Wall clock time and date at job start Tue Mar 31 2020 02:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34185 * 127.02251 * 2 1 4 4 O 1.34210 * 109.12736 * 180.25933 * 3 2 1 5 5 C 1.33659 * 110.90983 * 0.02562 * 4 3 2 6 6 C 1.36416 * 108.39475 * 0.02562 * 5 4 3 7 7 C 1.47374 * 127.19396 * 179.97438 * 6 5 4 8 8 O 1.21615 * 120.00332 * 179.97438 * 7 6 5 9 9 N 1.34784 * 120.00000 * 0.02562 * 7 6 5 10 10 C 1.46498 * 119.99953 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.46830 * 179.97438 * 10 9 7 12 12 O 1.42913 * 112.94381 * 53.41021 * 11 10 9 13 13 C 1.53941 * 113.74654 * 281.67777 * 11 10 9 14 14 N 1.47582 * 86.11875 * 222.04607 * 13 11 10 15 15 C 1.36937 * 134.49431 * 204.64076 * 14 13 11 16 16 H 1.07997 * 119.99958 * 180.02562 * 15 14 13 17 17 C 1.38813 * 119.99948 * 359.97438 * 15 14 13 18 18 N 1.31620 * 119.99970 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00063 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46940 * 90.00179 * 19 17 15 21 21 H 1.48495 * 109.47048 * 210.00046 * 19 17 15 22 22 H 1.48495 * 109.46855 * 330.00295 * 19 17 15 23 23 C 1.47578 * 91.01326 * 24.63809 * 14 13 11 24 24 H 1.08996 * 109.47563 * 269.67944 * 1 2 3 25 25 H 1.08998 * 109.47203 * 29.69117 * 1 2 3 26 26 H 1.09005 * 109.46795 * 149.68487 * 1 2 3 27 27 H 1.08003 * 125.43164 * 0.22346 * 3 2 1 28 28 H 1.07990 * 125.80491 * 180.02562 * 5 4 3 29 29 H 0.96997 * 119.99823 * 359.97438 * 9 7 6 30 30 H 1.08993 * 109.47374 * 299.99648 * 10 9 7 31 31 H 1.08999 * 109.47066 * 59.99895 * 10 9 7 32 32 H 0.96699 * 113.99384 * 309.66762 * 12 11 10 33 33 H 1.09004 * 113.76905 * 336.34642 * 13 11 10 34 34 H 1.08998 * 113.77363 * 107.74166 * 13 11 10 35 35 H 0.96996 * 120.00250 * 179.97438 * 18 17 15 36 36 H 1.09001 * 113.77099 * 221.05789 * 23 14 13 37 37 H 1.09003 * 113.77043 * 89.66264 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6589 -0.0057 5 6 3.6624 -0.6758 -0.0102 6 6 2.3924 -1.1738 -0.0079 7 6 1.9915 -2.5919 -0.0117 8 8 0.8126 -2.8906 -0.0086 9 7 2.9314 -3.5579 -0.0177 10 6 2.5328 -4.9677 -0.0209 11 6 3.7822 -5.8508 -0.0282 12 8 4.6937 -5.5352 1.0264 13 6 4.4482 -5.9711 -1.4109 14 7 4.6143 -7.4031 -1.0950 15 6 5.4766 -8.3834 -1.5082 16 1 5.3852 -9.3845 -1.1135 17 6 6.4675 -8.0905 -2.4352 18 7 6.5785 -6.8705 -2.9165 19 14 7.6434 -9.4278 -2.9994 20 1 7.0791 -10.1131 -4.1898 21 1 8.9516 -8.8201 -3.3519 22 1 7.8341 -10.4132 -1.9050 23 6 3.4777 -7.3545 -0.1549 24 1 -0.3634 -0.0057 1.0276 25 1 -0.3633 0.8927 -0.5090 26 1 -0.3633 -0.8872 -0.5188 27 1 1.9893 2.1011 0.0034 28 1 4.5702 -1.2606 -0.0148 29 1 3.8716 -3.3197 -0.0198 30 1 1.9424 -5.1804 0.8702 31 1 1.9368 -5.1747 -0.9097 32 1 4.9104 -4.5950 1.0906 33 1 3.7705 -5.7805 -2.2430 34 1 5.3893 -5.4276 -1.4941 35 1 7.2711 -6.6657 -3.5640 36 1 3.6440 -7.9154 0.7648 37 1 2.5149 -7.5702 -0.6180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500902624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:48 Heat of formation + Delta-G solvation = -38.307154 kcal Electronic energy + Delta-G solvation = -21625.583495 eV Core-core repulsion = 18177.733546 eV Total energy + Delta-G solvation = -3447.849949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.48493 -41.05662 -39.89600 -36.51753 -35.34267 -34.76104 -34.02335 -31.87232 -30.03362 -28.11877 -27.73709 -26.74879 -24.68608 -23.43630 -21.37730 -21.34951 -20.89530 -19.37886 -18.73152 -17.60399 -17.20686 -17.16545 -17.01428 -16.28558 -16.18848 -15.75694 -15.70334 -15.21361 -14.74824 -14.53986 -14.26514 -14.21638 -13.96369 -13.86724 -13.43173 -13.39156 -12.97204 -12.82719 -12.55638 -12.43171 -12.22444 -11.78049 -11.46123 -11.06409 -10.96754 -10.73240 -10.59439 -10.14554 -9.58503 -8.93888 -7.91668 -5.24189 0.36997 1.10263 1.45731 1.47430 1.56061 1.97156 2.14374 2.31263 2.46363 3.04942 3.27775 3.33969 3.55141 3.64198 3.69748 3.88919 4.08562 4.35661 4.37616 4.52877 4.68460 4.74432 4.77883 4.82846 4.94899 4.96339 5.07355 5.08550 5.16641 5.26687 5.32502 5.48963 5.54002 5.91896 6.01888 6.43123 6.82603 6.91414 7.14599 7.58803 8.52111 9.25074 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029100 B = 0.003652 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.954968 B = 7665.916456 C = 8181.649601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.166 4.166 3 C -0.033 4.033 4 O -0.174 6.174 5 C 0.044 3.956 6 C -0.269 4.269 7 C 0.587 3.413 8 O -0.575 6.575 9 N -0.712 5.712 10 C 0.120 3.880 11 C 0.099 3.901 12 O -0.539 6.539 13 C 0.143 3.857 14 N -0.635 5.635 15 C -0.236 4.236 16 H 0.082 0.918 17 C -0.064 4.064 18 N -0.951 5.951 19 Si 0.979 3.021 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.270 1.270 23 C 0.129 3.871 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.053 0.947 27 H 0.245 0.755 28 H 0.244 0.756 29 H 0.409 0.591 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.383 0.617 33 H 0.025 0.975 34 H 0.052 0.948 35 H 0.249 0.751 36 H 0.058 0.942 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.565 17.251 7.333 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.167 4.167 3 C -0.098 4.098 4 O -0.068 6.068 5 C -0.027 4.027 6 C -0.273 4.273 7 C 0.376 3.624 8 O -0.456 6.456 9 N -0.365 5.365 10 C -0.005 4.005 11 C 0.057 3.943 12 O -0.345 6.345 13 C 0.017 3.983 14 N -0.362 5.362 15 C -0.364 4.364 16 H 0.099 0.901 17 C -0.257 4.257 18 N -0.600 5.600 19 Si 0.807 3.193 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.195 1.195 23 C 0.003 3.997 24 H 0.088 0.912 25 H 0.108 0.892 26 H 0.072 0.928 27 H 0.261 0.739 28 H 0.260 0.740 29 H 0.245 0.755 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.232 0.768 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.929 16.421 7.280 19.635 hybrid contribution 0.905 -0.431 -0.801 1.283 sum -7.025 15.990 6.478 18.628 Atomic orbital electron populations 1.20179 0.88271 1.02964 1.02496 1.21700 0.97881 0.90924 1.06238 1.24361 0.78812 1.00694 1.05912 1.83832 1.30132 1.22339 1.70497 1.25041 0.99028 0.81178 0.97416 1.21430 0.95087 0.93288 1.17529 1.17565 0.85011 0.84637 0.75158 1.90736 1.18880 1.84000 1.51979 1.45626 1.09980 1.05627 1.75228 1.21738 0.96280 0.79416 1.03048 1.23124 0.87927 0.95141 0.88140 1.86586 1.65346 1.30866 1.51718 1.22848 0.97333 0.85431 0.92644 1.46037 1.32546 1.08081 1.49498 1.19385 1.07010 0.90606 1.19376 0.90066 1.25579 1.01156 0.99125 0.99877 1.69963 1.36039 1.19794 1.34217 0.85074 0.77871 0.78209 0.78143 1.21357 1.21813 1.19516 1.22800 0.91634 0.91796 0.93456 0.91199 0.89244 0.92838 0.73914 0.73984 0.75477 0.90117 0.90892 0.76788 0.95701 0.92941 0.94209 0.92346 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.61 10.00 71.23 0.71 -0.89 16 2 C -0.17 -3.44 6.37 -18.48 -0.12 -3.55 16 3 C -0.03 -0.48 11.96 66.89 0.80 0.32 16 4 O -0.17 -2.84 10.52 4.46 0.05 -2.79 16 5 C 0.04 0.72 11.61 67.39 0.78 1.50 16 6 C -0.27 -6.18 6.31 -18.99 -0.12 -6.30 16 7 C 0.59 16.60 7.81 86.65 0.68 17.28 16 8 O -0.58 -20.45 15.41 -4.08 -0.06 -20.51 16 9 N -0.71 -17.68 5.33 -466.42 -2.49 -20.16 16 10 C 0.12 3.51 5.28 86.38 0.46 3.96 16 11 C 0.10 3.49 1.52 -10.14 -0.02 3.47 16 12 O -0.54 -18.27 13.51 -148.98 -2.01 -20.28 16 13 C 0.14 6.49 6.92 86.48 0.60 7.09 16 14 N -0.64 -32.69 3.70 -720.26 -2.66 -35.36 16 15 C -0.24 -13.40 10.70 84.03 0.90 -12.50 16 16 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 17 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 18 N -0.95 -56.59 11.38 21.65 0.25 -56.34 16 19 Si 0.98 45.85 29.55 68.60 2.03 47.88 16 20 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 23 C 0.13 5.17 8.34 86.48 0.72 5.89 16 24 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.05 1.36 6.92 -2.38 -0.02 1.34 16 27 H 0.24 1.38 8.06 -2.91 -0.02 1.35 16 28 H 0.24 2.07 7.47 -2.92 -0.02 2.05 16 29 H 0.41 7.85 6.28 -92.71 -0.58 7.27 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.28 16 31 H 0.07 2.29 8.04 -2.39 -0.02 2.27 16 32 H 0.38 9.04 7.61 -74.06 -0.56 8.48 16 33 H 0.03 1.17 8.03 -2.39 -0.02 1.16 16 34 H 0.05 2.63 7.15 -2.39 -0.02 2.62 16 35 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 36 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.07 2.58 8.10 -2.39 -0.02 2.56 16 Total: -1.00 -78.07 319.42 0.93 -77.15 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -0.03 Total: 17.34 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 5.86 Total: 13.07 kcal Atomic # 7 Polarization: -106.96 SS G_CDS: -4.90 Total: -111.86 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -2.03 Total: -43.58 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -78.07 0.93 -77.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500902624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.842 kcal (2) G-P(sol) polarization free energy of solvation -78.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds