Wall clock time and date at job start Tue Mar 31 2020 01:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00131 * 2 1 4 4 H 1.48504 * 109.46981 * 239.99730 * 3 2 1 5 5 H 1.48498 * 109.46945 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47286 * 119.99839 * 3 2 1 7 7 C 1.38815 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00539 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99445 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99587 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46796 * 179.97438 * 10 9 7 12 12 H 1.08990 * 109.47029 * 305.00000 * 11 10 9 13 13 O 1.42903 * 109.47104 * 64.99903 * 11 10 9 14 14 C 1.53002 * 109.46893 * 184.99739 * 11 10 9 15 15 N 1.46505 * 109.47017 * 180.02562 * 14 11 10 16 16 C 1.34774 * 119.99754 * 180.02562 * 15 14 11 17 17 O 1.21771 * 120.00346 * 0.02562 * 16 15 14 18 18 C 1.41555 * 119.99391 * 179.97438 * 16 15 14 19 19 C 1.35628 * 119.99777 * 173.24242 * 18 16 15 20 20 C 1.41608 * 119.99764 * 351.25558 * 19 18 16 21 21 C 1.37953 * 126.09960 * 139.49462 * 20 19 18 22 22 C 1.40318 * 106.52671 * 179.72954 * 21 20 19 23 23 C 1.35151 * 107.20744 * 0.40886 * 22 21 20 24 24 O 1.34024 * 109.03196 * 359.58507 * 23 22 21 25 25 H 0.96999 * 119.99954 * 0.02562 * 1 2 3 26 26 H 0.97004 * 119.99938 * 0.02562 * 9 7 2 27 27 H 1.08991 * 109.47489 * 60.00150 * 10 9 7 28 28 H 1.09003 * 109.47117 * 299.99410 * 10 9 7 29 29 H 0.96705 * 114.00049 * 59.99551 * 13 11 10 30 30 H 1.09000 * 109.46818 * 60.00302 * 14 11 10 31 31 H 1.09003 * 109.47370 * 300.00232 * 14 11 10 32 32 H 0.97001 * 119.99571 * 359.97438 * 15 14 11 33 33 H 1.07993 * 120.00509 * 353.24404 * 18 16 15 34 34 H 1.07994 * 120.00092 * 171.26353 * 19 18 16 35 35 H 1.08000 * 126.73876 * 0.02562 * 21 20 19 36 36 H 1.08000 * 126.39810 * 180.28606 * 22 21 20 37 37 H 1.07998 * 125.48997 * 179.84645 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0021 12 1 0.3793 -4.7122 0.8435 13 8 0.3219 -4.8125 -1.2193 14 6 1.8245 -6.1411 0.1289 15 7 0.8725 -7.2547 0.1287 16 6 1.3184 -8.5223 0.2318 17 8 2.5124 -8.7421 0.3256 18 6 0.3984 -9.5982 0.2321 19 6 0.8501 -10.8766 0.1975 20 6 2.2243 -11.1362 -0.0252 21 6 2.9841 -12.0949 0.6126 22 6 4.2777 -12.0000 0.0774 23 6 4.2600 -11.0051 -0.8372 24 8 3.0242 -10.4903 -0.8992 25 1 -0.4850 0.8400 -0.0004 26 1 0.3555 -2.3880 -0.0002 27 1 2.6840 -3.7142 0.8921 28 1 2.6853 -3.7149 -0.8879 29 1 0.8682 -4.9044 -2.0119 30 1 2.3904 -6.1465 1.0605 31 1 2.5090 -6.2485 -0.7126 32 1 -0.0787 -7.0795 0.0551 33 1 -0.6630 -9.4012 0.2599 34 1 0.1618 -11.6965 0.3395 35 1 2.6480 -12.7863 1.3711 36 1 5.1291 -12.6071 0.3475 37 1 5.1046 -10.6803 -1.4267 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496928160.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:31 Heat of formation + Delta-G solvation = -60.615275 kcal Electronic energy + Delta-G solvation = -20947.888619 eV Core-core repulsion = 17499.071318 eV Total energy + Delta-G solvation = -3448.817301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.28488 -40.87618 -38.99321 -36.11807 -35.36819 -34.92035 -33.70994 -33.22352 -30.96537 -29.52857 -27.24168 -25.20354 -23.85519 -22.77822 -22.53291 -21.96415 -20.46755 -19.28070 -18.88626 -17.86432 -17.41489 -17.17059 -16.80002 -16.47928 -16.33467 -15.76980 -15.53630 -15.12172 -14.97138 -14.74014 -14.18735 -14.02724 -13.86604 -13.68658 -13.38680 -13.28166 -13.11397 -12.96863 -12.72859 -12.21607 -11.99510 -11.82644 -11.20406 -11.02695 -10.98708 -10.84965 -10.67588 -10.05099 -9.03516 -8.88270 -7.96356 -5.26319 -0.34281 1.21036 1.46668 1.49962 1.56235 1.79203 2.25576 2.33850 2.54222 2.56725 3.34639 3.47834 3.59224 3.87287 3.98778 4.06608 4.17931 4.19734 4.24202 4.39784 4.53312 4.60162 4.69077 4.85940 4.89907 4.91006 5.09452 5.16632 5.19308 5.39250 5.42151 5.46679 5.70219 6.24672 6.32043 6.59999 6.77034 7.29832 7.31702 8.06322 8.30020 9.26722 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.041086 B = 0.002730 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.339584 B =10252.248509 C =10710.805978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.252 4.252 8 H 0.076 0.924 9 N -0.740 5.740 10 C 0.123 3.877 11 C 0.109 3.891 12 H 0.101 0.899 13 O -0.562 6.562 14 C 0.106 3.894 15 N -0.710 5.710 16 C 0.527 3.473 17 O -0.571 6.571 18 C -0.214 4.214 19 C 0.009 3.991 20 C -0.019 4.019 21 C -0.190 4.190 22 C -0.234 4.234 23 C -0.038 4.038 24 O -0.162 6.162 25 H 0.252 0.748 26 H 0.377 0.623 27 H 0.032 0.968 28 H 0.030 0.970 29 H 0.384 0.616 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.414 0.586 33 H 0.174 0.826 34 H 0.198 0.802 35 H 0.171 0.829 36 H 0.167 0.833 37 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.258 -27.067 -0.355 27.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.384 4.384 8 H 0.094 0.906 9 N -0.383 5.383 10 C -0.005 4.005 11 C 0.050 3.950 12 H 0.118 0.882 13 O -0.368 6.368 14 C -0.019 4.019 15 N -0.362 5.362 16 C 0.318 3.682 17 O -0.453 6.453 18 C -0.234 4.234 19 C -0.010 4.010 20 C -0.069 4.069 21 C -0.210 4.210 22 C -0.253 4.253 23 C -0.107 4.107 24 O -0.056 6.056 25 H 0.061 0.939 26 H 0.209 0.791 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.233 0.767 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.251 0.749 33 H 0.191 0.809 34 H 0.215 0.785 35 H 0.189 0.811 36 H 0.185 0.815 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 2.641 -26.773 -0.072 26.903 hybrid contribution 0.406 1.219 -0.226 1.305 sum 3.047 -25.554 -0.299 25.736 Atomic orbital electron populations 1.69824 1.06669 1.26266 1.59063 1.25616 0.96430 1.01249 1.03430 0.85181 0.77191 0.78946 0.78237 1.20325 1.22019 1.20304 1.19612 0.91508 0.85369 1.41863 0.90641 1.42418 1.05735 1.00752 1.89409 1.21400 0.94259 0.85827 0.98977 1.22078 0.93461 0.91322 0.88179 0.88163 1.86550 1.38104 1.96206 1.15973 1.21733 0.92094 0.85468 1.02606 1.45767 1.11285 1.05176 1.73964 1.17774 0.89125 0.84275 0.76989 1.90855 1.18396 1.84872 1.51150 1.22462 1.01754 0.92151 1.07037 1.21208 0.89881 0.98253 0.91669 1.20271 0.93460 0.95502 0.97663 1.22546 0.94007 1.01008 1.03394 1.22001 0.99474 1.02665 1.01182 1.24754 0.86455 0.96763 1.02735 1.84239 1.19794 1.50719 1.50858 0.93899 0.79101 0.95026 0.95260 0.76677 0.91178 0.91442 0.74866 0.80876 0.78507 0.81133 0.81538 0.76506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.98 13.06 21.65 0.28 -59.70 16 2 C -0.07 -4.34 5.50 84.86 0.47 -3.88 16 3 Si 0.98 46.38 29.55 68.60 2.03 48.41 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.74 -37.91 5.55 -343.45 -1.91 -39.81 16 10 C 0.12 4.76 5.90 86.38 0.51 5.27 16 11 C 0.11 3.33 3.09 30.60 0.09 3.43 16 12 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 13 O -0.56 -17.33 13.03 -148.98 -1.94 -19.27 16 14 C 0.11 2.81 5.34 86.38 0.46 3.27 16 15 N -0.71 -16.33 5.44 -472.17 -2.57 -18.89 16 16 C 0.53 13.27 7.36 85.06 0.63 13.89 16 17 O -0.57 -18.71 12.44 19.12 0.24 -18.47 16 18 C -0.21 -3.59 9.85 22.48 0.22 -3.37 16 19 C 0.01 0.14 9.95 22.50 0.22 0.37 16 20 C -0.02 -0.43 5.30 23.03 0.12 -0.31 16 21 C -0.19 -3.71 10.90 22.71 0.25 -3.46 16 22 C -0.23 -4.54 10.87 22.06 0.24 -4.30 16 23 C -0.04 -0.81 12.06 67.11 0.81 0.00 16 24 O -0.16 -4.36 7.85 17.51 0.14 -4.22 16 25 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 26 H 0.38 20.79 7.67 -92.71 -0.71 20.08 16 27 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.38 9.84 9.05 -74.05 -0.67 9.17 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.41 7.89 8.30 -92.71 -0.77 7.12 16 33 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.20 1.13 8.06 -2.91 -0.02 1.10 16 35 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.22 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -77.35 326.50 0.09 -77.26 By element: Atomic # 1 Polarization: 38.21 SS G_CDS: -1.04 Total: 37.17 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 4.86 Total: -2.47 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -4.19 Total: -118.40 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: -1.57 Total: -41.97 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -77.35 0.09 -77.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496928160.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.643 kcal (2) G-P(sol) polarization free energy of solvation -77.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds