46893 * 184.99739 * 11 10 9 15 15 N 1.46505 * 109.47017 * 180.02562 * 14 11 10 16 16 C 1.34774 * 119.99754 * 180.02562 * 15 14 11 17 17 O 1.21771 * 120.00346 * 0.02562 * 16 15 14 18 18 C 1.41555 * 119.99391 * 179.97438 * 16 15 14 19 19 C 1.35628 * 119.99777 * 173.24242 * 18 16 15 20 20 C 1.41608 * 119.99764 * 351.25558 * 19 18 16 21 21 C 1.37953 * 126.09960 * 139.49462 * 20 19 18 22 22 C 1.40318 * 106.52671 * 179.72954 * 21 20 19 23 23 C 1.35151 * 107.20744 * 0.40886 * 22 21 20 24 24 O 1.34024 * 109.03196 * 359.58507 * 23 22 21 25 25 H 0.96999 * 119.99954 * 0.02562 * 1 2 3 26 26 H 0.97004 * 119.99938 * 0.02562 * 9 7 2 27 27 H 1.08991 * 109.47489 * 60.00150 * 10 9 7 28 28 H 1.09003 * 109.47117 * 299.99410 * 10 9 7 29 29 H 0.96705 * 114.00049 * 59.99551 * 13 11 10 30 30 H 1.09000 * 109.46818 * 60.00302 * 14 11 10 31 31 H 1.09003 * 109.47370 * 300.00232 * 14 11 10 32 32 H 0.97001 * 119.99571 * 359.97438 * 15 14 11 33 33 H 1.07993 * 120.00509 * 353.24404 * 18 16 15 34 34 H 1.07994 * 120.00092 * 171.26353 * 19 18 16 35 35 H 1.08000 * 126.73876 * 0.02562 * 21 20 19 36 36 H 1.08000 * 126.39810 * 180.28606 * 22 21 20 37 37 H 1.07998 * 125.48997 * 179.84645 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0021 12 1 0.3793 -4.7122 0.8435 13 8 0.3219 -4.8125 -1.2193 14 6 1.8245 -6.1411 0.1289 15 7 0.8725 -7.2547 0.1287 16 6 1.3184 -8.5223 0.2318 17 8 2.5124 -8.7421 0.3256 18 6 0.3984 -9.5982 0.2321 19 6 0.8501 -10.8766 0.1975 20 6 2.2243 -11.1362 -0.0252 21 6 2.9841 -12.0949 0.6126 22 6 4.2777 -12.0000 0.0774 23 6 4.2600 -11.0051 -0.8372 24 8 3.0242 -10.4903 -0.8992 25 1 -0.4850 0.8400 -0.0004 26 1 0.3555 -2.3880 -0.0002 27 1 2.6840 -3.7142 0.8921 28 1 2.6853 -3.7149 -0.8879 29 1 0.8682 -4.9044 -2.0119 30 1 2.3904 -6.1465 1.0605 31 1 2.5090 -6.2485 -0.7126 32 1 -0.0787 -7.0795 0.0551 33 1 -0.6630 -9.4012 0.2599 34 1 0.1618 -11.6965 0.3395 35 1 2.6480 -12.7863 1.3711 36 1 5.1291 -12.6071 0.3475 37 1 5.1046 -10.6803 -1.4267 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496928160.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:31 Heat of formation + Delta-G solvation = -32.857445 kcal Electronic energy + Delta-G solvation = -20946.684949 eV Core-core repulsion = 17499.071318 eV Total energy + Delta-G solvation = -3447.613631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.48799 -39.87212 -37.67608 -34.56679 -34.13515 -33.93120 -32.91692 -31.33319 -29.67966 -28.48024 -25.73609 -23.87179 -22.40170 -21.74633 -21.42077 -21.03943 -19.57144 -18.10682 -17.16476 -16.72305 -16.46007 -15.97967 -15.84239 -15.31931 -14.65968 -14.48157 -14.37330 -14.11601 -13.60242 -13.27906 -12.96926 -12.92361 -12.68979 -12.65245 -12.45206 -12.27220 -11.84944 -10.96945 -10.80653 -10.61489 -10.30489 -10.21587 -10.09060 -9.87214 -9.80569 -9.50149 -9.02043 -8.90089 -8.10663 -6.94667 -5.76616 -3.06370 0.39805 2.00573 2.56800 3.07889 3.28149 3.36673 3.43982 3.48181 3.49461 4.54600 4.55684 4.69250 4.76997 4.88779 4.91376 4.95210 5.13190 5.26438 5.52395 5.55476 5.57997 5.63986 5.79545 5.81588 5.88555 5.96985 6.10997 6.19755 6.40563 6.45637 6.51561 6.67563 7.10321 7.52708 7.67510 7.93463 8.24589 8.41591 9.53069 10.09588 10.45369 11.45753 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.041086 B = 0.002730 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.339584 B =10252.248509 C =10710.805978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.104 0.896 13 O -0.553 6.553 14 C 0.092 3.908 15 N -0.716 5.716 16 C 0.534 3.466 17 O -0.531 6.531 18 C -0.200 4.200 19 C 0.000 4.000 20 C 0.009 3.991 21 C -0.184 4.184 22 C -0.227 4.227 23 C -0.016 4.016 24 O -0.133 6.133 25 H 0.256 0.744 26 H 0.388 0.612 27 H 0.028 0.972 28 H 0.023 0.977 29 H 0.373 0.627 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.405 0.595 33 H 0.139 0.861 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.132 -25.748 -0.540 25.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.371 5.371 10 C -0.001 4.001 11 C 0.029 3.971 12 H 0.122 0.878 13 O -0.358 6.358 14 C -0.033 4.033 15 N -0.368 5.368 16 C 0.324 3.676 17 O -0.410 6.410 18 C -0.221 4.221 19 C -0.020 4.020 20 C -0.041 4.041 21 C -0.203 4.203 22 C -0.246 4.246 23 C -0.087 4.087 24 O -0.026 6.026 25 H 0.066 0.934 26 H 0.223 0.777 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.220 0.780 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.240 0.760 33 H 0.156 0.844 34 H 0.172 0.828 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.498 -25.419 -0.249 25.543 hybrid contribution 0.367 0.924 -0.159 1.006 sum 2.865 -24.495 -0.408 24.666 Atomic orbital electron populations 1.69664 1.05121 1.25818 1.57281 1.24762 0.95536 0.97737 1.02812 0.86249 0.78509 0.83430 0.77863 1.21238 1.21629 1.21227 1.19180 0.90975 0.84121 1.43292 0.91260 1.42237 1.06061 0.99408 1.89377 1.21199 0.93526 0.86597 0.98824 1.22400 0.94566 0.91915 0.88208 0.87774 1.86572 1.37548 1.96240 1.15424 1.22051 0.92262 0.85971 1.03030 1.45860 1.11075 1.05679 1.74179 1.17150 0.89005 0.83552 0.77937 1.90870 1.16573 1.84351 1.49214 1.22324 1.00766 0.93223 1.05763 1.20618 0.90541 0.97119 0.93756 1.19579 0.92146 0.95115 0.97303 1.22126 0.93978 1.00979 1.03225 1.21617 0.98664 1.02744 1.01611 1.24151 0.86368 0.96310 1.01858 1.84268 1.18786 1.49693 1.49903 0.93404 0.77727 0.95405 0.95938 0.78000 0.90569 0.91169 0.76024 0.84367 0.82778 0.83502 0.83676 0.78568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.52 13.06 55.49 0.72 -27.79 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.56 5.55 -59.91 -0.33 -18.89 16 10 C 0.13 2.50 5.90 -4.04 -0.02 2.48 16 11 C 0.09 1.38 3.09 -26.73 -0.08 1.30 16 12 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 13 O -0.55 -8.78 13.03 -35.23 -0.46 -9.24 16 14 C 0.09 1.24 5.34 -4.04 -0.02 1.22 16 15 N -0.72 -8.64 5.44 -63.24 -0.34 -8.98 16 16 C 0.53 6.97 7.36 -15.00 -0.11 6.86 16 17 O -0.53 -8.71 12.44 -19.66 -0.24 -8.96 16 18 C -0.20 -1.89 9.85 -39.25 -0.39 -2.28 16 19 C 0.00 0.00 9.95 -39.23 -0.39 -0.39 16 20 C 0.01 0.10 5.30 -38.40 -0.20 -0.10 16 21 C -0.18 -1.92 10.90 -38.90 -0.42 -2.35 16 22 C -0.23 -2.31 10.87 -39.90 -0.43 -2.75 16 23 C -0.02 -0.18 12.06 29.63 0.36 0.18 16 24 O -0.13 -1.80 7.85 -20.11 -0.16 -1.96 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.39 10.59 7.67 -40.82 -0.31 10.28 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.37 4.97 9.05 45.56 0.41 5.38 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.40 4.18 8.30 -40.82 -0.34 3.84 16 33 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.20 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 326.50 15.07 4.92 4.92 Total: -1.00 -35.72 326.50 -6.90 -42.61 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -4.01 Total: 14.10 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -1.97 Total: -3.36 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.05 Total: -55.67 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.86 Total: -20.15 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.72 -6.90 -42.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496928160.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.757 kcal (2) G-P(sol) polarization free energy of solvation -35.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds