Wall clock time and date at job start Tue Mar 31 2020 01:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 119.99830 * 2 1 4 4 H 1.48496 * 109.47215 * 240.00166 * 3 2 1 5 5 H 1.48500 * 109.47134 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47135 * 120.00055 * 3 2 1 7 7 C 1.38807 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99942 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00460 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00440 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47263 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47121 * 59.99997 * 11 10 9 13 13 O 1.42892 * 109.47371 * 299.99971 * 11 10 9 14 14 C 1.53002 * 109.46910 * 179.97438 * 11 10 9 15 15 N 1.46505 * 109.47017 * 185.00220 * 14 11 10 16 16 C 1.34774 * 119.99754 * 180.02562 * 15 14 11 17 17 O 1.21771 * 120.00346 * 0.02562 * 16 15 14 18 18 C 1.41555 * 119.99391 * 179.97438 * 16 15 14 19 19 C 1.35628 * 119.99777 * 173.24242 * 18 16 15 20 20 C 1.41608 * 119.99764 * 351.25558 * 19 18 16 21 21 C 1.37953 * 126.09960 * 139.49462 * 20 19 18 22 22 C 1.40318 * 106.52671 * 179.72954 * 21 20 19 23 23 C 1.35151 * 107.20744 * 0.40886 * 22 21 20 24 24 O 1.34024 * 109.03196 * 359.58507 * 23 22 21 25 25 H 0.96996 * 120.00421 * 359.97438 * 1 2 3 26 26 H 0.96999 * 119.99494 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47055 * 59.99746 * 10 9 7 28 28 H 1.09004 * 109.46734 * 299.99973 * 10 9 7 29 29 H 0.96705 * 114.00049 * 300.00766 * 13 11 10 30 30 H 1.09000 * 109.46818 * 65.00272 * 14 11 10 31 31 H 1.09003 * 109.47370 * 305.00202 * 14 11 10 32 32 H 0.97001 * 119.99571 * 359.97438 * 15 14 11 33 33 H 1.07993 * 120.00509 * 353.24404 * 18 16 15 34 34 H 1.07994 * 120.00092 * 171.26353 * 19 18 16 35 35 H 1.08000 * 126.73876 * 0.02562 * 21 20 19 36 36 H 1.08000 * 126.39810 * 180.28606 * 22 21 20 37 37 H 1.07998 * 125.48997 * 179.84645 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0639 -4.8197 -0.0031 12 1 0.4369 -4.7614 -0.8928 13 8 0.2428 -4.7449 1.1639 14 6 1.8290 -6.1447 -0.0050 15 7 0.8814 -7.2556 -0.1258 16 6 1.3315 -8.5257 -0.1483 17 8 2.5257 -8.7501 -0.0677 18 6 0.4159 -9.5990 -0.2645 19 6 0.8729 -10.8658 -0.4250 20 6 2.2497 -11.0971 -0.6619 21 6 3.0085 -12.1132 -0.1187 22 6 4.3058 -11.9603 -0.6311 23 6 4.2911 -10.8778 -1.4402 24 8 3.0537 -10.3633 -1.4594 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3880 -0.0016 27 1 2.6848 -3.7153 0.8872 28 1 2.6848 -3.7137 -0.8928 29 1 0.7353 -4.7907 1.9949 30 1 2.3874 -6.2431 0.9260 31 1 2.5205 -6.1639 -0.8473 32 1 -0.0699 -7.0768 -0.1888 33 1 -0.6465 -9.4092 -0.2253 34 1 0.1868 -11.6982 -0.3724 35 1 2.6694 -12.8790 0.5631 36 1 5.1575 -12.5890 -0.4173 37 1 5.1389 -10.4921 -1.9869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496928161.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:34 Heat of formation + Delta-G solvation = -60.586402 kcal Electronic energy + Delta-G solvation = -20938.198442 eV Core-core repulsion = 17489.382393 eV Total energy + Delta-G solvation = -3448.816049 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.28659 -40.87514 -38.99442 -36.10333 -35.38242 -34.92456 -33.71121 -33.21028 -30.96836 -29.52777 -27.24202 -25.20486 -23.85528 -22.77609 -22.53340 -21.96541 -20.46629 -19.27964 -18.88627 -17.86223 -17.41218 -17.17014 -16.82523 -16.48554 -16.28928 -15.78752 -15.54958 -15.10415 -14.95825 -14.75882 -14.20333 -14.02584 -13.84634 -13.68348 -13.38763 -13.30002 -13.09886 -12.96410 -12.72915 -12.21511 -11.99164 -11.82238 -11.21456 -11.02335 -10.98377 -10.84650 -10.67248 -10.05473 -9.03196 -8.88387 -7.96073 -5.26061 -0.34395 1.20964 1.46739 1.50017 1.56287 1.79210 2.24817 2.34889 2.54036 2.56700 3.34787 3.46401 3.60148 3.87201 4.00317 4.06175 4.17770 4.19309 4.24184 4.40141 4.53340 4.60151 4.69075 4.85863 4.89784 4.90698 5.09365 5.16590 5.19033 5.39160 5.42357 5.46713 5.70201 6.24911 6.32010 6.59608 6.77224 7.29583 7.32055 8.06906 8.30809 9.26978 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.039651 B = 0.002743 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.991398 B =10207.063272 C =10734.338174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.252 4.252 8 H 0.075 0.925 9 N -0.740 5.740 10 C 0.122 3.878 11 C 0.109 3.891 12 H 0.101 0.899 13 O -0.562 6.562 14 C 0.107 3.893 15 N -0.710 5.710 16 C 0.527 3.473 17 O -0.571 6.571 18 C -0.214 4.214 19 C 0.009 3.991 20 C -0.019 4.019 21 C -0.190 4.190 22 C -0.234 4.234 23 C -0.038 4.038 24 O -0.162 6.162 25 H 0.252 0.748 26 H 0.377 0.623 27 H 0.029 0.971 28 H 0.032 0.968 29 H 0.384 0.616 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.414 0.586 33 H 0.174 0.826 34 H 0.198 0.802 35 H 0.171 0.829 36 H 0.167 0.833 37 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.272 -26.988 -0.911 27.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.093 0.907 9 N -0.383 5.383 10 C -0.005 4.005 11 C 0.049 3.951 12 H 0.119 0.881 13 O -0.368 6.368 14 C -0.019 4.019 15 N -0.362 5.362 16 C 0.318 3.682 17 O -0.453 6.453 18 C -0.234 4.234 19 C -0.010 4.010 20 C -0.069 4.069 21 C -0.209 4.209 22 C -0.253 4.253 23 C -0.107 4.107 24 O -0.057 6.057 25 H 0.061 0.939 26 H 0.210 0.790 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.233 0.767 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.251 0.749 33 H 0.191 0.809 34 H 0.215 0.785 35 H 0.189 0.811 36 H 0.185 0.815 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 2.683 -26.705 -1.458 26.879 hybrid contribution 0.387 1.227 0.453 1.364 sum 3.071 -25.478 -1.005 25.682 Atomic orbital electron populations 1.69827 1.06663 1.26257 1.59067 1.25613 0.96427 1.01240 1.03444 0.85180 0.77185 0.78954 0.78232 1.20315 1.22027 1.20328 1.19609 0.91500 0.85373 1.41853 0.90661 1.42403 1.05793 1.00698 1.89395 1.21393 0.94272 0.85877 0.98985 1.22077 0.92202 0.91231 0.89548 0.88087 1.86548 1.37519 1.96405 1.16353 1.21745 0.92166 0.85478 1.02475 1.45785 1.11312 1.05082 1.74056 1.17775 0.89079 0.84223 0.77086 1.90855 1.18319 1.84770 1.51321 1.22464 1.01795 0.92333 1.06822 1.21210 0.89825 0.98489 0.91478 1.20276 0.93375 0.93233 1.00035 1.22546 0.93948 1.00492 1.03931 1.22001 0.99421 1.01203 1.02671 1.24754 0.86422 0.96301 1.03249 1.84241 1.19576 1.47669 1.54167 0.93908 0.79020 0.95306 0.95038 0.76693 0.91413 0.91196 0.74901 0.80865 0.78496 0.81106 0.81522 0.76537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.99 13.06 21.65 0.28 -59.71 16 2 C -0.07 -4.34 5.50 84.86 0.47 -3.88 16 3 Si 0.98 46.39 29.55 68.60 2.03 48.42 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.25 -14.22 9.99 84.03 0.84 -13.38 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.74 -37.87 5.49 -343.44 -1.89 -39.76 16 10 C 0.12 4.74 5.92 86.38 0.51 5.25 16 11 C 0.11 3.33 3.08 30.59 0.09 3.42 16 12 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 13 O -0.56 -17.55 13.03 -148.98 -1.94 -19.49 16 14 C 0.11 2.82 5.31 86.38 0.46 3.28 16 15 N -0.71 -16.34 5.49 -472.17 -2.59 -18.93 16 16 C 0.53 13.27 7.36 85.06 0.63 13.89 16 17 O -0.57 -18.72 12.44 19.12 0.24 -18.48 16 18 C -0.21 -3.59 9.85 22.48 0.22 -3.37 16 19 C 0.01 0.14 9.95 22.50 0.22 0.37 16 20 C -0.02 -0.43 5.30 23.03 0.12 -0.31 16 21 C -0.19 -3.69 10.90 22.71 0.25 -3.45 16 22 C -0.23 -4.54 10.87 22.06 0.24 -4.30 16 23 C -0.04 -0.82 12.06 67.11 0.81 -0.01 16 24 O -0.16 -4.40 7.85 17.51 0.14 -4.26 16 25 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 26 H 0.38 20.84 7.54 -92.71 -0.70 20.14 16 27 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.38 10.07 9.05 -74.05 -0.67 9.40 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.41 7.83 8.43 -92.71 -0.78 7.05 16 33 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.20 1.13 8.06 -2.91 -0.02 1.10 16 35 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 36 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.22 3.29 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -77.43 326.50 0.09 -77.34 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: -1.04 Total: 37.34 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 4.86 Total: -2.47 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -4.20 Total: -118.40 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -1.57 Total: -42.23 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -77.43 0.09 -77.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496928161.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.753 kcal (2) G-P(sol) polarization free energy of solvation -77.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds