Wall clock time and date at job start Tue Mar 31 2020 01:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00009 * 2 1 4 4 H 1.08994 * 109.47233 * 22.97929 * 3 2 1 5 5 C 1.50699 * 109.47196 * 142.98379 * 3 2 1 6 6 O 1.20831 * 119.99996 * 4.99454 * 5 3 2 7 7 O 1.34227 * 120.00186 * 185.00075 * 5 3 2 8 8 C 1.45201 * 117.00167 * 179.97438 * 7 5 3 9 9 H 1.08996 * 109.47078 * 29.99771 * 8 7 5 10 10 C 1.50701 * 109.47162 * 149.99913 * 8 7 5 11 11 H 1.07998 * 119.99906 * 359.97438 * 10 8 7 12 12 C 1.37870 * 120.00198 * 179.97438 * 10 8 7 13 13 N 1.31516 * 119.99971 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 120.00227 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47341 * 60.00063 * 14 12 10 16 16 H 1.48501 * 109.47345 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47324 * 300.00282 * 14 12 10 18 18 C 1.50695 * 109.47204 * 269.99634 * 8 7 5 19 19 C 1.34511 * 125.78955 * 144.71247 * 18 8 7 20 20 C 1.41385 * 106.84069 * 179.89238 * 19 18 8 21 21 C 1.34504 * 106.84275 * 0.37620 * 20 19 18 22 22 O 1.34303 * 108.42187 * 359.76852 * 21 20 19 23 23 C 1.52998 * 109.46865 * 262.98016 * 3 2 1 24 24 C 1.52998 * 117.50275 * 9.98365 * 23 3 2 25 25 C 1.53006 * 117.50200 * 301.31902 * 23 3 2 26 26 H 1.08999 * 109.46989 * 184.47674 * 1 2 3 27 27 H 1.09007 * 109.47073 * 304.46937 * 1 2 3 28 28 H 1.08997 * 109.47193 * 64.47001 * 1 2 3 29 29 H 0.97000 * 120.00140 * 179.97438 * 13 12 10 30 30 H 1.08007 * 126.57874 * 0.02979 * 19 18 8 31 31 H 1.08007 * 126.58006 * 180.16403 * 20 19 18 32 32 H 1.08003 * 125.79059 * 179.75202 * 21 20 19 33 33 H 1.09005 * 115.54992 * 155.65228 * 23 3 2 34 34 H 1.08999 * 117.49493 * 359.97438 * 24 23 3 35 35 H 1.09000 * 117.50247 * 145.02442 * 24 23 3 36 36 H 1.08994 * 117.49954 * 214.98236 * 25 23 3 37 37 H 1.08999 * 117.49551 * 0.02562 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2937 2.0222 0.4012 5 6 3.2509 1.3030 0.8554 6 8 3.6521 0.2689 1.3348 7 8 3.9102 2.4494 1.0849 8 6 5.0967 2.3720 1.9183 9 1 5.5615 1.3934 1.7988 10 6 6.0714 3.4448 1.5055 11 1 5.8240 4.1171 0.6973 12 6 7.2788 3.5679 2.1595 13 7 7.5803 2.7488 3.1433 14 14 8.4872 4.8971 1.6474 15 1 7.8542 6.2306 1.8090 16 1 9.7006 4.8181 2.4998 17 1 8.8678 4.6990 0.2257 18 6 4.7110 2.5722 3.3612 19 6 5.2771 1.9632 4.4185 20 6 4.6136 2.4429 5.5712 21 6 3.6761 3.3100 5.1487 22 8 3.7397 3.3844 3.8092 23 6 2.3787 1.6996 -1.4317 24 6 1.8727 0.8033 -2.5637 25 6 3.3558 0.7943 -2.1845 26 1 -0.3633 -1.0245 0.0802 27 1 -0.3633 0.5817 0.8473 28 1 -0.3633 0.4429 -0.9273 29 1 8.4299 2.8352 3.6032 30 1 6.0851 1.2470 4.3922 31 1 4.8177 2.1638 6.5944 32 1 2.9887 3.8539 5.7796 33 1 2.4345 2.7710 -1.6248 34 1 1.2776 -0.0675 -2.2884 35 1 1.5961 1.2848 -3.5016 36 1 4.0541 1.2699 -2.8730 37 1 3.7357 -0.0824 -1.6599 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520425584.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:06 Heat of formation + Delta-G solvation = -81.323134 kcal Electronic energy + Delta-G solvation = -22517.633970 eV Core-core repulsion = 19035.625957 eV Total energy + Delta-G solvation = -3482.008012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.34326 -39.98031 -38.25193 -35.88170 -35.51251 -33.30221 -31.68302 -29.97310 -28.82631 -26.69313 -26.07824 -23.21388 -22.28966 -21.52252 -20.59966 -20.00308 -19.22452 -17.31163 -17.07834 -16.71545 -16.45803 -15.87741 -15.44147 -14.87750 -14.80312 -14.49008 -14.47180 -13.85556 -13.28654 -12.80961 -12.57268 -12.15681 -11.79011 -11.73126 -11.56457 -11.39492 -11.32279 -11.24580 -11.10964 -10.95213 -10.50975 -10.37618 -10.34045 -10.09006 -9.81268 -9.43681 -9.27719 -8.82609 -8.63170 -7.24408 -6.20627 -4.39940 2.81787 2.88334 3.07107 3.23556 3.26883 3.30815 3.76772 3.92811 4.15373 4.20967 4.39590 4.67231 4.93707 5.05273 5.10170 5.20835 5.29108 5.42927 5.46392 5.57939 5.60352 5.74309 5.85150 6.00744 6.07512 6.21284 6.32369 6.38247 6.72069 6.99996 7.03245 7.17778 7.24743 7.39437 7.69624 7.73139 7.85634 8.36838 8.52575 8.78776 9.26856 10.76866 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.016857 B = 0.006299 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.626287 B = 4444.299501 C = 5628.278363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.128 3.872 4 H 0.099 0.901 5 C 0.457 3.543 6 O -0.497 6.497 7 O -0.344 6.344 8 C 0.301 3.699 9 H 0.078 0.922 10 C -0.529 4.529 11 H 0.078 0.922 12 C 0.069 3.931 13 N -0.868 5.868 14 Si 0.915 3.085 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.272 1.272 18 C 0.020 3.980 19 C -0.175 4.175 20 C -0.218 4.218 21 C -0.090 4.090 22 O -0.179 6.179 23 C -0.175 4.175 24 C -0.168 4.168 25 C -0.166 4.166 26 H 0.089 0.911 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.269 0.731 30 H 0.146 0.854 31 H 0.131 0.869 32 H 0.184 0.816 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.445 -1.556 -5.372 12.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.275 6.275 3 C 0.068 3.932 4 H 0.117 0.883 5 C 0.298 3.702 6 O -0.384 6.384 7 O -0.260 6.260 8 C 0.247 3.753 9 H 0.096 0.904 10 C -0.566 4.566 11 H 0.096 0.904 12 C -0.137 4.137 13 N -0.502 5.502 14 Si 0.741 3.259 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.197 1.197 18 C -0.031 4.031 19 C -0.194 4.194 20 C -0.237 4.237 21 C -0.158 4.158 22 O -0.076 6.076 23 C -0.194 4.194 24 C -0.205 4.205 25 C -0.203 4.203 26 H 0.108 0.892 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.163 0.837 31 H 0.149 0.851 32 H 0.201 0.799 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.192 -1.899 -5.240 12.503 hybrid contribution 0.757 0.891 0.451 1.254 sum -10.435 -1.008 -4.788 11.525 Atomic orbital electron populations 1.22938 0.80558 1.03077 1.00335 1.87990 1.19741 1.25253 1.94557 1.20886 0.92692 0.86405 0.93176 0.88317 1.23077 0.85018 0.83082 0.79066 1.90630 1.66123 1.33531 1.48125 1.86520 1.41211 1.33605 1.64702 1.19186 0.78296 1.00634 0.77136 0.90433 1.20844 0.99198 1.17107 1.19465 0.90425 1.24940 0.97756 0.96651 0.94306 1.70022 1.23301 1.36262 1.20661 0.86280 0.79573 0.81344 0.78694 1.19872 1.20915 1.19708 1.23588 0.89650 0.91571 0.98259 1.21300 1.02571 1.05297 0.90271 1.21717 0.99988 1.02619 0.99405 1.23594 1.04579 1.05349 0.82266 1.83981 1.47827 1.54467 1.21341 1.22636 1.07222 0.98606 0.90901 1.22968 0.97942 1.01952 0.97627 1.22949 0.92414 1.01974 1.02922 0.89238 0.93671 0.93505 0.92074 0.83656 0.85141 0.79904 0.85843 0.88057 0.88852 0.88422 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.23 101.05 1.03 1.32 16 2 O -0.36 -5.58 8.54 -55.13 -0.47 -6.05 16 3 C 0.13 2.07 3.09 -27.88 -0.09 1.98 16 4 H 0.10 1.37 7.65 -51.93 -0.40 0.97 16 5 C 0.46 9.88 6.94 36.01 0.25 10.13 16 6 O -0.50 -12.28 15.73 -25.47 -0.40 -12.68 16 7 O -0.34 -8.21 9.83 -42.05 -0.41 -8.63 16 8 C 0.30 8.04 2.41 -29.04 -0.07 7.97 16 9 H 0.08 2.24 7.15 -51.93 -0.37 1.86 16 10 C -0.53 -14.58 8.89 -34.44 -0.31 -14.89 16 11 H 0.08 2.09 7.81 -52.49 -0.41 1.68 16 12 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 13 N -0.87 -23.97 10.50 55.43 0.58 -23.38 16 14 Si 0.91 20.85 29.54 -169.99 -5.02 15.82 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 C 0.02 0.53 5.66 -35.63 -0.20 0.33 16 19 C -0.18 -4.43 9.05 -39.70 -0.36 -4.79 16 20 C -0.22 -4.72 10.91 -39.71 -0.43 -5.16 16 21 C -0.09 -1.88 12.09 29.41 0.36 -1.52 16 22 O -0.18 -4.43 10.63 2.01 0.02 -4.41 16 23 C -0.18 -2.46 5.81 -90.62 -0.53 -2.98 16 24 C -0.17 -1.95 9.56 -26.69 -0.26 -2.20 16 25 C -0.17 -2.36 9.83 -26.69 -0.26 -2.62 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.45 8.00 -51.93 -0.42 0.03 16 28 H 0.05 0.40 7.46 -51.93 -0.39 0.02 16 29 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.15 3.79 7.51 -52.48 -0.39 3.40 16 31 H 0.13 2.39 8.06 -52.48 -0.42 1.97 16 32 H 0.18 2.86 8.06 -52.48 -0.42 2.44 16 33 H 0.12 1.60 8.14 -51.93 -0.42 1.17 16 34 H 0.10 1.16 6.23 -51.93 -0.32 0.84 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 322.81 15.07 4.86 4.86 Total: -1.00 -31.96 322.81 -6.59 -38.55 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -4.79 Total: 6.57 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -0.96 Total: -10.66 kcal Atomic # 7 Polarization: -23.97 SS G_CDS: 0.58 Total: -23.38 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -1.26 Total: -31.76 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.96 -6.59 -38.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520425584.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.771 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds