Wall clock time and date at job start Tue Mar 31 2020 02:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 109.62481 * 2 1 4 4 O 1.43361 * 109.63405 * 120.39349 * 2 1 3 5 5 C 1.44191 * 107.29122 * 119.21069 * 4 2 1 6 6 C 1.54915 * 103.07492 * 338.56643 * 5 4 2 7 7 H 1.08998 * 111.00872 * 277.43835 * 6 5 4 8 8 C 1.50706 * 110.98030 * 153.66664 * 6 5 4 9 9 C 1.33117 * 120.00017 * 135.71713 * 8 6 5 10 10 C 1.46952 * 120.00005 * 16.32260 * 9 8 6 11 11 O 1.21658 * 120.00154 * 7.04835 * 10 9 8 12 12 N 1.34781 * 120.00095 * 187.04385 * 10 9 8 13 13 C 1.36813 * 119.99928 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00108 * 322.58688 * 13 12 10 15 15 C 1.39072 * 119.99772 * 142.59663 * 13 12 10 16 16 N 1.31354 * 119.99947 * 160.44045 * 15 13 12 17 17 Si 1.86798 * 120.00312 * 340.43776 * 15 13 12 18 18 H 1.48506 * 109.47107 * 92.92951 * 17 15 13 19 19 H 1.48500 * 109.47497 * 212.93464 * 17 15 13 20 20 H 1.48501 * 109.46803 * 332.93353 * 17 15 13 21 21 C 1.46503 * 119.99917 * 0.02562 * 12 10 9 22 22 C 1.47203 * 109.46902 * 83.60544 * 21 12 10 23 23 N 7.97185 * 98.91198 * 193.90104 * 2 1 3 24 24 O 1.43748 * 109.63278 * 239.76268 * 2 1 3 25 25 H 1.08997 * 109.47658 * 301.05794 * 1 2 3 26 26 H 1.08999 * 109.47603 * 61.05800 * 1 2 3 27 27 H 1.09006 * 109.47119 * 181.05844 * 1 2 3 28 28 H 1.08996 * 109.46598 * 178.93930 * 3 2 1 29 29 H 1.09000 * 109.46906 * 298.94002 * 3 2 1 30 30 H 1.09001 * 109.46649 * 58.94380 * 3 2 1 31 31 H 1.09001 * 110.69522 * 96.96096 * 5 4 2 32 32 H 1.08999 * 110.70076 * 220.16819 * 5 4 2 33 33 H 1.08001 * 119.99842 * 315.71677 * 8 6 5 34 34 H 1.08003 * 120.00225 * 196.32746 * 9 8 6 35 35 H 0.96996 * 119.99855 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.47199 * 203.60578 * 21 12 10 37 37 H 1.09001 * 109.47103 * 323.61069 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4412 0.0000 4 8 2.0117 -0.6831 1.1647 5 6 2.7885 -1.8097 0.7102 6 6 2.2653 -2.0380 -0.7299 7 1 1.3459 -2.6235 -0.7234 8 6 3.3151 -2.6967 -1.5874 9 6 2.9817 -3.7035 -2.3919 10 6 1.5701 -3.9434 -2.7226 11 8 0.7189 -3.1499 -2.3680 12 7 1.2185 -5.0425 -3.4189 13 6 -0.0957 -5.2656 -3.7272 14 1 -0.8678 -5.0110 -3.0163 15 6 -0.4372 -5.8203 -4.9559 16 7 -1.6115 -6.3861 -5.1174 17 14 0.7742 -5.7608 -6.3766 18 1 1.5834 -7.0060 -6.3897 19 1 0.0307 -5.6401 -7.6564 20 1 1.6716 -4.5890 -6.2131 21 6 2.2434 -5.9984 -3.8456 22 6 2.5372 -6.9278 -2.7425 23 7 2.7649 -7.6449 -1.8921 24 8 2.0129 -0.6818 -1.1697 25 1 -0.3634 0.5301 0.8803 26 1 -0.3634 0.4973 -0.8993 27 1 -0.3634 -1.0275 0.0190 28 1 3.1336 1.4383 0.0190 29 1 1.6975 1.9504 -0.8993 30 1 1.6665 1.9614 0.8804 31 1 3.8509 -1.5660 0.6999 32 1 2.5989 -2.6845 1.3321 33 1 4.3379 -2.3519 -1.5491 34 1 3.7487 -4.3441 -2.8016 35 1 -1.8498 -6.7727 -5.9745 36 1 1.8809 -6.5596 -4.7067 37 1 3.1511 -5.4601 -4.1185 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542735293.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:44 Heat of formation + Delta-G solvation = -66.788648 kcal Electronic energy + Delta-G solvation = -22274.432295 eV Core-core repulsion = 18825.347296 eV Total energy + Delta-G solvation = -3449.084999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.68830 -40.78287 -38.03800 -36.69131 -36.01053 -35.03799 -34.22284 -32.99833 -29.54896 -29.32097 -28.37439 -27.30313 -24.53435 -22.75588 -22.10556 -20.49168 -19.87663 -18.68194 -18.44983 -17.85750 -17.41386 -17.05829 -16.30780 -15.89328 -15.62573 -15.33058 -15.14927 -14.99351 -14.65593 -14.45615 -14.29252 -14.07251 -13.84185 -13.64883 -13.57282 -13.36881 -13.16239 -13.11339 -13.06659 -12.71976 -12.69861 -12.21380 -12.01414 -11.76468 -11.41373 -10.99409 -10.67403 -10.58966 -10.11302 -9.89306 -8.50915 -6.19834 0.25980 1.24627 1.40383 1.50613 1.52808 1.73144 2.20198 2.26757 2.49848 2.75933 2.82988 3.04067 3.21402 3.53493 3.80787 3.83535 3.92391 3.99511 4.09202 4.13230 4.25596 4.37020 4.52935 4.60259 4.63194 4.74251 4.75755 4.86979 4.99850 5.10950 5.15935 5.23523 5.34433 5.57599 6.02792 6.15113 6.42242 6.50005 6.86531 7.15238 7.73203 8.65596 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022184 B = 0.005141 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.842745 B = 5444.879971 C = 6026.284652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.238 3.762 3 C -0.144 4.144 4 O -0.395 6.395 5 C 0.029 3.971 6 C 0.050 3.950 7 H 0.084 0.916 8 C -0.070 4.070 9 C -0.186 4.186 10 C 0.483 3.517 11 O -0.584 6.584 12 N -0.464 5.464 13 C -0.339 4.339 14 H 0.044 0.956 15 C 0.010 3.990 16 N -0.908 5.908 17 Si 0.934 3.066 18 H -0.222 1.222 19 H -0.288 1.288 20 H -0.231 1.231 21 C 0.172 3.828 22 C 0.221 3.779 23 N -0.465 5.465 24 O -0.374 6.374 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.036 0.964 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.179 0.821 34 H 0.176 0.824 35 H 0.283 0.717 36 H 0.116 0.884 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.110 9.335 3.307 18.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.161 3.839 3 C -0.201 4.201 4 O -0.316 6.316 5 C -0.047 4.047 6 C -0.006 4.006 7 H 0.102 0.898 8 C -0.090 4.090 9 C -0.206 4.206 10 C 0.276 3.724 11 O -0.468 6.468 12 N -0.186 5.186 13 C -0.467 4.467 14 H 0.062 0.938 15 C -0.193 4.193 16 N -0.544 5.544 17 Si 0.754 3.246 18 H -0.146 1.146 19 H -0.215 1.215 20 H -0.153 1.153 21 C 0.047 3.953 22 C -0.098 4.098 23 N -0.144 5.144 24 O -0.295 6.295 25 H 0.108 0.892 26 H 0.093 0.907 27 H 0.055 0.945 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.196 0.804 34 H 0.193 0.807 35 H 0.093 0.907 36 H 0.133 0.867 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 14.822 8.718 4.629 17.808 hybrid contribution -1.064 -0.289 -0.904 1.426 sum 13.758 8.429 3.725 16.559 Atomic orbital electron populations 1.22353 0.94572 1.02094 1.03624 1.23623 0.93018 0.92535 0.74676 1.22032 1.02542 0.91547 1.04015 1.88804 1.70140 1.42433 1.30272 1.24364 0.97314 0.89487 0.93522 1.23521 0.99049 0.84846 0.93220 0.89827 1.23597 1.00166 0.92727 0.92528 1.23187 0.94381 1.01302 1.01769 1.19470 0.90250 0.80615 0.82075 1.90639 1.54149 1.46559 1.55406 1.43578 1.06045 1.17365 1.51582 1.18587 0.82247 1.44041 1.01830 0.93841 1.26367 0.98896 0.93810 1.00275 1.69829 1.24545 1.33468 1.26535 0.86082 0.79569 0.81925 0.77032 1.14632 1.21523 1.15342 1.20045 0.95867 0.88917 0.90478 1.30054 0.91678 0.93426 0.94628 1.81066 1.10663 1.11418 1.11245 1.89279 1.85942 1.21669 1.32650 0.89220 0.90719 0.94501 0.90913 0.90233 0.89161 0.87771 0.87833 0.80386 0.80667 0.90749 0.86710 0.80913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.12 9.20 71.98 0.66 -4.45 16 2 C 0.24 7.03 1.47 30.60 0.04 7.08 16 3 C -0.14 -3.14 9.24 71.99 0.67 -2.47 16 4 O -0.39 -11.63 10.87 -126.22 -1.37 -13.00 16 5 C 0.03 0.75 7.53 72.64 0.55 1.29 16 6 C 0.05 1.63 2.83 30.50 0.09 1.72 16 7 H 0.08 3.52 5.29 -2.39 -0.01 3.51 16 8 C -0.07 -1.81 9.31 24.54 0.23 -1.58 16 9 C -0.19 -5.30 9.06 23.40 0.21 -5.09 16 10 C 0.48 20.46 7.29 86.53 0.63 21.09 16 11 O -0.58 -30.24 13.26 -4.21 -0.06 -30.29 16 12 N -0.46 -20.15 2.17 -649.69 -1.41 -21.56 16 13 C -0.34 -18.59 9.38 84.12 0.79 -17.80 16 14 H 0.04 2.88 7.90 -2.91 -0.02 2.86 16 15 C 0.01 0.50 5.32 84.96 0.45 0.95 16 16 N -0.91 -51.49 13.95 21.68 0.30 -51.18 16 17 Si 0.93 35.19 24.93 68.60 1.71 36.90 16 18 H -0.22 -6.77 6.60 99.48 0.66 -6.12 16 19 H -0.29 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.23 -7.83 7.11 99.48 0.71 -7.12 16 21 C 0.17 5.42 4.11 84.57 0.35 5.77 16 22 C 0.22 7.49 15.47 89.45 1.38 8.88 16 23 N -0.46 -17.38 18.53 20.00 0.37 -17.01 16 24 O -0.37 -12.91 10.71 -126.22 -1.35 -14.27 16 25 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.10 1.98 8.03 -2.39 -0.02 1.96 16 32 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.18 3.23 6.27 -2.91 -0.02 3.21 16 35 H 0.28 14.62 8.31 -92.71 -0.77 13.85 16 36 H 0.12 3.67 3.31 -2.39 -0.01 3.66 16 37 H 0.17 3.30 6.39 -2.39 -0.02 3.28 16 Total: -1.00 -76.26 315.96 5.29 -70.97 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 1.04 Total: 24.06 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 6.05 Total: 15.38 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -0.74 Total: -89.75 kcal Atomic # 8 Polarization: -54.78 SS G_CDS: -2.78 Total: -57.56 kcal Atomic # 14 Polarization: 35.19 SS G_CDS: 1.71 Total: 36.90 kcal Total: -76.26 5.29 -70.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542735293.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.180 kcal (2) G-P(sol) polarization free energy of solvation -76.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds