Wall clock time and date at job start Tue Mar 31 2020 01:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 119.99830 * 2 1 4 4 H 1.48496 * 109.47215 * 240.00166 * 3 2 1 5 5 H 1.48500 * 109.47134 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47135 * 120.00055 * 3 2 1 7 7 C 1.38807 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99942 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00460 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00440 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47263 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47121 * 59.99997 * 11 10 9 13 13 O 1.42892 * 109.47371 * 299.99971 * 11 10 9 14 14 C 1.53002 * 109.46910 * 179.97438 * 11 10 9 15 15 N 1.46505 * 109.47017 * 185.00220 * 14 11 10 16 16 C 1.34774 * 119.99754 * 180.02562 * 15 14 11 17 17 O 1.21771 * 120.00346 * 0.02562 * 16 15 14 18 18 C 1.41555 * 119.99391 * 179.97438 * 16 15 14 19 19 C 1.35628 * 119.99777 * 173.24242 * 18 16 15 20 20 C 1.41608 * 119.99764 * 351.25558 * 19 18 16 21 21 C 1.37953 * 126.09960 * 139.49462 * 20 19 18 22 22 C 1.40318 * 106.52671 * 179.72954 * 21 20 19 23 23 C 1.35151 * 107.20744 * 0.40886 * 22 21 20 24 24 O 1.34024 * 109.03196 * 359.58507 * 23 22 21 25 25 H 0.96996 * 120.00421 * 359.97438 * 1 2 3 26 26 H 0.96999 * 119.99494 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47055 * 59.99746 * 10 9 7 28 28 H 1.09004 * 109.46734 * 299.99973 * 10 9 7 29 29 H 0.96705 * 114.00049 * 300.00766 * 13 11 10 30 30 H 1.09000 * 109.46818 * 65.00272 * 14 11 10 31 31 H 1.09003 * 109.47370 * 305.00202 * 14 11 10 32 32 H 0.97001 * 119.99571 * 359.97438 * 15 14 11 33 33 H 1.07993 * 120.00509 * 353.24404 * 18 16 15 34 34 H 1.07994 * 120.00092 * 171.26353 * 19 18 16 35 35 H 1.08000 * 126.73876 * 0.02562 * 21 20 19 36 36 H 1.08000 * 126.39810 * 180.28606 * 22 21 20 37 37 H 1.07998 * 125.48997 * 179.84645 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0639 -4.8197 -0.0031 12 1 0.4369 -4.7614 -0.8928 13 8 0.2428 -4.7449 1.1639 14 6 1.8290 -6.1447 -0.0050 15 7 0.8814 -7.2556 -0.1258 16 6 1.3315 -8.5257 -0.1483 17 8 2.5257 -8.7501 -0.0677 18 6 0.4159 -9.5990 -0.2645 19 6 0.8729 -10.8658 -0.4250 20 6 2.2497 -11.0971 -0.6619 21 6 3.0085 -12.1132 -0.1187 22 6 4.3058 -11.9603 -0.6311 23 6 4.2911 -10.8778 -1.4402 24 8 3.0537 -10.3633 -1.4594 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3880 -0.0016 27 1 2.6848 -3.7153 0.8872 28 1 2.6848 -3.7137 -0.8928 29 1 0.7353 -4.7907 1.9949 30 1 2.3874 -6.2431 0.9260 31 1 2.5205 -6.1639 -0.8473 32 1 -0.0699 -7.0768 -0.1888 33 1 -0.6465 -9.4092 -0.2253 34 1 0.1868 -11.6982 -0.3724 35 1 2.6694 -12.8790 0.5631 36 1 5.1575 -12.5890 -0.4173 37 1 5.1389 -10.4921 -1.9869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496928161.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:34 Heat of formation + Delta-G solvation = -32.791689 kcal Electronic energy + Delta-G solvation = -20936.993173 eV Core-core repulsion = 17489.382393 eV Total energy + Delta-G solvation = -3447.610780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.48762 -39.87148 -37.67078 -34.57753 -34.12383 -33.93024 -32.91656 -31.31994 -29.68243 -28.47879 -25.73628 -23.87121 -22.40879 -21.74636 -21.41859 -21.03271 -19.56840 -18.10481 -17.16030 -16.72651 -16.44894 -15.95192 -15.90268 -15.26346 -14.71212 -14.46703 -14.36782 -14.07718 -13.63020 -13.28648 -12.95824 -12.94477 -12.69330 -12.64372 -12.39361 -12.30838 -11.84574 -10.96102 -10.80755 -10.61047 -10.30985 -10.20466 -10.09262 -9.87786 -9.80011 -9.48969 -9.02503 -8.89894 -8.10636 -6.94316 -5.76280 -3.06087 0.39721 2.00656 2.56848 3.07732 3.28952 3.35997 3.44065 3.48275 3.49543 4.54403 4.55623 4.69936 4.76585 4.88666 4.91433 4.95320 5.13141 5.27256 5.52298 5.55613 5.57974 5.63047 5.79541 5.81580 5.88646 5.97118 6.10990 6.20392 6.40545 6.45467 6.51409 6.68026 7.10429 7.52081 7.67601 7.94956 8.24242 8.42019 9.53484 10.10186 10.46230 11.46046 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.039651 B = 0.002743 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.991398 B =10207.063272 C =10734.338174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.104 0.896 13 O -0.552 6.552 14 C 0.092 3.908 15 N -0.717 5.717 16 C 0.534 3.466 17 O -0.531 6.531 18 C -0.200 4.200 19 C 0.000 4.000 20 C 0.009 3.991 21 C -0.184 4.184 22 C -0.227 4.227 23 C -0.016 4.016 24 O -0.133 6.133 25 H 0.256 0.744 26 H 0.389 0.611 27 H 0.022 0.978 28 H 0.028 0.972 29 H 0.373 0.627 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.404 0.596 33 H 0.139 0.861 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.162 -25.636 -1.182 25.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.371 5.371 10 C -0.002 4.002 11 C 0.029 3.971 12 H 0.121 0.879 13 O -0.357 6.357 14 C -0.033 4.033 15 N -0.368 5.368 16 C 0.324 3.676 17 O -0.410 6.410 18 C -0.221 4.221 19 C -0.020 4.020 20 C -0.042 4.042 21 C -0.203 4.203 22 C -0.247 4.247 23 C -0.087 4.087 24 O -0.026 6.026 25 H 0.066 0.934 26 H 0.224 0.776 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.221 0.779 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.239 0.761 33 H 0.156 0.844 34 H 0.172 0.828 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.557 -25.319 -1.735 25.507 hybrid contribution 0.343 0.920 0.529 1.116 sum 2.901 -24.399 -1.206 24.600 Atomic orbital electron populations 1.69667 1.05112 1.25811 1.57276 1.24761 0.95537 0.97731 1.02826 0.86248 0.78504 0.83437 0.77858 1.21235 1.21633 1.21243 1.19177 0.90969 0.84125 1.43289 0.91278 1.42227 1.06123 0.99360 1.89366 1.21193 0.93536 0.86640 0.98840 1.22383 0.93258 0.91840 0.89598 0.87850 1.86569 1.37017 1.96429 1.15710 1.22064 0.92377 0.85992 1.02841 1.45878 1.11074 1.05582 1.74281 1.17149 0.88967 0.83509 0.78008 1.90870 1.16497 1.84237 1.49396 1.22326 1.00792 0.93429 1.05554 1.20619 0.90498 0.97309 0.93591 1.19580 0.92058 0.92910 0.99621 1.22126 0.93930 1.00296 1.03949 1.21617 0.98598 1.01254 1.03185 1.24155 0.86337 0.95724 1.02439 1.84270 1.18557 1.46562 1.53253 0.93411 0.77642 0.95982 0.95402 0.77947 0.91197 0.90533 0.76092 0.84364 0.82777 0.83504 0.83675 0.78557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -18.55 5.49 -59.90 -0.33 -18.88 16 10 C 0.13 2.49 5.92 -4.04 -0.02 2.46 16 11 C 0.09 1.39 3.08 -26.73 -0.08 1.30 16 12 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 13 O -0.55 -8.88 13.03 -35.23 -0.46 -9.34 16 14 C 0.09 1.25 5.31 -4.04 -0.02 1.23 16 15 N -0.72 -8.64 5.49 -63.24 -0.35 -8.99 16 16 C 0.53 6.98 7.36 -15.00 -0.11 6.87 16 17 O -0.53 -8.71 12.44 -19.66 -0.24 -8.96 16 18 C -0.20 -1.90 9.85 -39.25 -0.39 -2.28 16 19 C 0.00 0.00 9.95 -39.23 -0.39 -0.39 16 20 C 0.01 0.10 5.30 -38.40 -0.20 -0.10 16 21 C -0.18 -1.92 10.90 -38.90 -0.42 -2.34 16 22 C -0.23 -2.32 10.87 -39.90 -0.43 -2.75 16 23 C -0.02 -0.18 12.06 29.63 0.36 0.18 16 24 O -0.13 -1.81 7.85 -20.11 -0.16 -1.96 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.39 10.62 7.54 -40.82 -0.31 10.32 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.37 5.08 9.05 45.56 0.41 5.50 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.40 4.15 8.43 -40.82 -0.34 3.81 16 33 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.20 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 326.50 15.07 4.92 4.92 Total: -1.00 -35.75 326.50 -6.90 -42.64 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -4.01 Total: 14.18 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -1.97 Total: -3.36 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.05 Total: -55.67 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.86 Total: -20.26 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.75 -6.90 -42.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496928161.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.851 kcal (2) G-P(sol) polarization free energy of solvation -35.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds