Wall clock time and date at job start Tue Mar 31 2020 02:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 109.62481 * 2 1 4 4 O 1.43361 * 109.63405 * 120.39349 * 2 1 3 5 5 C 1.44191 * 107.29122 * 119.21069 * 4 2 1 6 6 C 1.54915 * 103.07492 * 338.56643 * 5 4 2 7 7 H 1.08998 * 111.00872 * 277.43835 * 6 5 4 8 8 C 1.50706 * 110.98030 * 153.66664 * 6 5 4 9 9 C 1.33117 * 120.00017 * 135.71713 * 8 6 5 10 10 C 1.46952 * 120.00005 * 16.32260 * 9 8 6 11 11 O 1.21658 * 120.00154 * 7.04835 * 10 9 8 12 12 N 1.34781 * 120.00095 * 187.04385 * 10 9 8 13 13 C 1.36813 * 119.99928 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00108 * 322.58688 * 13 12 10 15 15 C 1.39072 * 119.99772 * 142.59663 * 13 12 10 16 16 N 1.31354 * 119.99947 * 160.44045 * 15 13 12 17 17 Si 1.86798 * 120.00312 * 340.43776 * 15 13 12 18 18 H 1.48506 * 109.47107 * 92.92951 * 17 15 13 19 19 H 1.48500 * 109.47497 * 212.93464 * 17 15 13 20 20 H 1.48501 * 109.46803 * 332.93353 * 17 15 13 21 21 C 1.46503 * 119.99917 * 0.02562 * 12 10 9 22 22 C 1.47203 * 109.46902 * 83.60544 * 21 12 10 23 23 N 7.97185 * 98.91198 * 193.90104 * 2 1 3 24 24 O 1.43748 * 109.63278 * 239.76268 * 2 1 3 25 25 H 1.08997 * 109.47658 * 301.05794 * 1 2 3 26 26 H 1.08999 * 109.47603 * 61.05800 * 1 2 3 27 27 H 1.09006 * 109.47119 * 181.05844 * 1 2 3 28 28 H 1.08996 * 109.46598 * 178.93930 * 3 2 1 29 29 H 1.09000 * 109.46906 * 298.94002 * 3 2 1 30 30 H 1.09001 * 109.46649 * 58.94380 * 3 2 1 31 31 H 1.09001 * 110.69522 * 96.96096 * 5 4 2 32 32 H 1.08999 * 110.70076 * 220.16819 * 5 4 2 33 33 H 1.08001 * 119.99842 * 315.71677 * 8 6 5 34 34 H 1.08003 * 120.00225 * 196.32746 * 9 8 6 35 35 H 0.96996 * 119.99855 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.47199 * 203.60578 * 21 12 10 37 37 H 1.09001 * 109.47103 * 323.61069 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4412 0.0000 4 8 2.0117 -0.6831 1.1647 5 6 2.7885 -1.8097 0.7102 6 6 2.2653 -2.0380 -0.7299 7 1 1.3459 -2.6235 -0.7234 8 6 3.3151 -2.6967 -1.5874 9 6 2.9817 -3.7035 -2.3919 10 6 1.5701 -3.9434 -2.7226 11 8 0.7189 -3.1499 -2.3680 12 7 1.2185 -5.0425 -3.4189 13 6 -0.0957 -5.2656 -3.7272 14 1 -0.8678 -5.0110 -3.0163 15 6 -0.4372 -5.8203 -4.9559 16 7 -1.6115 -6.3861 -5.1174 17 14 0.7742 -5.7608 -6.3766 18 1 1.5834 -7.0060 -6.3897 19 1 0.0307 -5.6401 -7.6564 20 1 1.6716 -4.5890 -6.2131 21 6 2.2434 -5.9984 -3.8456 22 6 2.5372 -6.9278 -2.7425 23 7 2.7649 -7.6449 -1.8921 24 8 2.0129 -0.6818 -1.1697 25 1 -0.3634 0.5301 0.8803 26 1 -0.3634 0.4973 -0.8993 27 1 -0.3634 -1.0275 0.0190 28 1 3.1336 1.4383 0.0190 29 1 1.6975 1.9504 -0.8993 30 1 1.6665 1.9614 0.8804 31 1 3.8509 -1.5660 0.6999 32 1 2.5989 -2.6845 1.3321 33 1 4.3379 -2.3519 -1.5491 34 1 3.7487 -4.3441 -2.8016 35 1 -1.8498 -6.7727 -5.9745 36 1 1.8809 -6.5596 -4.7067 37 1 3.1511 -5.4601 -4.1185 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001542735293.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:44 Heat of formation + Delta-G solvation = -44.898976 kcal Electronic energy + Delta-G solvation = -22273.483088 eV Core-core repulsion = 18825.347296 eV Total energy + Delta-G solvation = -3448.135791 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.44751 -39.21335 -36.50063 -35.18962 -34.65793 -33.75147 -32.40731 -31.75408 -28.17002 -27.89143 -27.30357 -25.65003 -23.20916 -21.30602 -20.93521 -18.91093 -18.30779 -17.34807 -16.90405 -16.53895 -16.01461 -15.64143 -14.94598 -14.55344 -14.18170 -13.85832 -13.72072 -13.58936 -13.42635 -12.90978 -12.80707 -12.60738 -12.57769 -12.35253 -12.27532 -12.06506 -11.96949 -11.91746 -11.63222 -11.57421 -11.02611 -10.93039 -10.54235 -10.13733 -10.06108 -9.50745 -9.35505 -9.18490 -8.55289 -8.11937 -6.61110 -4.20848 1.52661 2.81682 2.95581 3.03331 3.08308 3.17820 3.60568 3.83964 3.92108 4.17222 4.25442 4.42175 4.67539 4.90709 4.93998 5.04654 5.11055 5.17301 5.27141 5.36610 5.47172 5.52583 5.62097 5.68514 5.73414 5.81356 5.84122 6.00878 6.15462 6.21493 6.37195 6.40496 6.64331 7.28230 7.33932 7.87618 8.02437 8.22609 8.69613 9.01635 9.44331 10.49833 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022184 B = 0.005141 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.842745 B = 5444.879971 C = 6026.284652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.248 3.752 3 C -0.151 4.151 4 O -0.383 6.383 5 C 0.025 3.975 6 C 0.064 3.936 7 H 0.131 0.869 8 C -0.096 4.096 9 C -0.172 4.172 10 C 0.488 3.512 11 O -0.536 6.536 12 N -0.450 5.450 13 C -0.320 4.320 14 H 0.113 0.887 15 C 0.061 3.939 16 N -0.849 5.849 17 Si 0.865 3.135 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.254 1.254 21 C 0.173 3.827 22 C 0.206 3.794 23 N -0.438 5.438 24 O -0.355 6.355 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.279 0.721 36 H 0.116 0.884 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.479 8.394 4.038 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.171 3.829 3 C -0.209 4.209 4 O -0.305 6.305 5 C -0.052 4.052 6 C 0.008 3.992 7 H 0.148 0.852 8 C -0.116 4.116 9 C -0.193 4.193 10 C 0.280 3.720 11 O -0.418 6.418 12 N -0.172 5.172 13 C -0.447 4.447 14 H 0.130 0.870 15 C -0.147 4.147 16 N -0.483 5.483 17 Si 0.691 3.309 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.177 1.177 21 C 0.046 3.954 22 C -0.114 4.114 23 N -0.117 5.117 24 O -0.275 6.275 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.164 7.794 5.330 13.873 hybrid contribution 0.497 -0.104 -1.335 1.429 sum 10.661 7.690 3.995 13.739 Atomic orbital electron populations 1.22329 0.93806 1.03936 1.02535 1.23325 0.93217 0.91019 0.75293 1.22053 1.02000 0.93941 1.02877 1.88832 1.69630 1.41953 1.30068 1.24242 0.95894 0.89474 0.95578 1.23588 0.99761 0.85303 0.90574 0.85246 1.23104 0.98615 0.94840 0.95070 1.23146 0.97217 0.99359 0.99614 1.18450 0.88106 0.81547 0.83909 1.90634 1.51900 1.44972 1.54264 1.43589 1.06785 1.15913 1.50870 1.19110 0.80916 1.42589 1.02045 0.86983 1.25449 0.96468 0.95169 0.97581 1.69683 1.21477 1.31597 1.25564 0.87154 0.81761 0.79162 0.82855 1.19496 1.20457 1.17737 1.19681 0.95000 0.89410 0.91273 1.29942 0.92548 0.93918 0.94959 1.81045 1.09505 1.10547 1.10567 1.89314 1.85752 1.21383 1.31091 0.91515 0.90657 0.91192 0.91833 0.90768 0.90909 0.91185 0.88543 0.85587 0.85488 0.91043 0.86698 0.87017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.20 37.16 0.34 -2.13 16 2 C 0.25 3.77 1.47 -26.73 -0.04 3.73 16 3 C -0.15 -1.82 9.24 37.16 0.34 -1.48 16 4 O -0.38 -5.90 10.87 -59.04 -0.64 -6.54 16 5 C 0.02 0.34 7.53 38.17 0.29 0.63 16 6 C 0.06 1.07 2.83 -26.87 -0.08 0.99 16 7 H 0.13 2.58 5.29 -51.93 -0.27 2.31 16 8 C -0.10 -1.41 9.31 -36.09 -0.34 -1.75 16 9 C -0.17 -2.75 9.06 -37.84 -0.34 -3.10 16 10 C 0.49 10.34 7.29 -12.73 -0.09 10.25 16 11 O -0.54 -13.12 13.26 5.23 0.07 -13.05 16 12 N -0.45 -9.79 2.17 -119.33 -0.26 -10.05 16 13 C -0.32 -8.26 9.38 -15.02 -0.14 -8.40 16 14 H 0.11 3.31 7.90 -52.49 -0.41 2.90 16 15 C 0.06 1.55 5.32 -17.45 -0.09 1.45 16 16 N -0.85 -22.79 13.95 55.50 0.77 -22.02 16 17 Si 0.86 17.69 24.93 -169.99 -4.24 13.45 16 18 H -0.27 -4.91 6.60 56.52 0.37 -4.54 16 19 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.25 -4.96 7.11 56.52 0.40 -4.56 16 21 C 0.17 3.01 4.11 -6.83 -0.03 2.98 16 22 C 0.21 3.72 15.47 -20.78 -0.32 3.40 16 23 N -0.44 -8.53 18.53 42.13 0.78 -7.75 16 24 O -0.35 -6.25 10.71 -59.04 -0.63 -6.88 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.82 8.03 -51.93 -0.42 0.41 16 32 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.13 1.58 6.27 -52.48 -0.33 1.25 16 35 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.12 2.06 3.31 -51.93 -0.17 1.89 16 37 H 0.11 1.43 6.39 -51.93 -0.33 1.10 16 LS Contribution 315.96 15.07 4.76 4.76 Total: -1.00 -30.66 315.96 -4.37 -35.02 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -4.48 Total: 6.48 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -0.50 Total: 6.58 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 1.30 Total: -39.82 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -1.20 Total: -26.47 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -4.24 Total: 13.45 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.66 -4.37 -35.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542735293.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.878 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds