Wall clock time and date at job start Tue Mar 31 2020 02:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41377 * 126.80413 * 2 1 4 4 C 1.35450 * 103.98925 * 180.16286 * 3 2 1 5 5 C 1.50698 * 126.78172 * 179.90920 * 4 3 2 6 6 C 1.50698 * 109.47230 * 89.70276 * 5 4 3 7 7 O 1.21280 * 119.99745 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99753 * 179.97438 * 6 5 4 9 9 C 1.47425 * 125.65138 * 0.02907 * 8 6 5 10 10 C 1.54908 * 104.92961 * 204.15299 * 9 8 6 11 11 C 1.55154 * 101.58289 * 322.93718 * 10 9 8 12 12 O 1.42898 * 110.72101 * 277.13570 * 11 10 9 13 13 C 1.50702 * 110.72191 * 154.04150 * 11 10 9 14 14 H 1.07998 * 120.00175 * 241.45665 * 13 11 10 15 15 C 1.37877 * 119.99903 * 61.45166 * 13 11 10 16 16 N 1.31513 * 120.00008 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99938 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47136 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46999 * 120.00414 * 17 15 13 20 20 H 1.48499 * 109.46864 * 240.00057 * 17 15 13 21 21 C 1.47290 * 125.79121 * 180.02562 * 8 6 5 22 22 O 1.34043 * 106.44098 * 359.64183 * 4 3 2 23 23 N 1.20918 * 111.57187 * 0.24465 * 22 4 3 24 24 H 1.09004 * 109.47920 * 270.26322 * 1 2 3 25 25 H 1.09010 * 109.47050 * 30.26183 * 1 2 3 26 26 H 1.09000 * 109.47675 * 150.25971 * 1 2 3 27 27 H 1.07997 * 128.00826 * 0.06194 * 3 2 1 28 28 H 1.09001 * 109.46865 * 329.70266 * 5 4 3 29 29 H 1.09000 * 109.47039 * 209.70806 * 5 4 3 30 30 H 1.09002 * 110.36696 * 85.25946 * 9 8 6 31 31 H 1.08995 * 110.36608 * 323.04783 * 9 8 6 32 32 H 1.09008 * 111.00494 * 81.01141 * 10 9 8 33 33 H 1.08999 * 111.00647 * 204.85975 * 10 9 8 34 34 H 0.96703 * 114.00272 * 298.55255 * 12 11 10 35 35 H 0.97000 * 119.99926 * 180.02562 * 16 15 13 36 36 H 1.09004 * 109.85762 * 59.50172 * 21 8 6 37 37 H 1.08995 * 110.00297 * 298.43119 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6068 -0.0037 5 6 4.9022 1.3694 -0.0073 6 6 5.3358 1.6297 1.4123 7 8 4.6566 1.2343 2.3359 8 7 6.4790 2.3009 1.6553 9 6 7.3961 2.8349 0.6320 10 6 8.7704 2.9333 1.3400 11 6 8.3540 3.3724 2.7687 12 8 8.1547 4.7863 2.8252 13 6 9.3837 2.9402 3.7807 14 1 9.1101 2.2581 4.5720 15 6 10.6752 3.4156 3.6962 16 7 11.0083 4.2466 2.7328 17 14 11.9517 2.8794 4.9501 18 1 11.3282 1.9474 5.9237 19 1 13.0704 2.1932 4.2552 20 1 12.4714 4.0710 5.6679 21 6 7.0219 2.6242 2.9858 22 8 3.4537 -0.7254 0.0024 23 7 2.2868 -1.0424 0.0043 24 1 -0.3635 0.0047 1.0276 25 1 -0.3634 0.8877 -0.5179 26 1 -0.3634 -0.8923 -0.5098 27 1 2.0710 2.1742 0.0009 28 1 4.7649 2.3187 -0.5251 29 1 5.6658 0.7836 -0.5190 30 1 7.0665 3.8209 0.3046 31 1 7.4547 2.1540 -0.2172 32 1 9.2704 1.9648 1.3590 33 1 9.4002 3.6871 0.8676 34 1 8.9453 5.3035 2.6189 35 1 11.9170 4.5808 2.6732 36 1 7.1993 1.7063 3.5463 37 1 6.3234 3.2607 3.5289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001557186658.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:53 Heat of formation + Delta-G solvation = -25.587771 kcal Electronic energy + Delta-G solvation = -21784.584936 eV Core-core repulsion = 18337.286542 eV Total energy + Delta-G solvation = -3447.298395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.87745 -39.60418 -37.41486 -34.79256 -34.40678 -33.37042 -32.26952 -30.07540 -28.81189 -28.75341 -27.84356 -25.03790 -23.10769 -22.50111 -20.59542 -19.70964 -18.88800 -17.71680 -17.26268 -17.13049 -16.51734 -15.56467 -15.25405 -15.00446 -14.47342 -14.28069 -13.95911 -13.49274 -13.48637 -13.11841 -13.06317 -12.73292 -12.36750 -12.16244 -12.05552 -11.60610 -11.45670 -11.39879 -11.09821 -10.95494 -10.69690 -10.49230 -10.18032 -10.00601 -9.76681 -9.46578 -9.23614 -8.72585 -8.29436 -8.13686 -6.34051 -4.41344 1.44565 2.21555 2.85990 3.00697 3.16232 3.25642 3.30471 3.50715 4.16067 4.23401 4.34242 4.74230 4.93719 4.94267 5.01583 5.16443 5.30840 5.31858 5.44797 5.45345 5.64336 5.68462 5.71676 5.82846 5.92797 6.05842 6.13544 6.37380 6.59860 6.81714 6.87259 7.22766 7.28566 7.68320 7.95510 7.96541 8.27520 8.44876 8.61826 9.24412 9.33615 10.73539 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.042043 B = 0.003479 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.827398 B = 8047.167455 C = 8192.238361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.014 3.986 3 C -0.222 4.222 4 C 0.001 3.999 5 C -0.059 4.059 6 C 0.524 3.476 7 O -0.545 6.545 8 N -0.606 5.606 9 C 0.091 3.909 10 C -0.135 4.135 11 C 0.247 3.753 12 O -0.586 6.586 13 C -0.534 4.534 14 H 0.065 0.935 15 C 0.073 3.927 16 N -0.896 5.896 17 Si 0.903 3.097 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.123 3.877 22 O 0.103 5.897 23 N -0.367 5.367 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.170 0.830 28 H 0.125 0.875 29 H 0.117 0.883 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.383 0.617 35 H 0.268 0.732 36 H 0.073 0.927 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.077 -2.463 -9.660 14.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.145 4.145 3 C -0.244 4.244 4 C -0.063 4.063 5 C -0.100 4.100 6 C 0.311 3.689 7 O -0.424 6.424 8 N -0.339 5.339 9 C -0.032 4.032 10 C -0.174 4.174 11 C 0.206 3.794 12 O -0.394 6.394 13 C -0.573 4.573 14 H 0.083 0.917 15 C -0.130 4.130 16 N -0.535 5.535 17 Si 0.730 3.270 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.207 1.207 21 C 0.002 3.998 22 O 0.037 5.963 23 N -0.072 5.072 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.187 0.813 28 H 0.143 0.857 29 H 0.135 0.865 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.233 0.767 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.186 -4.122 -9.081 15.746 hybrid contribution 1.386 0.849 0.435 1.683 sum -10.799 -3.273 -8.646 14.216 Atomic orbital electron populations 1.20139 0.86068 1.03497 1.03368 1.23536 0.98936 0.88905 1.03117 1.22323 0.91064 1.01073 1.09928 1.23642 0.97198 0.83778 1.01683 1.20134 0.92033 1.00705 0.97126 1.19725 0.80409 0.78638 0.90175 1.90724 1.53675 1.51987 1.45981 1.48666 1.21331 1.53881 1.09981 1.22592 0.91905 0.97812 0.90887 1.23313 0.92840 1.02707 0.98524 1.19468 0.88836 0.79418 0.91632 1.86131 1.40875 1.18840 1.93604 1.21542 0.94137 1.28536 1.13050 0.91695 1.24980 0.98375 0.94185 0.95464 1.69693 1.20119 1.32015 1.31694 0.86358 0.80827 0.78620 0.81175 1.19567 1.20815 1.20748 1.22141 0.95779 0.99268 0.82601 1.84790 1.21584 1.22616 1.67352 1.73804 0.89300 1.24167 1.19971 0.90217 0.90102 0.90719 0.81265 0.85676 0.86458 0.91627 0.91891 0.91310 0.89202 0.76708 0.92241 0.90840 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.47 36.00 0.38 -0.28 16 2 C 0.01 0.18 7.33 -82.10 -0.60 -0.42 16 3 C -0.22 -2.82 11.06 -39.38 -0.44 -3.25 16 4 C 0.00 0.02 5.98 -35.30 -0.21 -0.20 16 5 C -0.06 -0.72 5.27 -29.04 -0.15 -0.87 16 6 C 0.52 9.10 7.85 -10.99 -0.09 9.01 16 7 O -0.55 -11.67 16.37 5.56 0.09 -11.58 16 8 N -0.61 -11.06 3.34 -170.31 -0.57 -11.63 16 9 C 0.09 1.45 6.68 -2.53 -0.02 1.44 16 10 C -0.14 -2.71 5.47 -24.58 -0.13 -2.85 16 11 C 0.25 5.67 0.85 -89.94 -0.08 5.60 16 12 O -0.59 -14.01 13.07 -35.23 -0.46 -14.47 16 13 C -0.53 -13.57 8.22 -34.44 -0.28 -13.85 16 14 H 0.06 1.67 7.58 -52.49 -0.40 1.28 16 15 C 0.07 1.81 5.28 -17.82 -0.09 1.71 16 16 N -0.90 -22.17 10.67 55.43 0.59 -21.58 16 17 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 C 0.12 2.67 6.24 -2.92 -0.02 2.65 16 22 O 0.10 1.60 11.20 17.17 0.19 1.79 16 23 N -0.37 -5.70 12.07 33.42 0.40 -5.30 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.13 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.12 1.15 7.85 -51.93 -0.41 0.74 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.79 7.47 -51.93 -0.39 0.41 16 32 H 0.07 1.43 8.04 -51.92 -0.42 1.01 16 33 H 0.09 1.87 7.53 -51.93 -0.39 1.48 16 34 H 0.38 9.15 7.46 45.56 0.34 9.49 16 35 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 36 H 0.07 1.64 7.67 -51.93 -0.40 1.24 16 37 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 LS Contribution 317.01 15.07 4.78 4.78 Total: -1.00 -30.01 317.01 -5.88 -35.89 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -4.15 Total: 8.58 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -1.73 Total: -1.30 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.43 Total: -38.51 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.18 Total: -24.25 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.01 -5.88 -35.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557186658.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.302 kcal (2) G-P(sol) polarization free energy of solvation -30.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds