Wall clock time and date at job start Tue Mar 31 2020 02:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31787 * 119.09827 * 2 1 4 4 C 1.32485 * 120.97014 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.41252 * 180.02562 * 4 3 2 6 6 C 1.38233 * 119.17384 * 0.02562 * 4 3 2 7 7 C 1.50702 * 120.82127 * 180.02562 * 6 4 3 8 8 C 1.50704 * 109.46861 * 90.00112 * 7 6 4 9 9 O 1.20825 * 120.00077 * 359.97438 * 8 7 6 10 10 O 1.34225 * 119.99598 * 179.97438 * 8 7 6 11 11 C 1.45206 * 117.00211 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46590 * 30.00194 * 11 10 8 13 13 C 1.52997 * 109.47226 * 270.00418 * 11 10 8 14 14 C 1.50697 * 109.47178 * 149.99899 * 11 10 8 15 15 H 1.07999 * 120.00055 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99687 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00458 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99926 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.46872 * 59.99743 * 18 16 14 20 20 H 1.48503 * 109.47008 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.46914 * 299.99916 * 18 16 14 22 22 C 1.39377 * 118.35197 * 0.26957 * 6 4 3 23 23 O 1.35514 * 120.51371 * 179.70795 * 22 6 4 24 24 N 1.31772 * 119.09331 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47176 * 89.99936 * 1 2 3 26 26 H 1.08998 * 109.47051 * 210.00199 * 1 2 3 27 27 H 1.09006 * 109.46901 * 330.00044 * 1 2 3 28 28 H 1.09000 * 109.47223 * 269.97661 * 5 4 3 29 29 H 1.08994 * 109.47179 * 29.98395 * 5 4 3 30 30 H 1.09007 * 109.47279 * 149.97865 * 5 4 3 31 31 H 1.08995 * 109.47760 * 329.99694 * 7 6 4 32 32 H 1.09004 * 109.46842 * 209.99398 * 7 6 4 33 33 H 1.09002 * 109.47153 * 299.99431 * 13 11 10 34 34 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 35 35 H 1.09004 * 109.47261 * 59.99603 * 13 11 10 36 36 H 0.96999 * 120.00480 * 179.97438 * 17 16 14 37 37 H 0.96705 * 113.99739 * 90.00143 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1478 1.1515 0.0000 4 6 3.4720 1.1948 -0.0005 5 6 4.1920 2.5187 0.0001 6 6 4.1849 0.0105 -0.0016 7 6 5.6919 0.0164 -0.0016 8 6 6.1942 0.0171 1.4193 9 8 5.4090 0.0136 2.3376 10 8 7.5139 0.0215 1.6645 11 6 7.9257 0.0224 3.0569 12 1 7.1770 -0.4942 3.6575 13 6 8.0653 1.4652 3.5465 14 6 9.2505 -0.6835 3.1894 15 1 9.7347 -1.0917 2.3146 16 6 9.8443 -0.8083 4.4275 17 7 9.2548 -0.3108 5.4927 18 14 11.4868 -1.6827 4.5918 19 1 12.5067 -0.9780 3.7740 20 1 11.9078 -1.6818 6.0159 21 1 11.3519 -3.0828 4.1158 22 6 3.4754 -1.1892 -0.0079 23 8 4.1300 -2.3757 -0.0151 24 7 2.1477 -1.1515 0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 4.3656 2.8383 -1.0274 29 1 3.5839 3.2628 0.5144 30 1 5.1475 2.4124 0.5138 31 1 6.0518 0.9081 -0.5147 32 1 6.0587 -0.8718 -0.5162 33 1 8.8140 1.9819 2.9459 34 1 8.3740 1.4659 4.5919 35 1 7.1070 1.9758 3.4506 36 1 9.6724 -0.3989 6.3638 37 1 4.3206 -2.7251 0.8662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515068274.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:15 Heat of formation + Delta-G solvation = -115.368212 kcal Electronic energy + Delta-G solvation = -21920.786442 eV Core-core repulsion = 18469.594876 eV Total energy + Delta-G solvation = -3451.191567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.57477 -41.19442 -38.84752 -37.74592 -36.05647 -35.33648 -33.96676 -32.06812 -31.26120 -30.06256 -27.70502 -27.41364 -24.42541 -23.78853 -22.76037 -21.34902 -19.90207 -19.22451 -18.84425 -18.57127 -17.34630 -17.01250 -16.92486 -16.40723 -15.89273 -15.52045 -15.17395 -14.83404 -14.39059 -14.27063 -14.23882 -13.88835 -13.68049 -13.40953 -13.29531 -13.11789 -13.05027 -12.96484 -12.82776 -12.79557 -12.38883 -12.18199 -11.79795 -11.60435 -11.48383 -11.40519 -11.00677 -10.59942 -10.44391 -10.22890 -8.28982 -6.45947 -0.38253 -0.16148 1.27541 1.42895 1.46024 1.54090 1.95067 2.19063 2.40684 2.60883 2.86037 3.02114 3.20005 3.43682 3.64996 3.89609 4.07554 4.18047 4.45935 4.48154 4.54252 4.60717 4.63300 4.70455 4.77284 4.79609 4.84223 4.87398 5.08932 5.16346 5.34139 5.48675 5.62976 5.80216 5.91539 6.07423 6.27365 6.59173 6.92995 6.94321 7.26142 8.78135 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030695 B = 0.003992 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.969008 B = 7012.101805 C = 7336.210666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.330 3.670 3 N -0.537 5.537 4 C 0.201 3.799 5 C -0.110 4.110 6 C -0.210 4.210 7 C -0.053 4.053 8 C 0.454 3.546 9 O -0.552 6.552 10 O -0.358 6.358 11 C 0.219 3.781 12 H 0.007 0.993 13 C -0.143 4.143 14 C -0.549 4.549 15 H 0.070 0.930 16 C 0.017 3.983 17 N -0.917 5.917 18 Si 0.981 3.019 19 H -0.263 1.263 20 H -0.279 1.279 21 H -0.268 1.268 22 C 0.368 3.632 23 O -0.479 6.479 24 N -0.564 5.564 25 H 0.106 0.894 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.122 0.878 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.150 0.850 32 H 0.137 0.863 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.024 0.976 36 H 0.270 0.730 37 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.247 2.901 -12.663 17.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.064 3.936 3 N -0.254 5.254 4 C 0.056 3.944 5 C -0.167 4.167 6 C -0.216 4.216 7 C -0.091 4.091 8 C 0.299 3.701 9 O -0.444 6.444 10 O -0.274 6.274 11 C 0.166 3.834 12 H 0.025 0.975 13 C -0.201 4.201 14 C -0.587 4.587 15 H 0.088 0.912 16 C -0.182 4.182 17 N -0.555 5.555 18 Si 0.804 3.196 19 H -0.188 1.188 20 H -0.205 1.205 21 H -0.193 1.193 22 C 0.182 3.818 23 O -0.289 6.289 24 N -0.290 5.290 25 H 0.125 0.875 26 H 0.111 0.889 27 H 0.118 0.882 28 H 0.140 0.860 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.168 0.832 32 H 0.155 0.845 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -12.356 2.920 -12.736 17.983 hybrid contribution 1.597 -0.780 1.236 2.165 sum -10.758 2.140 -11.500 15.892 Atomic orbital electron populations 1.20734 0.82548 1.05203 1.05376 1.23877 0.99668 0.81838 0.88263 1.68226 1.09348 1.30364 1.17489 1.22007 0.89333 0.96308 0.86735 1.20968 0.99521 0.90571 1.05656 1.21072 0.97308 0.94160 1.09063 1.20148 0.89378 1.09587 0.90036 1.24114 0.81332 0.71642 0.93014 1.90611 1.57648 1.47577 1.48532 1.86479 1.24424 1.82097 1.34430 1.20326 0.94433 0.94886 0.73752 0.97523 1.21986 0.98423 0.96079 1.03563 1.21291 1.04697 1.37858 0.94830 0.91228 1.25804 1.01980 0.95893 0.94564 1.70007 1.40592 1.45328 0.99568 0.85263 0.78049 0.78915 0.77387 1.18771 1.20456 1.19312 1.19450 0.87044 0.85982 0.89364 1.84567 1.74560 1.34036 1.35784 1.67880 1.09636 1.32644 1.18867 0.87529 0.88876 0.88229 0.86031 0.88991 0.90552 0.83219 0.84476 0.93277 0.90312 0.95647 0.92041 0.71558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.32 71.23 0.73 -0.64 16 2 C 0.33 8.85 7.64 138.76 1.06 9.91 16 3 N -0.54 -14.84 10.27 -176.23 -1.81 -16.65 16 4 C 0.20 5.43 6.82 42.46 0.29 5.72 16 5 C -0.11 -2.22 9.45 71.24 0.67 -1.55 16 6 C -0.21 -5.99 4.42 -19.59 -0.09 -6.08 16 7 C -0.05 -1.42 5.11 29.10 0.15 -1.27 16 8 C 0.45 17.46 7.61 71.24 0.54 18.01 16 9 O -0.55 -25.00 15.25 21.97 0.34 -24.67 16 10 O -0.36 -16.09 9.86 -51.37 -0.51 -16.60 16 11 C 0.22 11.61 2.56 29.85 0.08 11.68 16 12 H 0.01 0.42 7.16 -2.39 -0.02 0.40 16 13 C -0.14 -7.10 9.33 71.98 0.67 -6.43 16 14 C -0.55 -30.27 8.90 25.60 0.23 -30.04 16 15 H 0.07 3.73 7.81 -2.91 -0.02 3.70 16 16 C 0.02 0.94 5.30 84.66 0.45 1.39 16 17 N -0.92 -51.79 11.32 21.45 0.24 -51.55 16 18 Si 0.98 41.89 29.54 68.60 2.03 43.92 16 19 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 20 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 C 0.37 11.11 7.81 84.82 0.66 11.77 16 23 O -0.48 -13.03 12.75 -88.16 -1.12 -14.15 16 24 N -0.56 -17.00 10.36 -300.69 -3.12 -20.12 16 25 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.08 1.66 6.54 -2.38 -0.02 1.65 16 31 H 0.15 2.94 6.82 -2.39 -0.02 2.93 16 32 H 0.14 3.21 7.62 -2.39 -0.02 3.19 16 33 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.08 4.26 6.07 -2.39 -0.01 4.24 16 35 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 37 H 0.42 9.34 9.06 -74.05 -0.67 8.66 16 Total: -1.00 -71.24 322.32 1.94 -69.31 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.44 Total: 18.04 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 5.45 Total: 12.47 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -4.68 Total: -88.32 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -1.30 Total: -55.42 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -71.24 1.94 -69.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515068274.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.063 kcal (2) G-P(sol) polarization free energy of solvation -71.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds