Wall clock time and date at job start Tue Mar 31 2020 01:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00009 * 2 1 4 4 H 1.08994 * 109.47233 * 22.97929 * 3 2 1 5 5 C 1.50699 * 109.47196 * 142.98379 * 3 2 1 6 6 O 1.20831 * 119.99996 * 4.99454 * 5 3 2 7 7 O 1.34227 * 120.00186 * 185.00075 * 5 3 2 8 8 C 1.45201 * 117.00167 * 179.97438 * 7 5 3 9 9 H 1.08996 * 109.47078 * 29.99771 * 8 7 5 10 10 C 1.50701 * 109.47162 * 149.99913 * 8 7 5 11 11 H 1.07998 * 119.99906 * 359.97438 * 10 8 7 12 12 C 1.37870 * 120.00198 * 179.97438 * 10 8 7 13 13 N 1.31516 * 119.99971 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 120.00227 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47341 * 60.00063 * 14 12 10 16 16 H 1.48501 * 109.47345 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47324 * 300.00282 * 14 12 10 18 18 C 1.50695 * 109.47204 * 269.99634 * 8 7 5 19 19 C 1.34511 * 125.78955 * 144.71247 * 18 8 7 20 20 C 1.41385 * 106.84069 * 179.89238 * 19 18 8 21 21 C 1.34504 * 106.84275 * 0.37620 * 20 19 18 22 22 O 1.34303 * 108.42187 * 359.76852 * 21 20 19 23 23 C 1.52998 * 109.46865 * 262.98016 * 3 2 1 24 24 C 1.52998 * 117.50275 * 9.98365 * 23 3 2 25 25 C 1.53006 * 117.50200 * 301.31902 * 23 3 2 26 26 H 1.08999 * 109.46989 * 184.47674 * 1 2 3 27 27 H 1.09007 * 109.47073 * 304.46937 * 1 2 3 28 28 H 1.08997 * 109.47193 * 64.47001 * 1 2 3 29 29 H 0.97000 * 120.00140 * 179.97438 * 13 12 10 30 30 H 1.08007 * 126.57874 * 0.02979 * 19 18 8 31 31 H 1.08007 * 126.58006 * 180.16403 * 20 19 18 32 32 H 1.08003 * 125.79059 * 179.75202 * 21 20 19 33 33 H 1.09005 * 115.54992 * 155.65228 * 23 3 2 34 34 H 1.08999 * 117.49493 * 359.97438 * 24 23 3 35 35 H 1.09000 * 117.50247 * 145.02442 * 24 23 3 36 36 H 1.08994 * 117.49954 * 214.98236 * 25 23 3 37 37 H 1.08999 * 117.49551 * 0.02562 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2937 2.0222 0.4012 5 6 3.2509 1.3030 0.8554 6 8 3.6521 0.2689 1.3348 7 8 3.9102 2.4494 1.0849 8 6 5.0967 2.3720 1.9183 9 1 5.5615 1.3934 1.7988 10 6 6.0714 3.4448 1.5055 11 1 5.8240 4.1171 0.6973 12 6 7.2788 3.5679 2.1595 13 7 7.5803 2.7488 3.1433 14 14 8.4872 4.8971 1.6474 15 1 7.8542 6.2306 1.8090 16 1 9.7006 4.8181 2.4998 17 1 8.8678 4.6990 0.2257 18 6 4.7110 2.5722 3.3612 19 6 5.2771 1.9632 4.4185 20 6 4.6136 2.4429 5.5712 21 6 3.6761 3.3100 5.1487 22 8 3.7397 3.3844 3.8092 23 6 2.3787 1.6996 -1.4317 24 6 1.8727 0.8033 -2.5637 25 6 3.3558 0.7943 -2.1845 26 1 -0.3633 -1.0245 0.0802 27 1 -0.3633 0.5817 0.8473 28 1 -0.3633 0.4429 -0.9273 29 1 8.4299 2.8352 3.6032 30 1 6.0851 1.2470 4.3922 31 1 4.8177 2.1638 6.5944 32 1 2.9887 3.8539 5.7796 33 1 2.4345 2.7710 -1.6248 34 1 1.2776 -0.0675 -2.2884 35 1 1.5961 1.2848 -3.5016 36 1 4.0541 1.2699 -2.8730 37 1 3.7357 -0.0824 -1.6599 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520425584.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:05 Heat of formation + Delta-G solvation = -100.148029 kcal Electronic energy + Delta-G solvation = -22518.450278 eV Core-core repulsion = 19035.625957 eV Total energy + Delta-G solvation = -3482.824321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.19553 -41.57605 -39.62123 -37.48653 -36.84466 -35.32405 -33.54309 -31.80193 -30.19692 -28.56316 -27.13118 -25.11369 -23.46930 -22.90282 -22.37605 -21.57376 -20.96368 -19.14694 -18.64992 -18.31069 -17.95531 -17.42040 -17.02503 -16.63581 -16.48178 -16.31538 -15.51755 -15.24049 -14.81922 -14.46330 -13.93376 -13.86646 -13.52470 -13.49907 -13.17413 -13.04438 -12.90693 -12.78562 -12.39488 -12.29371 -12.22892 -12.06590 -11.90154 -11.41918 -11.36093 -10.92950 -10.81944 -10.69397 -10.52164 -9.12945 -8.23675 -6.54018 1.06897 1.18397 1.38218 1.43806 1.49176 1.59972 2.05806 2.34326 2.39180 2.68290 2.99104 3.09928 3.53763 3.75159 3.80779 4.13164 4.18343 4.24349 4.36915 4.39007 4.52519 4.55986 4.58054 4.65256 4.78071 4.84599 4.97512 5.13945 5.16286 5.29569 5.31702 5.39556 5.45560 5.65152 5.80603 5.92759 5.97774 6.46918 6.56673 6.88185 7.17739 8.72152 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.016857 B = 0.006299 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.626287 B = 4444.299501 C = 5628.278363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.384 6.384 3 C 0.138 3.862 4 H 0.126 0.874 5 C 0.448 3.552 6 O -0.539 6.539 7 O -0.348 6.348 8 C 0.304 3.696 9 H 0.037 0.963 10 C -0.555 4.555 11 H 0.077 0.923 12 C 0.023 3.977 13 N -0.892 5.892 14 Si 0.982 3.018 15 H -0.268 1.268 16 H -0.277 1.277 17 H -0.262 1.262 18 C -0.011 4.011 19 C -0.191 4.191 20 C -0.229 4.229 21 C -0.069 4.069 22 O -0.195 6.195 23 C -0.186 4.186 24 C -0.129 4.129 25 C -0.192 4.192 26 H 0.104 0.896 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.271 0.729 30 H 0.124 0.876 31 H 0.166 0.834 32 H 0.242 0.758 33 H 0.138 0.862 34 H 0.105 0.895 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.315 0.141 -5.704 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.303 6.303 3 C 0.078 3.922 4 H 0.143 0.857 5 C 0.292 3.708 6 O -0.428 6.428 7 O -0.265 6.265 8 C 0.250 3.750 9 H 0.054 0.946 10 C -0.591 4.591 11 H 0.095 0.905 12 C -0.180 4.180 13 N -0.526 5.526 14 Si 0.805 3.195 15 H -0.193 1.193 16 H -0.202 1.202 17 H -0.187 1.187 18 C -0.061 4.061 19 C -0.211 4.211 20 C -0.248 4.248 21 C -0.135 4.135 22 O -0.092 6.092 23 C -0.204 4.204 24 C -0.165 4.165 25 C -0.229 4.229 26 H 0.123 0.877 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.142 0.858 31 H 0.183 0.817 32 H 0.258 0.742 33 H 0.155 0.845 34 H 0.123 0.877 35 H 0.144 0.856 36 H 0.125 0.875 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.091 -0.213 -5.585 14.234 hybrid contribution 1.249 0.257 0.624 1.420 sum -11.842 0.044 -4.961 12.839 Atomic orbital electron populations 1.23253 0.77796 1.04621 1.02045 1.87968 1.22689 1.24992 1.94673 1.20945 0.90309 0.87576 0.93338 0.85660 1.24422 0.86024 0.81751 0.78645 1.90594 1.67586 1.34680 1.49977 1.86506 1.40548 1.34970 1.64431 1.18741 0.79337 0.98384 0.78531 0.94563 1.21113 1.00360 1.17551 1.20112 0.90487 1.25857 0.99234 0.98807 0.94096 1.70168 1.23651 1.37486 1.21333 0.85242 0.77136 0.78348 0.78779 1.19262 1.20214 1.18655 1.23357 0.91276 0.93393 0.98100 1.21368 1.02405 1.05190 0.92122 1.22065 0.99900 1.02898 0.99937 1.24705 1.04043 1.03869 0.80932 1.83952 1.47417 1.54342 1.23486 1.22721 1.08001 0.99542 0.90170 1.23073 0.95042 1.00932 0.97474 1.22932 0.94653 1.01410 1.03935 0.87722 0.92941 0.90903 0.91991 0.85786 0.81673 0.74170 0.84471 0.87665 0.85577 0.87532 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.23 113.37 1.16 1.50 16 2 O -0.38 -11.78 8.54 -129.95 -1.11 -12.89 16 3 C 0.14 4.39 3.09 29.85 0.09 4.49 16 4 H 0.13 3.27 7.65 -2.39 -0.02 3.25 16 5 C 0.45 20.27 6.94 71.24 0.49 20.76 16 6 O -0.54 -28.47 15.73 28.37 0.45 -28.02 16 7 O -0.35 -17.41 9.83 -48.72 -0.48 -17.89 16 8 C 0.30 17.21 2.41 29.10 0.07 17.28 16 9 H 0.04 2.31 7.15 -2.39 -0.02 2.29 16 10 C -0.55 -31.75 8.89 25.60 0.23 -31.52 16 11 H 0.08 4.27 7.81 -2.91 -0.02 4.25 16 12 C 0.02 1.28 5.30 84.65 0.45 1.73 16 13 N -0.89 -50.98 10.50 21.44 0.23 -50.75 16 14 Si 0.98 43.04 29.54 68.60 2.03 45.06 16 15 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 16 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 17 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 18 C -0.01 -0.59 5.66 24.83 0.14 -0.45 16 19 C -0.19 -10.01 9.05 22.19 0.20 -9.80 16 20 C -0.23 -9.65 10.91 22.19 0.24 -9.40 16 21 C -0.07 -2.70 12.09 66.96 0.81 -1.89 16 22 O -0.19 -9.55 10.63 0.97 0.01 -9.54 16 23 C -0.19 -4.99 5.81 -10.79 -0.06 -5.05 16 24 C -0.13 -2.65 9.56 30.62 0.29 -2.35 16 25 C -0.19 -5.50 9.83 30.62 0.30 -5.20 16 26 H 0.10 1.64 8.14 -2.39 -0.02 1.63 16 27 H 0.05 0.92 8.00 -2.38 -0.02 0.90 16 28 H 0.07 1.00 7.46 -2.39 -0.02 0.98 16 29 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.12 6.90 7.51 -2.91 -0.02 6.88 16 31 H 0.17 5.64 8.06 -2.91 -0.02 5.62 16 32 H 0.24 6.28 8.06 -2.91 -0.02 6.26 16 33 H 0.14 3.29 8.14 -2.38 -0.02 3.27 16 34 H 0.11 2.12 6.23 -2.39 -0.01 2.10 16 35 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -74.45 322.81 6.61 -67.84 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 1.07 Total: 26.11 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 4.42 Total: -19.92 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.23 Total: -50.75 kcal Atomic # 8 Polarization: -67.20 SS G_CDS: -1.13 Total: -68.34 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -74.45 6.61 -67.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520425584.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.312 kcal (2) G-P(sol) polarization free energy of solvation -74.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds