Wall clock time and date at job start Tue Mar 31 2020 01:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00161 * 2 1 4 4 H 1.48498 * 109.47427 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47212 * 300.00595 * 3 2 1 6 6 H 1.48501 * 109.46932 * 59.99900 * 3 2 1 7 7 C 1.38812 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00090 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99699 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46900 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47164 * 60.00014 * 11 10 9 13 13 O 1.42903 * 109.47171 * 299.99748 * 11 10 9 14 14 C 1.53003 * 109.47376 * 180.02562 * 11 10 9 15 15 N 1.46494 * 109.47283 * 185.00021 * 14 11 10 16 16 C 1.34779 * 119.99921 * 179.97438 * 15 14 11 17 17 O 1.21585 * 120.00024 * 0.02562 * 16 15 14 18 18 C 1.47534 * 119.99839 * 179.97438 * 16 15 14 19 19 C 1.39710 * 120.19552 * 0.02562 * 18 16 15 20 20 C 1.37786 * 119.91086 * 179.97438 * 19 18 16 21 21 C 1.38542 * 120.29984 * 0.02562 * 20 19 18 22 22 C 1.38056 * 120.39418 * 359.97120 * 21 20 19 23 23 C 1.38718 * 120.08065 * 359.75187 * 22 21 20 24 24 O 1.35652 * 120.15120 * 180.27637 * 23 22 21 25 25 H 0.97001 * 119.99921 * 359.97438 * 1 2 3 26 26 H 0.96996 * 119.99991 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.47200 * 60.00130 * 10 9 7 28 28 H 1.08997 * 109.47487 * 300.00184 * 10 9 7 29 29 H 0.96700 * 114.00311 * 300.00378 * 13 11 10 30 30 H 1.09005 * 109.46682 * 304.99749 * 14 11 10 31 31 H 1.08999 * 109.47221 * 64.99915 * 14 11 10 32 32 H 0.96999 * 120.00388 * 359.97438 * 15 14 11 33 33 H 1.07998 * 120.04186 * 359.94796 * 19 18 16 34 34 H 1.08003 * 119.85192 * 179.97438 * 20 19 18 35 35 H 1.07996 * 119.80712 * 179.97438 * 21 20 19 36 36 H 1.07992 * 119.96089 * 180.02562 * 22 21 20 37 37 H 0.96698 * 113.99739 * 270.25467 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 1 0.4368 -4.7613 -0.8918 13 8 0.2428 -4.7448 1.1651 14 6 1.8288 -6.1448 -0.0026 15 7 0.8814 -7.2555 -0.1234 16 6 1.3315 -8.5257 -0.1458 17 8 2.5238 -8.7497 -0.0654 18 6 0.3773 -9.6444 -0.2669 19 6 -0.9937 -9.3918 -0.3590 20 6 -1.8796 -10.4409 -0.4724 21 6 -1.4174 -11.7468 -0.4950 22 6 -0.0653 -12.0108 -0.4049 23 6 0.8413 -10.9665 -0.2960 24 8 2.1705 -11.2240 -0.2130 25 1 -0.4850 0.8401 0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 2.6854 -3.7149 0.8878 28 1 2.6841 -3.7141 -0.8921 29 1 0.7352 -4.7907 1.9961 30 1 2.5209 -6.1643 -0.8445 31 1 2.3866 -6.2426 0.9287 32 1 -0.0699 -7.0769 -0.1871 33 1 -1.3586 -8.3754 -0.3410 34 1 -2.9393 -10.2445 -0.5431 35 1 -2.1188 -12.5631 -0.5837 36 1 0.2874 -13.0313 -0.4236 37 1 2.4929 -11.3402 0.6913 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496943891.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:51 Heat of formation + Delta-G solvation = -119.671268 kcal Electronic energy + Delta-G solvation = -20908.080670 eV Core-core repulsion = 17456.702508 eV Total energy + Delta-G solvation = -3451.378161 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.48002 -39.84430 -38.77393 -37.66242 -36.07704 -35.32079 -33.24543 -32.46330 -30.80410 -30.34037 -27.20377 -25.11790 -24.12455 -23.31091 -22.76903 -21.48338 -19.66536 -19.22557 -18.63201 -17.78372 -17.27135 -16.90190 -16.57556 -16.44096 -16.10724 -15.77613 -15.72203 -15.37656 -15.05789 -14.87799 -14.31233 -14.18215 -13.88864 -13.38339 -13.21535 -13.10326 -12.95700 -12.79130 -12.64036 -12.13453 -11.98206 -11.83604 -11.73844 -11.14782 -10.99836 -10.76358 -10.28504 -9.98192 -9.66680 -9.02196 -7.95850 -5.25431 -0.22393 0.27257 1.47592 1.48226 1.58448 1.83465 2.03887 2.55453 2.73722 3.26047 3.35095 3.44206 3.55836 3.68098 3.85734 4.00676 4.11278 4.18131 4.34520 4.41082 4.43296 4.59375 4.65711 4.77581 4.89532 4.92039 5.18456 5.22970 5.31653 5.32924 5.44502 5.47797 5.79776 6.25562 6.45772 6.77339 6.79185 7.14799 7.32812 8.07579 8.31298 9.27541 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.041480 B = 0.002803 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.858858 B = 9988.620452 C =10534.741665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.248 4.248 8 H 0.076 0.924 9 N -0.740 5.740 10 C 0.122 3.878 11 C 0.109 3.891 12 H 0.102 0.898 13 O -0.562 6.562 14 C 0.103 3.897 15 N -0.709 5.709 16 C 0.551 3.449 17 O -0.567 6.567 18 C -0.192 4.192 19 C -0.073 4.073 20 C -0.137 4.137 21 C -0.069 4.069 22 C -0.162 4.162 23 C 0.146 3.854 24 O -0.499 6.499 25 H 0.252 0.748 26 H 0.378 0.622 27 H 0.032 0.968 28 H 0.033 0.967 29 H 0.385 0.615 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.412 0.588 33 H 0.144 0.856 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.152 0.848 37 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.317 -26.300 1.072 26.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.268 4.268 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.380 4.380 8 H 0.094 0.906 9 N -0.383 5.383 10 C -0.005 4.005 11 C 0.049 3.951 12 H 0.120 0.880 13 O -0.368 6.368 14 C -0.022 4.022 15 N -0.362 5.362 16 C 0.340 3.660 17 O -0.448 6.448 18 C -0.196 4.196 19 C -0.091 4.091 20 C -0.154 4.154 21 C -0.087 4.087 22 C -0.180 4.180 23 C 0.099 3.901 24 O -0.312 6.312 25 H 0.060 0.940 26 H 0.210 0.790 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.234 0.766 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.250 0.750 33 H 0.162 0.838 34 H 0.178 0.822 35 H 0.182 0.818 36 H 0.170 0.830 37 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -3.768 -26.250 0.093 26.519 hybrid contribution 0.397 1.262 0.805 1.548 sum -3.370 -24.988 0.898 25.230 Atomic orbital electron populations 1.69839 1.06625 1.26052 1.59259 1.25598 0.96426 1.01183 1.03574 0.85059 0.78187 0.79689 0.76709 1.19070 1.21978 1.21940 1.19673 0.91503 0.85321 1.41456 0.90621 1.42413 1.05820 1.00704 1.89363 1.21392 0.94231 0.85759 0.99167 1.22084 0.92270 0.91097 0.89640 0.88007 1.86547 1.37523 1.96393 1.16366 1.21871 0.92084 0.85137 1.03071 1.45741 1.11517 1.04818 1.74139 1.18499 0.88010 0.83291 0.76170 1.90772 1.17710 1.85110 1.51188 1.20433 0.94708 0.93178 1.11232 1.21538 0.90637 1.01368 0.95584 1.21528 1.01392 0.92082 1.00437 1.21688 0.94952 0.98073 0.93960 1.21710 0.93467 0.99421 1.03390 1.18851 0.84046 0.90866 0.96292 1.84703 1.19645 1.92855 1.34003 0.93956 0.78995 0.95058 0.94938 0.76584 0.90775 0.90708 0.75019 0.83817 0.82177 0.81765 0.83027 0.73473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.53 13.06 21.65 0.28 -59.25 16 2 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 6 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.74 -37.36 5.49 -343.46 -1.89 -39.25 16 10 C 0.12 4.64 5.92 86.38 0.51 5.15 16 11 C 0.11 3.24 3.09 30.60 0.09 3.34 16 12 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 13 O -0.56 -17.05 13.03 -148.98 -1.94 -18.99 16 14 C 0.10 2.68 5.31 86.38 0.46 3.14 16 15 N -0.71 -16.89 5.45 -466.27 -2.54 -19.44 16 16 C 0.55 15.10 7.76 86.69 0.67 15.77 16 17 O -0.57 -19.56 15.16 16.94 0.26 -19.30 16 18 C -0.19 -4.23 5.89 -20.01 -0.12 -4.35 16 19 C -0.07 -1.14 9.54 22.52 0.21 -0.93 16 20 C -0.14 -1.51 10.02 22.24 0.22 -1.29 16 21 C -0.07 -0.69 10.03 22.30 0.22 -0.47 16 22 C -0.16 -2.28 9.98 22.34 0.22 -2.06 16 23 C 0.15 3.05 6.72 22.85 0.15 3.20 16 24 O -0.50 -11.56 11.58 -68.75 -0.80 -12.36 16 25 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 26 H 0.38 20.57 7.54 -92.71 -0.70 19.87 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.39 9.69 9.05 -74.06 -0.67 9.02 16 30 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.41 8.18 6.50 -92.71 -0.60 7.58 16 33 H 0.14 1.80 6.40 -2.91 -0.02 1.78 16 34 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 35 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 36 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.41 6.39 9.06 -74.06 -0.67 5.72 16 Total: -1.00 -76.57 323.97 -2.14 -78.71 By element: Atomic # 1 Polarization: 38.52 SS G_CDS: -1.50 Total: 37.02 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 3.96 Total: 4.61 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -4.15 Total: -117.94 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -2.48 Total: -50.65 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -76.57 -2.14 -78.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496943891.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.965 kcal (2) G-P(sol) polarization free energy of solvation -76.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds