Wall clock time and date at job start Tue Mar 31 2020 02:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30435 * 125.99445 * 2 1 4 4 N 1.39925 * 108.91947 * 180.02562 * 3 2 1 5 5 C 1.46501 * 125.74077 * 179.97438 * 4 3 2 6 6 C 1.34228 * 108.51226 * 0.22960 * 4 3 2 7 7 C 1.38124 * 107.40970 * 359.63714 * 6 4 3 8 8 C 1.47281 * 126.42987 * 180.16932 * 7 6 4 9 9 O 1.21524 * 120.00352 * 175.22746 * 8 7 6 10 10 O 1.34756 * 119.99795 * 355.23576 * 8 7 6 11 11 C 1.45201 * 116.99897 * 183.19521 * 10 8 7 12 12 C 1.53001 * 109.46873 * 183.00551 * 11 10 8 13 13 C 1.50693 * 113.00164 * 290.54098 * 12 11 10 14 14 H 1.08002 * 120.00089 * 116.73944 * 13 12 11 15 15 C 1.37878 * 120.00356 * 296.74300 * 13 12 11 16 16 N 1.31514 * 119.99925 * 353.66020 * 15 13 12 17 17 Si 1.86801 * 120.00078 * 173.66146 * 15 13 12 18 18 H 1.48493 * 109.47178 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46762 * 120.00190 * 17 15 13 20 20 H 1.48497 * 109.47185 * 239.99759 * 17 15 13 21 21 C 1.54040 * 113.81251 * 158.55806 * 12 11 10 22 22 O 1.44176 * 85.51600 * 223.19436 * 21 12 11 23 23 C 1.44181 * 93.34067 * 24.19248 * 22 21 12 24 24 H 1.08998 * 109.47311 * 89.97045 * 1 2 3 25 25 H 1.08998 * 109.46847 * 209.97562 * 1 2 3 26 26 H 1.09006 * 109.46550 * 329.97117 * 1 2 3 27 27 H 1.09006 * 109.46963 * 90.03094 * 5 4 3 28 28 H 1.09002 * 109.46637 * 210.01947 * 5 4 3 29 29 H 1.08990 * 109.47418 * 330.02194 * 5 4 3 30 30 H 1.07996 * 126.29283 * 179.77661 * 6 4 3 31 31 H 1.09000 * 109.47157 * 303.00494 * 11 10 8 32 32 H 1.08996 * 109.47080 * 63.00945 * 11 10 8 33 33 H 0.96998 * 120.00148 * 185.02038 * 16 15 13 34 34 H 1.09001 * 113.86491 * 337.34033 * 21 12 11 35 35 H 1.09000 * 113.86577 * 109.05052 * 21 12 11 36 36 H 1.08999 * 113.86671 * 221.65403 * 23 22 21 37 37 H 1.09008 * 113.97694 * 89.96633 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0553 0.0000 4 7 3.6112 0.6445 -0.0006 5 6 4.7784 1.5299 -0.0013 6 6 3.6449 -0.6974 -0.0061 7 6 2.3377 -1.1436 -0.0006 8 6 1.8928 -2.5476 -0.0002 9 8 0.7099 -2.8102 0.0925 10 8 2.7975 -3.5411 -0.1024 11 6 2.2828 -4.8973 -0.1672 12 6 3.4509 -5.8848 -0.2044 13 6 4.2232 -5.8349 -1.4974 14 1 5.2607 -5.5349 -1.4955 15 6 3.6054 -6.1722 -2.6830 16 7 2.3825 -6.6560 -2.6728 17 14 4.5053 -5.9419 -4.3037 18 1 5.8577 -5.3863 -4.0443 19 1 4.6323 -7.2527 -4.9898 20 1 3.7412 -5.0042 -5.1652 21 6 3.0752 -7.3097 0.2443 22 8 4.3162 -7.2841 0.9776 23 6 4.3397 -5.8445 1.0530 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5143 27 1 5.0687 1.7492 1.0262 28 1 5.6053 1.0404 -0.5158 29 1 4.5297 2.4585 -0.5148 30 1 4.5311 -1.3146 -0.0113 31 1 1.6678 -5.0948 0.7108 32 1 1.6794 -5.0142 -1.0673 33 1 1.9748 -6.9612 -3.4983 34 1 2.1893 -7.3533 0.8779 35 1 3.0574 -8.0372 -0.5672 36 1 5.3248 -5.4100 0.8830 37 1 3.8406 -5.4388 1.9331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515971830.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:09 Heat of formation + Delta-G solvation = -21.138009 kcal Electronic energy + Delta-G solvation = -22112.940974 eV Core-core repulsion = 18665.835535 eV Total energy + Delta-G solvation = -3447.105438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.34567 -39.54754 -38.76269 -35.56611 -33.96313 -32.95000 -30.84449 -29.76199 -29.36428 -26.23378 -25.40559 -25.14718 -24.18055 -22.39945 -20.51453 -19.47592 -18.97633 -17.31667 -16.57214 -16.13517 -15.89012 -15.44553 -15.23737 -14.78670 -14.39536 -14.34917 -14.19794 -13.92858 -13.54103 -13.22906 -12.67381 -12.58839 -12.23493 -12.13678 -11.93936 -11.88507 -11.60492 -11.01677 -10.87304 -10.77348 -10.45447 -10.04847 -9.91783 -9.54048 -9.35092 -9.31138 -9.05620 -8.73447 -8.62247 -8.33279 -6.17880 -4.22560 1.54531 2.18224 2.28717 3.23204 3.31947 3.34834 3.50642 3.68674 4.30892 4.31890 4.75576 4.87547 4.89718 4.91546 5.16055 5.16861 5.24484 5.53739 5.63814 5.76840 5.92105 6.05418 6.11103 6.13207 6.19261 6.34358 6.41387 6.54529 6.63402 6.77724 7.01141 7.17186 7.29407 7.39761 7.42531 7.58046 7.78110 8.18836 8.59231 8.75089 9.41315 10.89247 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016330 B = 0.005349 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.185780 B = 5233.796162 C = 5591.747976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.134 3.866 3 N -0.309 5.309 4 N -0.368 5.368 5 C 0.099 3.901 6 C 0.129 3.871 7 C -0.272 4.272 8 C 0.534 3.466 9 O -0.525 6.525 10 O -0.340 6.340 11 C 0.083 3.917 12 C 0.033 3.967 13 C -0.488 4.488 14 H 0.066 0.934 15 C 0.066 3.934 16 N -0.888 5.888 17 Si 0.898 3.102 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.050 3.950 22 O -0.390 6.390 23 C 0.032 3.968 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.194 0.806 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.265 0.735 34 H 0.048 0.952 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.246 13.139 4.843 14.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 N -0.131 5.131 4 N -0.145 5.145 5 C -0.042 4.042 6 C -0.022 4.022 7 C -0.284 4.284 8 C 0.379 3.621 9 O -0.416 6.416 10 O -0.255 6.255 11 C 0.010 3.990 12 C 0.033 3.967 13 C -0.526 4.526 14 H 0.085 0.915 15 C -0.137 4.137 16 N -0.525 5.525 17 Si 0.725 3.275 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.027 4.027 22 O -0.309 6.309 23 C -0.045 4.045 24 H 0.098 0.902 25 H 0.116 0.884 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.211 0.789 31 H 0.056 0.944 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.110 14.183 4.833 15.131 hybrid contribution 0.292 -0.748 -1.026 1.303 sum 2.402 13.435 3.807 14.169 Atomic orbital electron populations 1.20382 0.85637 1.04105 1.03656 1.22473 0.97253 0.88547 0.95020 1.77134 0.86055 1.22493 1.27408 1.48279 1.06073 1.04971 1.55216 1.21973 0.83899 0.94607 1.03761 1.23360 0.99692 0.84534 0.94654 1.19525 0.92475 0.91954 1.24495 1.19962 0.84198 0.85202 0.72787 1.90738 1.18254 1.84856 1.47788 1.86510 1.39118 1.17440 1.82428 1.23508 0.98514 0.75810 1.01214 1.21092 0.91245 0.89942 0.94454 1.20647 0.97041 1.45879 0.89027 0.91546 1.24980 0.94784 0.94640 0.99274 1.69863 1.13560 1.40958 1.28151 0.86433 0.79819 0.77948 0.83268 1.19595 1.20899 1.20906 1.23919 0.85095 1.00518 0.93139 1.89485 1.40848 1.22471 1.78103 1.23988 1.00787 0.82239 0.97514 0.90156 0.88415 0.91068 0.90312 0.88889 0.89039 0.78867 0.94383 0.89153 0.92480 0.93387 0.88514 0.90508 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 9.97 36.01 0.36 -0.71 16 2 C 0.13 2.12 7.27 -82.00 -0.60 1.53 16 3 N -0.31 -4.61 12.50 33.91 0.42 -4.19 16 4 N -0.37 -4.58 3.98 -67.58 -0.27 -4.85 16 5 C 0.10 0.69 11.44 59.85 0.68 1.38 16 6 C 0.13 1.77 11.34 -16.55 -0.19 1.58 16 7 C -0.27 -4.62 6.12 -105.08 -0.64 -5.27 16 8 C 0.53 10.81 7.95 34.41 0.27 11.09 16 9 O -0.53 -11.53 14.64 -19.29 -0.28 -11.81 16 10 O -0.34 -7.33 9.86 -40.64 -0.40 -7.73 16 11 C 0.08 1.94 4.77 37.16 0.18 2.12 16 12 C 0.03 0.80 0.56 -154.58 -0.09 0.71 16 13 C -0.49 -12.72 8.25 -34.44 -0.28 -13.01 16 14 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 15 C 0.07 1.73 5.21 -17.82 -0.09 1.64 16 16 N -0.89 -23.93 11.27 55.43 0.62 -23.30 16 17 Si 0.90 20.61 29.55 -169.99 -5.02 15.59 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.05 1.18 7.94 37.61 0.30 1.48 16 22 O -0.39 -9.21 12.40 -35.23 -0.44 -9.65 16 23 C 0.03 0.68 8.21 37.61 0.31 0.99 16 24 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.10 1.44 6.47 -51.93 -0.34 1.11 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.19 2.16 8.06 -52.49 -0.42 1.73 16 31 H 0.04 0.85 7.89 -51.93 -0.41 0.44 16 32 H 0.09 2.37 6.76 -51.93 -0.35 2.02 16 33 H 0.27 6.86 8.32 -40.82 -0.34 6.53 16 34 H 0.05 1.03 7.99 -51.93 -0.41 0.61 16 35 H 0.10 2.43 7.59 -51.93 -0.39 2.03 16 36 H 0.08 1.56 8.08 -51.93 -0.42 1.14 16 37 H 0.05 1.04 8.10 -51.92 -0.42 0.62 16 LS Contribution 322.29 15.07 4.86 4.86 Total: -1.00 -31.67 322.29 -5.12 -36.79 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.83 Total: 0.78 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 0.21 Total: 3.51 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.78 Total: -32.33 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -1.12 Total: -29.19 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.67 -5.12 -36.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515971830.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.651 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds