Wall clock time and date at job start Tue Mar 31 2020 02:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31787 * 119.09827 * 2 1 4 4 C 1.32485 * 120.97014 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.41252 * 180.02562 * 4 3 2 6 6 C 1.38233 * 119.17384 * 0.02562 * 4 3 2 7 7 C 1.50702 * 120.82127 * 180.02562 * 6 4 3 8 8 C 1.50704 * 109.46861 * 90.00112 * 7 6 4 9 9 O 1.20825 * 120.00077 * 359.97438 * 8 7 6 10 10 O 1.34225 * 119.99598 * 179.97438 * 8 7 6 11 11 C 1.45206 * 117.00211 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46590 * 30.00194 * 11 10 8 13 13 C 1.52997 * 109.47226 * 270.00418 * 11 10 8 14 14 C 1.50697 * 109.47178 * 149.99899 * 11 10 8 15 15 H 1.07999 * 120.00055 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99687 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00458 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99926 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.46872 * 59.99743 * 18 16 14 20 20 H 1.48503 * 109.47008 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.46914 * 299.99916 * 18 16 14 22 22 C 1.39377 * 118.35197 * 0.26957 * 6 4 3 23 23 O 1.35514 * 120.51371 * 179.70795 * 22 6 4 24 24 N 1.31772 * 119.09331 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47176 * 89.99936 * 1 2 3 26 26 H 1.08998 * 109.47051 * 210.00199 * 1 2 3 27 27 H 1.09006 * 109.46901 * 330.00044 * 1 2 3 28 28 H 1.09000 * 109.47223 * 269.97661 * 5 4 3 29 29 H 1.08994 * 109.47179 * 29.98395 * 5 4 3 30 30 H 1.09007 * 109.47279 * 149.97865 * 5 4 3 31 31 H 1.08995 * 109.47760 * 329.99694 * 7 6 4 32 32 H 1.09004 * 109.46842 * 209.99398 * 7 6 4 33 33 H 1.09002 * 109.47153 * 299.99431 * 13 11 10 34 34 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 35 35 H 1.09004 * 109.47261 * 59.99603 * 13 11 10 36 36 H 0.96999 * 120.00480 * 179.97438 * 17 16 14 37 37 H 0.96705 * 113.99739 * 90.00143 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1478 1.1515 0.0000 4 6 3.4720 1.1948 -0.0005 5 6 4.1920 2.5187 0.0001 6 6 4.1849 0.0105 -0.0016 7 6 5.6919 0.0164 -0.0016 8 6 6.1942 0.0171 1.4193 9 8 5.4090 0.0136 2.3376 10 8 7.5139 0.0215 1.6645 11 6 7.9257 0.0224 3.0569 12 1 7.1770 -0.4942 3.6575 13 6 8.0653 1.4652 3.5465 14 6 9.2505 -0.6835 3.1894 15 1 9.7347 -1.0917 2.3146 16 6 9.8443 -0.8083 4.4275 17 7 9.2548 -0.3108 5.4927 18 14 11.4868 -1.6827 4.5918 19 1 12.5067 -0.9780 3.7740 20 1 11.9078 -1.6818 6.0159 21 1 11.3519 -3.0828 4.1158 22 6 3.4754 -1.1892 -0.0079 23 8 4.1300 -2.3757 -0.0151 24 7 2.1477 -1.1515 0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 4.3656 2.8383 -1.0274 29 1 3.5839 3.2628 0.5144 30 1 5.1475 2.4124 0.5138 31 1 6.0518 0.9081 -0.5147 32 1 6.0587 -0.8718 -0.5162 33 1 8.8140 1.9819 2.9459 34 1 8.3740 1.4659 4.5919 35 1 7.1070 1.9758 3.4506 36 1 9.6724 -0.3989 6.3638 37 1 4.3206 -2.7251 0.8662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515068274.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:16 Heat of formation + Delta-G solvation = -91.501987 kcal Electronic energy + Delta-G solvation = -21919.751525 eV Core-core repulsion = 18469.594876 eV Total energy + Delta-G solvation = -3450.156650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.47284 -39.56039 -37.77240 -36.05183 -34.90220 -33.34082 -32.85244 -30.76687 -29.58327 -29.11174 -26.54162 -25.37285 -23.25586 -22.41818 -21.33917 -19.68089 -18.82444 -18.12388 -17.12119 -16.74423 -16.01086 -15.50227 -15.29749 -14.89282 -14.68025 -14.26736 -14.05065 -13.49176 -13.36522 -12.98853 -12.83922 -12.57303 -12.48090 -12.24676 -12.06408 -11.95027 -11.74928 -11.26971 -11.11344 -10.91782 -10.71467 -10.46193 -10.34100 -10.33755 -9.87534 -9.63492 -9.35186 -9.12462 -8.98957 -8.55135 -6.24126 -4.31769 0.71260 0.91978 2.83074 3.16686 3.22702 3.26528 3.28512 3.47470 3.74598 3.81801 4.21923 4.29309 4.56727 4.71040 4.96773 5.08883 5.11130 5.34735 5.38370 5.41607 5.48538 5.52539 5.59169 5.72800 5.81563 5.89022 6.26556 6.55343 6.80182 6.82659 6.87788 7.06796 7.28973 7.52529 7.64478 7.85244 8.01046 8.06406 8.52459 8.79756 9.34105 10.83121 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030695 B = 0.003992 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.969008 B = 7012.101805 C = 7336.210666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.339 3.661 3 N -0.526 5.526 4 C 0.207 3.793 5 C -0.112 4.112 6 C -0.193 4.193 7 C -0.070 4.070 8 C 0.454 3.546 9 O -0.520 6.520 10 O -0.353 6.353 11 C 0.216 3.784 12 H 0.046 0.954 13 C -0.155 4.155 14 C -0.524 4.524 15 H 0.069 0.931 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.913 3.087 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.381 3.619 23 O -0.476 6.476 24 N -0.543 5.543 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.038 0.962 34 H 0.100 0.900 35 H 0.015 0.985 36 H 0.267 0.733 37 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.541 2.576 -11.303 16.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.072 3.928 3 N -0.243 5.243 4 C 0.062 3.938 5 C -0.169 4.169 6 C -0.198 4.198 7 C -0.109 4.109 8 C 0.297 3.703 9 O -0.410 6.410 10 O -0.269 6.269 11 C 0.164 3.836 12 H 0.064 0.936 13 C -0.213 4.213 14 C -0.562 4.562 15 H 0.087 0.913 16 C -0.139 4.139 17 N -0.527 5.527 18 Si 0.739 3.261 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C 0.194 3.806 23 O -0.285 6.285 24 N -0.269 5.269 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.057 0.943 34 H 0.118 0.882 35 H 0.034 0.966 36 H 0.077 0.923 37 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -12.635 2.595 -11.360 17.188 hybrid contribution 1.818 -0.683 0.827 2.111 sum -10.817 1.912 -10.533 15.218 Atomic orbital electron populations 1.20569 0.85397 1.04315 1.03841 1.23005 0.97882 0.82235 0.89676 1.68106 1.09184 1.30206 1.16778 1.21470 0.89065 0.95296 0.87950 1.20863 1.00319 0.91982 1.03706 1.21003 0.97156 0.94004 1.07662 1.20098 0.89743 1.07177 0.93871 1.23105 0.82845 0.73314 0.91059 1.90623 1.57335 1.46244 1.46839 1.86494 1.22290 1.81435 1.36700 1.20660 0.95801 0.94795 0.72351 0.93627 1.22167 0.97742 0.96532 1.04829 1.20985 1.03931 1.36933 0.94331 0.91277 1.24889 0.98372 0.95505 0.95141 1.69881 1.39049 1.44653 0.99075 0.86320 0.82599 0.80000 0.77149 1.19882 1.21012 1.19940 1.19165 0.86620 0.85424 0.89430 1.84604 1.74648 1.34278 1.34924 1.67793 1.09507 1.31862 1.17743 0.89574 0.89548 0.89406 0.89203 0.89390 0.89845 0.86609 0.86182 0.94323 0.88202 0.96570 0.92277 0.72606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.32 36.00 0.37 -0.41 16 2 C 0.34 4.72 7.64 -157.22 -1.20 3.52 16 3 N -0.53 -7.59 10.27 -7.05 -0.07 -7.67 16 4 C 0.21 2.94 6.82 -82.31 -0.56 2.38 16 5 C -0.11 -1.24 9.45 36.01 0.34 -0.90 16 6 C -0.19 -2.85 4.42 -104.20 -0.46 -3.31 16 7 C -0.07 -0.99 5.11 -29.03 -0.15 -1.14 16 8 C 0.45 8.80 7.61 36.01 0.27 9.08 16 9 O -0.52 -11.59 15.25 -18.75 -0.29 -11.88 16 10 O -0.35 -7.95 9.86 -39.25 -0.39 -8.34 16 11 C 0.22 5.62 2.56 -27.89 -0.07 5.55 16 12 H 0.05 1.31 7.16 -51.93 -0.37 0.94 16 13 C -0.15 -3.81 9.33 37.16 0.35 -3.47 16 14 C -0.52 -14.34 8.90 -34.44 -0.31 -14.65 16 15 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 17 N -0.89 -24.81 11.32 55.43 0.63 -24.19 16 18 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 C 0.38 5.83 7.81 -16.70 -0.13 5.70 16 23 O -0.48 -6.54 12.75 -18.23 -0.23 -6.77 16 24 N -0.54 -8.33 10.36 -10.78 -0.11 -8.45 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 0.99 6.54 -51.92 -0.34 0.65 16 31 H 0.12 1.31 6.82 -51.93 -0.35 0.95 16 32 H 0.12 1.53 7.62 -51.93 -0.40 1.13 16 33 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.10 2.65 6.07 -51.93 -0.32 2.33 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.41 4.51 9.06 45.56 0.41 4.92 16 LS Contribution 322.32 15.07 4.86 4.86 Total: -1.00 -32.84 322.32 -6.14 -38.97 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -3.87 Total: 3.84 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.64 Total: 3.97 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.44 Total: -40.30 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.91 Total: -26.99 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.84 -6.14 -38.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515068274.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.527 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds