Wall clock time and date at job start Tue Mar 31 2020 01:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00161 * 2 1 4 4 H 1.48498 * 109.47427 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47212 * 300.00595 * 3 2 1 6 6 H 1.48501 * 109.46932 * 59.99900 * 3 2 1 7 7 C 1.38812 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00090 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99699 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46900 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47164 * 60.00014 * 11 10 9 13 13 O 1.42903 * 109.47171 * 299.99748 * 11 10 9 14 14 C 1.53003 * 109.47376 * 180.02562 * 11 10 9 15 15 N 1.46494 * 109.47283 * 185.00021 * 14 11 10 16 16 C 1.34779 * 119.99921 * 179.97438 * 15 14 11 17 17 O 1.21585 * 120.00024 * 0.02562 * 16 15 14 18 18 C 1.47534 * 119.99839 * 179.97438 * 16 15 14 19 19 C 1.39710 * 120.19552 * 0.02562 * 18 16 15 20 20 C 1.37786 * 119.91086 * 179.97438 * 19 18 16 21 21 C 1.38542 * 120.29984 * 0.02562 * 20 19 18 22 22 C 1.38056 * 120.39418 * 359.97120 * 21 20 19 23 23 C 1.38718 * 120.08065 * 359.75187 * 22 21 20 24 24 O 1.35652 * 120.15120 * 180.27637 * 23 22 21 25 25 H 0.97001 * 119.99921 * 359.97438 * 1 2 3 26 26 H 0.96996 * 119.99991 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.47200 * 60.00130 * 10 9 7 28 28 H 1.08997 * 109.47487 * 300.00184 * 10 9 7 29 29 H 0.96700 * 114.00311 * 300.00378 * 13 11 10 30 30 H 1.09005 * 109.46682 * 304.99749 * 14 11 10 31 31 H 1.08999 * 109.47221 * 64.99915 * 14 11 10 32 32 H 0.96999 * 120.00388 * 359.97438 * 15 14 11 33 33 H 1.07998 * 120.04186 * 359.94796 * 19 18 16 34 34 H 1.08003 * 119.85192 * 179.97438 * 20 19 18 35 35 H 1.07996 * 119.80712 * 179.97438 * 21 20 19 36 36 H 1.07992 * 119.96089 * 180.02562 * 22 21 20 37 37 H 0.96698 * 113.99739 * 270.25467 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 1 0.4368 -4.7613 -0.8918 13 8 0.2428 -4.7448 1.1651 14 6 1.8288 -6.1448 -0.0026 15 7 0.8814 -7.2555 -0.1234 16 6 1.3315 -8.5257 -0.1458 17 8 2.5238 -8.7497 -0.0654 18 6 0.3773 -9.6444 -0.2669 19 6 -0.9937 -9.3918 -0.3590 20 6 -1.8796 -10.4409 -0.4724 21 6 -1.4174 -11.7468 -0.4950 22 6 -0.0653 -12.0108 -0.4049 23 6 0.8413 -10.9665 -0.2960 24 8 2.1705 -11.2240 -0.2130 25 1 -0.4850 0.8401 0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 2.6854 -3.7149 0.8878 28 1 2.6841 -3.7141 -0.8921 29 1 0.7352 -4.7907 1.9961 30 1 2.5209 -6.1643 -0.8445 31 1 2.3866 -6.2426 0.9287 32 1 -0.0699 -7.0769 -0.1871 33 1 -1.3586 -8.3754 -0.3410 34 1 -2.9393 -10.2445 -0.5431 35 1 -2.1188 -12.5631 -0.5837 36 1 0.2874 -13.0313 -0.4236 37 1 2.4929 -11.3402 0.6913 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496943891.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:51 Heat of formation + Delta-G solvation = -90.232083 kcal Electronic energy + Delta-G solvation = -20906.804091 eV Core-core repulsion = 17456.702508 eV Total energy + Delta-G solvation = -3450.101582 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.63124 -38.89026 -37.51093 -36.94063 -34.39829 -34.00071 -31.86004 -31.18053 -30.12613 -28.93919 -25.64887 -23.95743 -22.93849 -22.31252 -21.44140 -20.48397 -18.83700 -17.85799 -17.16190 -16.62718 -16.17439 -15.87315 -15.72285 -15.27006 -14.80737 -14.73766 -14.46986 -14.27134 -13.75304 -13.45253 -12.99007 -12.83186 -12.58358 -12.50287 -12.30627 -12.03572 -11.85874 -11.01315 -10.96388 -10.84612 -10.63100 -10.15601 -9.99418 -9.81241 -9.49858 -9.44347 -9.14480 -8.97582 -8.91691 -6.95325 -5.77616 -3.07325 0.48482 0.88393 2.69321 3.04388 3.42597 3.45842 3.48257 3.50553 3.91917 4.43269 4.44125 4.53288 4.62353 4.70358 4.86105 4.96213 4.99817 5.23324 5.35499 5.46381 5.54456 5.59697 5.77078 5.82788 5.92345 5.95966 6.02409 6.18022 6.33706 6.37472 6.49763 6.65734 7.41961 7.44722 7.67867 7.91865 8.15124 8.40615 9.52419 10.08809 10.44774 11.44793 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.041480 B = 0.002803 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.858858 B = 9988.620452 C =10534.741665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.104 0.896 13 O -0.553 6.553 14 C 0.091 3.909 15 N -0.718 5.718 16 C 0.554 3.446 17 O -0.526 6.526 18 C -0.164 4.164 19 C -0.070 4.070 20 C -0.138 4.138 21 C -0.080 4.080 22 C -0.159 4.159 23 C 0.167 3.833 24 O -0.478 6.478 25 H 0.255 0.745 26 H 0.389 0.611 27 H 0.023 0.977 28 H 0.029 0.971 29 H 0.374 0.626 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.403 0.597 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.532 -25.024 1.075 25.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.371 5.371 10 C -0.002 4.002 11 C 0.029 3.971 12 H 0.122 0.878 13 O -0.357 6.357 14 C -0.033 4.033 15 N -0.371 5.371 16 C 0.341 3.659 17 O -0.404 6.404 18 C -0.168 4.168 19 C -0.088 4.088 20 C -0.156 4.156 21 C -0.098 4.098 22 C -0.178 4.178 23 C 0.120 3.880 24 O -0.289 6.289 25 H 0.065 0.935 26 H 0.224 0.776 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.221 0.779 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.239 0.761 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -2.996 -24.945 0.083 25.125 hybrid contribution 0.183 0.987 0.792 1.279 sum -2.813 -23.958 0.876 24.139 Atomic orbital electron populations 1.69688 1.05110 1.25570 1.57435 1.24766 0.95544 0.97748 1.02855 0.86106 0.78773 0.84021 0.77210 1.20539 1.21819 1.21813 1.19267 0.91036 0.84077 1.43030 0.91148 1.42240 1.06133 0.99374 1.89356 1.21191 0.93503 0.86580 0.98936 1.22397 0.93309 0.91774 0.89635 0.87793 1.86568 1.37032 1.96428 1.15721 1.22125 0.92318 0.85790 1.03100 1.45860 1.11225 1.05374 1.74604 1.18061 0.88042 0.82621 0.77175 1.90806 1.15965 1.84525 1.49072 1.20480 0.94080 0.93832 1.08408 1.21339 0.91512 1.00037 0.95943 1.21142 1.00248 0.92402 1.01806 1.21242 0.95074 0.97126 0.96344 1.21474 0.93133 0.99272 1.03877 1.18522 0.83963 0.90239 0.95250 1.84751 1.18675 1.92752 1.32741 0.93521 0.77645 0.95888 0.95325 0.77896 0.90301 0.90939 0.76135 0.84940 0.84986 0.85137 0.84764 0.74676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.73 -18.35 5.49 -59.91 -0.33 -18.68 16 10 C 0.13 2.45 5.92 -4.04 -0.02 2.42 16 11 C 0.09 1.35 3.09 -26.73 -0.08 1.27 16 12 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 13 O -0.55 -8.64 13.03 -35.23 -0.46 -9.10 16 14 C 0.09 1.21 5.31 -4.04 -0.02 1.19 16 15 N -0.72 -8.73 5.45 -61.35 -0.33 -9.07 16 16 C 0.55 7.54 7.76 -12.47 -0.10 7.45 16 17 O -0.53 -8.85 15.16 -16.59 -0.25 -9.10 16 18 C -0.16 -1.85 5.89 -104.84 -0.62 -2.46 16 19 C -0.07 -0.61 9.54 -39.20 -0.37 -0.98 16 20 C -0.14 -0.98 10.02 -39.63 -0.40 -1.38 16 21 C -0.08 -0.53 10.03 -39.54 -0.40 -0.93 16 22 C -0.16 -1.28 9.98 -39.47 -0.39 -1.67 16 23 C 0.17 1.78 6.72 -38.69 -0.26 1.52 16 24 O -0.48 -5.41 11.58 -40.53 -0.47 -5.87 16 25 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.39 10.50 7.54 -40.82 -0.31 10.20 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.37 4.90 9.05 45.56 0.41 5.31 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.40 4.20 6.50 -40.82 -0.27 3.93 16 33 H 0.13 0.95 6.40 -52.49 -0.34 0.61 16 34 H 0.13 0.64 8.06 -52.48 -0.42 0.21 16 35 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 36 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.40 2.92 9.06 45.56 0.41 3.33 16 LS Contribution 323.97 15.07 4.88 4.88 Total: -1.00 -35.57 323.97 -7.18 -42.76 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -3.01 Total: 15.36 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -2.91 Total: -1.03 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.06 Total: -55.34 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -1.18 Total: -24.07 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.57 -7.18 -42.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496943891.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.475 kcal (2) G-P(sol) polarization free energy of solvation -35.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds