Wall clock time and date at job start Tue Mar 31 2020 01:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99902 * 2 1 4 4 H 1.09002 * 109.46985 * 328.97165 * 3 2 1 5 5 C 1.50699 * 109.47320 * 88.97158 * 3 2 1 6 6 O 1.20829 * 119.99739 * 5.00660 * 5 3 2 7 7 O 1.34225 * 119.99902 * 185.27273 * 5 3 2 8 8 C 1.45199 * 116.99715 * 179.72880 * 7 5 3 9 9 H 1.09001 * 109.47384 * 330.00014 * 8 7 5 10 10 C 1.50707 * 109.47059 * 210.00478 * 8 7 5 11 11 H 1.07997 * 119.99929 * 359.97438 * 10 8 7 12 12 C 1.37875 * 120.00109 * 180.02562 * 10 8 7 13 13 N 1.31512 * 120.00096 * 359.97438 * 12 10 8 14 14 Si 1.86793 * 120.00117 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47053 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47308 * 119.99492 * 14 12 10 17 17 H 1.48500 * 109.47087 * 239.99770 * 14 12 10 18 18 C 1.50695 * 109.47333 * 90.00297 * 8 7 5 19 19 C 1.34519 * 125.79119 * 219.99775 * 18 8 7 20 20 C 1.41377 * 106.83926 * 179.97438 * 19 18 8 21 21 C 1.34511 * 106.84512 * 0.02562 * 20 19 18 22 22 O 1.34299 * 125.79166 * 39.69048 * 18 8 7 23 23 C 1.53005 * 109.47288 * 208.97543 * 3 2 1 24 24 C 1.52998 * 117.50111 * 131.30472 * 23 3 2 25 25 C 1.53005 * 117.49749 * 62.64580 * 23 3 2 26 26 H 1.09003 * 109.47085 * 64.86843 * 1 2 3 27 27 H 1.09003 * 109.46584 * 184.86292 * 1 2 3 28 28 H 1.08999 * 109.47201 * 304.86099 * 1 2 3 29 29 H 0.96999 * 120.00405 * 180.02562 * 13 12 10 30 30 H 1.08003 * 126.57526 * 0.03753 * 19 18 8 31 31 H 1.08009 * 126.57696 * 179.97438 * 20 19 18 32 32 H 1.08004 * 125.78875 * 180.02562 * 21 20 19 33 33 H 1.08995 * 115.54678 * 276.98226 * 23 3 2 34 34 H 1.09008 * 117.49795 * 359.97438 * 24 23 3 35 35 H 1.09000 * 117.49975 * 145.01999 * 24 23 3 36 36 H 1.09000 * 117.49371 * 214.98275 * 25 23 3 37 37 H 1.08998 * 117.50088 * 359.97438 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3535 1.9956 -0.5297 5 6 2.1912 1.7748 1.4206 6 8 1.9418 1.0305 2.3391 7 8 2.6245 3.0214 1.6654 8 6 2.7698 3.4071 3.0577 9 1 2.0436 2.8644 3.6628 10 6 2.5316 4.8888 3.1960 11 1 2.2950 5.4813 2.3246 12 6 2.6166 5.4880 4.4348 13 7 2.9051 4.7666 5.4958 14 14 2.3220 7.3246 4.6061 15 1 2.0174 7.9035 3.2729 16 1 1.1764 7.5590 5.5215 17 1 3.5386 7.9715 5.1599 18 6 4.1628 3.0762 3.5279 19 6 4.4873 2.5678 4.7302 20 6 5.8927 2.4150 4.7445 21 6 6.3431 2.8396 3.5503 22 8 5.2903 3.2336 2.8154 23 6 3.3705 1.2582 -0.6988 24 6 3.6523 2.3150 -1.7687 25 6 3.3922 0.8628 -2.1767 26 1 -0.3633 0.4365 -0.9304 27 1 -0.3632 -1.0240 0.0871 28 1 -0.3633 0.5874 0.8432 29 1 2.9646 5.1881 6.3674 30 1 3.8049 2.3224 5.5306 31 1 6.4902 2.0316 5.5586 32 1 7.3757 2.8559 3.2342 33 1 4.2064 0.9342 -0.0789 34 1 2.8684 3.0438 -1.9750 35 1 4.6738 2.6861 -1.8528 36 1 4.2426 0.2790 -2.5291 37 1 2.4374 0.6359 -2.6511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520425586.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:11 Heat of formation + Delta-G solvation = -84.721627 kcal Electronic energy + Delta-G solvation = -22547.377714 eV Core-core repulsion = 19065.222332 eV Total energy + Delta-G solvation = -3482.155382 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.34467 -39.94779 -38.01909 -36.39185 -35.47984 -33.28439 -31.70534 -29.93667 -28.74872 -26.70086 -25.99528 -23.15997 -22.29238 -21.47702 -20.62993 -20.23640 -19.28062 -17.61390 -17.00467 -16.68088 -16.11512 -15.88343 -15.49694 -14.95281 -14.77122 -14.51265 -14.39909 -13.86744 -13.35557 -12.98904 -12.60745 -12.05683 -11.78270 -11.64524 -11.56644 -11.50782 -11.31383 -11.16888 -11.12445 -10.98403 -10.58587 -10.40532 -10.37058 -10.12429 -10.09193 -9.40718 -9.20367 -8.82979 -8.65841 -7.25588 -6.22946 -4.41158 2.79891 2.86529 3.18206 3.20972 3.27311 3.33182 3.57338 3.93686 4.18517 4.19694 4.29887 4.71658 4.90308 4.98452 5.05578 5.12997 5.30522 5.39288 5.58121 5.60275 5.68004 5.72671 5.84939 5.92926 6.06888 6.14587 6.20163 6.36148 6.69359 6.98362 7.02432 7.14325 7.23250 7.37078 7.68320 7.69213 7.84475 8.35580 8.50422 8.77033 9.25840 10.75871 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.016466 B = 0.006073 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.069754 B = 4609.234173 C = 5109.193673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.354 6.354 3 C 0.131 3.869 4 H 0.094 0.906 5 C 0.432 3.568 6 O -0.501 6.501 7 O -0.343 6.343 8 C 0.297 3.703 9 H 0.077 0.923 10 C -0.530 4.530 11 H 0.078 0.922 12 C 0.069 3.931 13 N -0.867 5.867 14 Si 0.913 3.087 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.281 1.281 18 C 0.027 3.973 19 C -0.179 4.179 20 C -0.217 4.217 21 C -0.089 4.089 22 O -0.176 6.176 23 C -0.147 4.147 24 C -0.159 4.159 25 C -0.165 4.165 26 H 0.042 0.958 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.268 0.732 30 H 0.140 0.860 31 H 0.131 0.869 32 H 0.184 0.816 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.055 -5.381 -10.999 12.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.272 6.272 3 C 0.072 3.928 4 H 0.112 0.888 5 C 0.273 3.727 6 O -0.389 6.389 7 O -0.259 6.259 8 C 0.244 3.756 9 H 0.094 0.906 10 C -0.568 4.568 11 H 0.096 0.904 12 C -0.137 4.137 13 N -0.502 5.502 14 Si 0.740 3.260 15 H -0.193 1.193 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.024 4.024 19 C -0.199 4.199 20 C -0.237 4.237 21 C -0.156 4.156 22 O -0.072 6.072 23 C -0.165 4.165 24 C -0.196 4.196 25 C -0.202 4.202 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.158 0.842 31 H 0.149 0.851 32 H 0.201 0.799 33 H 0.132 0.868 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.129 -5.620 -10.764 12.144 hybrid contribution -0.035 1.086 0.976 1.460 sum 0.095 -4.534 -9.789 10.788 Atomic orbital electron populations 1.22898 0.80649 1.03292 1.00136 1.88004 1.20024 1.24950 1.94189 1.21078 0.95514 0.86124 0.90103 0.88835 1.24091 0.74468 0.81643 0.92459 1.90626 1.46552 1.55367 1.46388 1.86561 1.75568 1.29242 1.34553 1.19182 0.85504 0.96774 0.74158 0.90570 1.20926 1.50555 0.90363 0.94915 0.90360 1.24952 0.94090 0.99509 0.95133 1.70044 1.44899 1.36011 0.99226 0.86185 0.77986 0.83319 0.78522 1.19262 1.20551 1.20641 1.23503 0.87609 0.98709 0.92566 1.21212 0.94222 1.05963 0.98477 1.21687 0.95838 1.07786 0.98382 1.23596 0.91699 1.07289 0.93023 1.83985 1.14671 1.66487 1.42064 1.21929 0.96129 1.06554 0.91907 1.23038 1.03571 0.91987 1.01034 1.22898 1.03306 0.98050 0.95913 0.93902 0.89175 0.93389 0.92194 0.84175 0.85149 0.79884 0.86837 0.88229 0.87962 0.88480 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.79 101.05 1.09 1.42 16 2 O -0.35 -5.68 9.84 -55.14 -0.54 -6.22 16 3 C 0.13 2.14 2.80 -27.88 -0.08 2.06 16 4 H 0.09 1.30 7.62 -51.93 -0.40 0.90 16 5 C 0.43 9.28 7.14 36.00 0.26 9.54 16 6 O -0.50 -12.21 15.73 -25.47 -0.40 -12.61 16 7 O -0.34 -8.16 9.85 -41.33 -0.41 -8.57 16 8 C 0.30 7.93 2.42 -29.03 -0.07 7.86 16 9 H 0.08 2.19 7.15 -51.93 -0.37 1.82 16 10 C -0.53 -14.62 8.89 -34.44 -0.31 -14.93 16 11 H 0.08 2.11 7.81 -52.49 -0.41 1.70 16 12 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 13 N -0.87 -24.06 10.95 55.43 0.61 -23.45 16 14 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 15 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 C 0.03 0.71 5.53 -35.63 -0.20 0.52 16 19 C -0.18 -4.54 9.17 -39.70 -0.36 -4.90 16 20 C -0.22 -4.73 10.91 -39.71 -0.43 -5.16 16 21 C -0.09 -1.84 12.09 29.41 0.36 -1.49 16 22 O -0.18 -4.33 10.65 4.36 0.05 -4.29 16 23 C -0.15 -2.14 5.35 -90.62 -0.48 -2.63 16 24 C -0.16 -1.90 10.18 -26.69 -0.27 -2.17 16 25 C -0.16 -1.82 10.20 -26.69 -0.27 -2.09 16 26 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.14 3.63 7.87 -52.48 -0.41 3.22 16 31 H 0.13 2.40 8.06 -52.48 -0.42 1.98 16 32 H 0.18 2.88 8.06 -52.48 -0.42 2.46 16 33 H 0.11 1.82 8.13 -51.93 -0.42 1.40 16 34 H 0.10 1.11 8.06 -51.92 -0.42 0.69 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 328.49 15.07 4.95 4.95 Total: -1.00 -32.03 328.49 -6.58 -38.61 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -4.94 Total: 5.97 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -0.87 Total: -10.20 kcal Atomic # 7 Polarization: -24.06 SS G_CDS: 0.61 Total: -23.45 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -1.30 Total: -31.68 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.03 -6.58 -38.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520425586.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.113 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds