Wall clock time and date at job start Tue Mar 31 2020 02:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30435 * 125.99445 * 2 1 4 4 N 1.39925 * 108.91947 * 180.02562 * 3 2 1 5 5 C 1.46501 * 125.74077 * 179.97438 * 4 3 2 6 6 C 1.34228 * 108.51226 * 0.22960 * 4 3 2 7 7 C 1.38124 * 107.40970 * 359.63714 * 6 4 3 8 8 C 1.47281 * 126.42987 * 180.16932 * 7 6 4 9 9 O 1.21524 * 120.00352 * 175.22746 * 8 7 6 10 10 O 1.34756 * 119.99795 * 355.23576 * 8 7 6 11 11 C 1.45201 * 116.99897 * 183.19521 * 10 8 7 12 12 C 1.53001 * 109.46873 * 183.00551 * 11 10 8 13 13 C 1.50693 * 113.00164 * 290.54098 * 12 11 10 14 14 H 1.08002 * 120.00089 * 116.73944 * 13 12 11 15 15 C 1.37878 * 120.00356 * 296.74300 * 13 12 11 16 16 N 1.31514 * 119.99925 * 353.66020 * 15 13 12 17 17 Si 1.86801 * 120.00078 * 173.66146 * 15 13 12 18 18 H 1.48493 * 109.47178 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46762 * 120.00190 * 17 15 13 20 20 H 1.48497 * 109.47185 * 239.99759 * 17 15 13 21 21 C 1.54040 * 113.81251 * 158.55806 * 12 11 10 22 22 O 1.44176 * 85.51600 * 223.19436 * 21 12 11 23 23 C 1.44181 * 93.34067 * 24.19248 * 22 21 12 24 24 H 1.08998 * 109.47311 * 89.97045 * 1 2 3 25 25 H 1.08998 * 109.46847 * 209.97562 * 1 2 3 26 26 H 1.09006 * 109.46550 * 329.97117 * 1 2 3 27 27 H 1.09006 * 109.46963 * 90.03094 * 5 4 3 28 28 H 1.09002 * 109.46637 * 210.01947 * 5 4 3 29 29 H 1.08990 * 109.47418 * 330.02194 * 5 4 3 30 30 H 1.07996 * 126.29283 * 179.77661 * 6 4 3 31 31 H 1.09000 * 109.47157 * 303.00494 * 11 10 8 32 32 H 1.08996 * 109.47080 * 63.00945 * 11 10 8 33 33 H 0.96998 * 120.00148 * 185.02038 * 16 15 13 34 34 H 1.09001 * 113.86491 * 337.34033 * 21 12 11 35 35 H 1.09000 * 113.86577 * 109.05052 * 21 12 11 36 36 H 1.08999 * 113.86671 * 221.65403 * 23 22 21 37 37 H 1.09008 * 113.97694 * 89.96633 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0553 0.0000 4 7 3.6112 0.6445 -0.0006 5 6 4.7784 1.5299 -0.0013 6 6 3.6449 -0.6974 -0.0061 7 6 2.3377 -1.1436 -0.0006 8 6 1.8928 -2.5476 -0.0002 9 8 0.7099 -2.8102 0.0925 10 8 2.7975 -3.5411 -0.1024 11 6 2.2828 -4.8973 -0.1672 12 6 3.4509 -5.8848 -0.2044 13 6 4.2232 -5.8349 -1.4974 14 1 5.2607 -5.5349 -1.4955 15 6 3.6054 -6.1722 -2.6830 16 7 2.3825 -6.6560 -2.6728 17 14 4.5053 -5.9419 -4.3037 18 1 5.8577 -5.3863 -4.0443 19 1 4.6323 -7.2527 -4.9898 20 1 3.7412 -5.0042 -5.1652 21 6 3.0752 -7.3097 0.2443 22 8 4.3162 -7.2841 0.9776 23 6 4.3397 -5.8445 1.0530 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8898 0.5143 27 1 5.0687 1.7492 1.0262 28 1 5.6053 1.0404 -0.5158 29 1 4.5297 2.4585 -0.5148 30 1 4.5311 -1.3146 -0.0113 31 1 1.6678 -5.0948 0.7108 32 1 1.6794 -5.0142 -1.0673 33 1 1.9748 -6.9612 -3.4983 34 1 2.1893 -7.3533 0.8779 35 1 3.0574 -8.0372 -0.5672 36 1 5.3248 -5.4100 0.8830 37 1 3.8406 -5.4388 1.9331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515971830.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:09 Heat of formation + Delta-G solvation = -41.581378 kcal Electronic energy + Delta-G solvation = -22113.827465 eV Core-core repulsion = 18665.835535 eV Total energy + Delta-G solvation = -3447.991929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.47560 -41.28381 -40.42707 -37.21027 -34.97261 -34.89585 -32.21968 -31.38144 -30.35483 -27.56698 -27.15907 -26.83890 -25.85557 -23.68679 -21.78781 -20.91293 -20.61510 -18.63982 -18.34384 -17.71088 -17.30904 -16.90362 -16.72395 -16.37217 -16.16078 -16.08394 -15.69106 -15.21458 -14.56243 -14.29914 -14.12098 -13.93919 -13.73175 -13.54714 -13.30583 -13.02945 -12.99390 -12.85890 -12.59586 -12.31713 -12.03217 -11.80235 -11.69689 -11.24937 -11.14327 -10.88113 -10.65622 -10.41162 -10.20386 -9.79150 -8.16098 -6.26101 0.37096 0.94980 1.36456 1.41144 1.44704 1.54452 1.99197 2.23157 2.41322 3.02456 3.24386 3.31377 3.72554 3.98461 4.05572 4.30764 4.34926 4.38321 4.44979 4.49886 4.50507 4.53149 4.65938 4.71837 4.72096 4.82712 4.92297 4.94539 5.20769 5.25487 5.41878 5.50170 5.56231 5.76252 5.77667 5.84210 6.25430 6.46237 6.74412 6.99218 7.40073 8.90075 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016330 B = 0.005349 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.185780 B = 5233.796162 C = 5591.747976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.124 3.876 3 N -0.321 5.321 4 N -0.356 5.356 5 C 0.085 3.915 6 C 0.148 3.852 7 C -0.312 4.312 8 C 0.531 3.469 9 O -0.553 6.553 10 O -0.342 6.342 11 C 0.096 3.904 12 C 0.018 3.982 13 C -0.501 4.501 14 H 0.064 0.936 15 C 0.022 3.978 16 N -0.912 5.912 17 Si 0.952 3.048 18 H -0.262 1.262 19 H -0.282 1.282 20 H -0.286 1.286 21 C 0.054 3.946 22 O -0.404 6.404 23 C 0.043 3.957 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.121 0.879 29 H 0.100 0.900 30 H 0.222 0.778 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.264 0.736 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.075 14.913 5.180 16.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.043 4.043 3 N -0.143 5.143 4 N -0.132 5.132 5 C -0.053 4.053 6 C -0.006 4.006 7 C -0.325 4.325 8 C 0.378 3.622 9 O -0.446 6.446 10 O -0.257 6.257 11 C 0.022 3.978 12 C 0.018 3.982 13 C -0.538 4.538 14 H 0.082 0.918 15 C -0.178 4.178 16 N -0.550 5.550 17 Si 0.778 3.222 18 H -0.186 1.186 19 H -0.207 1.207 20 H -0.212 1.212 21 C -0.024 4.024 22 O -0.323 6.323 23 C -0.034 4.034 24 H 0.102 0.898 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.118 0.882 28 H 0.139 0.861 29 H 0.119 0.881 30 H 0.238 0.762 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.964 15.999 5.181 17.278 hybrid contribution -0.211 -1.190 -1.097 1.632 sum 3.753 14.809 4.083 15.813 Atomic orbital electron populations 1.20379 0.84928 1.04314 1.03960 1.22726 0.98129 0.88382 0.95065 1.77097 0.87284 1.22253 1.27675 1.48753 1.06453 1.05233 1.52811 1.22494 0.82617 0.94452 1.05772 1.23692 0.99254 0.85293 0.92383 1.19498 0.94478 0.90250 1.28230 1.20520 0.83791 0.86061 0.71860 1.90715 1.19258 1.85318 1.49275 1.86500 1.39406 1.16925 1.82865 1.23137 0.97929 0.77017 0.99699 1.21160 0.91875 0.90194 0.94990 1.20896 0.97090 1.45627 0.90213 0.91827 1.25645 0.95474 0.94573 1.02071 1.69968 1.14659 1.41733 1.28620 0.85579 0.79129 0.77698 0.79775 1.18555 1.20743 1.21245 1.23837 0.85838 0.99731 0.92952 1.89459 1.40879 1.23928 1.78041 1.24082 1.01124 0.81097 0.97069 0.89777 0.90137 0.88825 0.88198 0.86093 0.88122 0.76196 0.93811 0.92671 0.92668 0.91504 0.90833 0.89278 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.08 9.97 71.24 0.71 -1.37 16 2 C 0.12 3.82 7.27 43.53 0.32 4.14 16 3 N -0.32 -8.97 12.50 -46.64 -0.58 -9.55 16 4 N -0.36 -7.81 3.98 -367.74 -1.46 -9.28 16 5 C 0.09 0.86 11.44 127.77 1.46 2.32 16 6 C 0.15 3.69 11.34 84.30 0.96 4.65 16 7 C -0.31 -10.36 6.12 -20.16 -0.12 -10.49 16 8 C 0.53 21.64 7.95 70.20 0.56 22.20 16 9 O -0.55 -24.93 14.64 19.76 0.29 -24.64 16 10 O -0.34 -14.65 9.86 -56.67 -0.56 -15.21 16 11 C 0.10 4.54 4.77 71.98 0.34 4.88 16 12 C 0.02 0.87 0.56 -52.23 -0.03 0.84 16 13 C -0.50 -25.95 8.25 25.60 0.21 -25.74 16 14 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 15 C 0.02 1.18 5.21 84.65 0.44 1.62 16 16 N -0.91 -50.00 11.27 21.45 0.24 -49.76 16 17 Si 0.95 42.12 29.55 68.60 2.03 44.15 16 18 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 20 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 21 C 0.05 2.50 7.94 72.28 0.57 3.08 16 22 O -0.40 -18.62 12.40 -148.98 -1.85 -20.47 16 23 C 0.04 1.75 8.21 72.27 0.59 2.34 16 24 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.08 2.44 6.47 -2.39 -0.02 2.43 16 26 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.22 4.15 8.06 -2.91 -0.02 4.13 16 31 H 0.04 1.96 7.89 -2.39 -0.02 1.94 16 32 H 0.05 2.98 6.76 -2.39 -0.02 2.96 16 33 H 0.26 13.93 8.32 -92.71 -0.77 13.16 16 34 H 0.07 2.84 7.99 -2.39 -0.02 2.82 16 35 H 0.07 3.76 7.59 -2.39 -0.02 3.74 16 36 H 0.09 3.41 8.08 -2.39 -0.02 3.39 16 37 H 0.08 2.82 8.10 -2.38 -0.02 2.80 16 Total: -1.00 -68.59 322.29 5.20 -63.40 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 1.08 Total: 12.90 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 6.01 Total: 8.47 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: -1.80 Total: -68.59 kcal Atomic # 8 Polarization: -58.21 SS G_CDS: -2.12 Total: -60.32 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -68.59 5.20 -63.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515971830.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.814 kcal (2) G-P(sol) polarization free energy of solvation -68.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds