Wall clock time and date at job start Tue Mar 31 2020 02:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41377 * 126.80413 * 2 1 4 4 C 1.35450 * 103.98925 * 180.16286 * 3 2 1 5 5 C 1.50698 * 126.78172 * 179.90920 * 4 3 2 6 6 C 1.50698 * 109.47230 * 89.70276 * 5 4 3 7 7 O 1.21280 * 119.99745 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99753 * 179.97438 * 6 5 4 9 9 C 1.47425 * 125.65138 * 0.02907 * 8 6 5 10 10 C 1.54908 * 104.92961 * 204.15299 * 9 8 6 11 11 C 1.55154 * 101.58289 * 322.93718 * 10 9 8 12 12 O 1.42898 * 110.72101 * 277.13570 * 11 10 9 13 13 C 1.50702 * 110.72191 * 154.04150 * 11 10 9 14 14 H 1.07998 * 120.00175 * 241.45665 * 13 11 10 15 15 C 1.37877 * 119.99903 * 61.45166 * 13 11 10 16 16 N 1.31513 * 120.00008 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99938 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47136 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46999 * 120.00414 * 17 15 13 20 20 H 1.48499 * 109.46864 * 240.00057 * 17 15 13 21 21 C 1.47290 * 125.79121 * 180.02562 * 8 6 5 22 22 O 1.34043 * 106.44098 * 359.64183 * 4 3 2 23 23 N 1.20918 * 111.57187 * 0.24465 * 22 4 3 24 24 H 1.09004 * 109.47920 * 270.26322 * 1 2 3 25 25 H 1.09010 * 109.47050 * 30.26183 * 1 2 3 26 26 H 1.09000 * 109.47675 * 150.25971 * 1 2 3 27 27 H 1.07997 * 128.00826 * 0.06194 * 3 2 1 28 28 H 1.09001 * 109.46865 * 329.70266 * 5 4 3 29 29 H 1.09000 * 109.47039 * 209.70806 * 5 4 3 30 30 H 1.09002 * 110.36696 * 85.25946 * 9 8 6 31 31 H 1.08995 * 110.36608 * 323.04783 * 9 8 6 32 32 H 1.09008 * 111.00494 * 81.01141 * 10 9 8 33 33 H 1.08999 * 111.00647 * 204.85975 * 10 9 8 34 34 H 0.96703 * 114.00272 * 298.55255 * 12 11 10 35 35 H 0.97000 * 119.99926 * 180.02562 * 16 15 13 36 36 H 1.09004 * 109.85762 * 59.50172 * 21 8 6 37 37 H 1.08995 * 110.00297 * 298.43119 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6068 -0.0037 5 6 4.9022 1.3694 -0.0073 6 6 5.3358 1.6297 1.4123 7 8 4.6566 1.2343 2.3359 8 7 6.4790 2.3009 1.6553 9 6 7.3961 2.8349 0.6320 10 6 8.7704 2.9333 1.3400 11 6 8.3540 3.3724 2.7687 12 8 8.1547 4.7863 2.8252 13 6 9.3837 2.9402 3.7807 14 1 9.1101 2.2581 4.5720 15 6 10.6752 3.4156 3.6962 16 7 11.0083 4.2466 2.7328 17 14 11.9517 2.8794 4.9501 18 1 11.3282 1.9474 5.9237 19 1 13.0704 2.1932 4.2552 20 1 12.4714 4.0710 5.6679 21 6 7.0219 2.6242 2.9858 22 8 3.4537 -0.7254 0.0024 23 7 2.2868 -1.0424 0.0043 24 1 -0.3635 0.0047 1.0276 25 1 -0.3634 0.8877 -0.5179 26 1 -0.3634 -0.8923 -0.5098 27 1 2.0710 2.1742 0.0009 28 1 4.7649 2.3187 -0.5251 29 1 5.6658 0.7836 -0.5190 30 1 7.0665 3.8209 0.3046 31 1 7.4547 2.1540 -0.2172 32 1 9.2704 1.9648 1.3590 33 1 9.4002 3.6871 0.8676 34 1 8.9453 5.3035 2.6189 35 1 11.9170 4.5808 2.6732 36 1 7.1993 1.7063 3.5463 37 1 6.3234 3.2607 3.5289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001557186658.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:52 Heat of formation + Delta-G solvation = -46.822587 kcal Electronic energy + Delta-G solvation = -21785.505747 eV Core-core repulsion = 18337.286542 eV Total energy + Delta-G solvation = -3448.219205 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.89129 -41.06810 -39.03369 -36.09542 -35.73574 -34.43304 -34.19484 -31.61906 -30.24523 -29.57369 -29.20333 -26.79732 -24.18238 -23.91315 -21.90037 -21.19747 -20.19075 -19.17668 -18.76143 -18.20490 -17.87678 -16.99143 -16.86928 -16.56689 -16.00403 -15.55350 -15.29132 -14.77986 -14.59548 -14.19450 -14.01141 -13.89937 -13.84522 -13.40758 -13.32227 -13.21077 -13.11244 -13.04498 -12.66325 -12.41125 -12.26329 -12.03644 -11.94931 -11.27246 -11.11863 -10.94719 -10.63730 -10.35249 -10.11998 -9.64184 -8.24505 -6.37949 0.41003 1.25386 1.39914 1.45077 1.54184 1.55053 1.91749 2.25220 2.40797 3.01245 3.30049 3.40182 3.55310 3.87792 4.01831 4.04137 4.13824 4.30932 4.34568 4.47104 4.53926 4.59492 4.62129 4.68604 4.73825 4.90606 4.91701 4.95917 5.20563 5.23887 5.26379 5.49737 5.58648 5.78634 6.09613 6.56376 6.66101 7.07063 7.26653 7.32382 7.42526 8.81311 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.042043 B = 0.003479 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.827398 B = 8047.167455 C = 8192.238361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.009 3.991 3 C -0.223 4.223 4 C -0.014 4.014 5 C -0.045 4.045 6 C 0.521 3.479 7 O -0.593 6.593 8 N -0.607 5.607 9 C 0.099 3.901 10 C -0.128 4.128 11 C 0.234 3.766 12 O -0.592 6.592 13 C -0.563 4.563 14 H 0.047 0.953 15 C 0.040 3.960 16 N -0.902 5.902 17 Si 0.955 3.045 18 H -0.279 1.279 19 H -0.275 1.275 20 H -0.278 1.278 21 C 0.129 3.871 22 O 0.077 5.923 23 N -0.401 5.401 24 H 0.085 0.915 25 H 0.108 0.892 26 H 0.079 0.921 27 H 0.197 0.803 28 H 0.167 0.833 29 H 0.147 0.853 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.380 0.620 35 H 0.272 0.728 36 H 0.054 0.946 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.557 -1.937 -11.651 16.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.149 4.149 3 C -0.244 4.244 4 C -0.078 4.078 5 C -0.085 4.085 6 C 0.311 3.689 7 O -0.475 6.475 8 N -0.340 5.340 9 C -0.022 4.022 10 C -0.167 4.167 11 C 0.195 3.805 12 O -0.401 6.401 13 C -0.602 4.602 14 H 0.065 0.935 15 C -0.162 4.162 16 N -0.541 5.541 17 Si 0.781 3.219 18 H -0.204 1.204 19 H -0.200 1.200 20 H -0.204 1.204 21 C 0.006 3.994 22 O 0.015 5.985 23 N -0.109 5.109 24 H 0.103 0.897 25 H 0.126 0.874 26 H 0.098 0.902 27 H 0.214 0.786 28 H 0.185 0.815 29 H 0.165 0.835 30 H 0.100 0.900 31 H 0.129 0.871 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.230 0.770 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.640 -3.585 -11.107 17.204 hybrid contribution 1.496 0.708 1.111 1.994 sum -11.145 -2.877 -9.995 15.244 Atomic orbital electron populations 1.20328 0.83442 1.05150 1.04185 1.24269 1.00736 0.88571 1.01359 1.22783 0.90616 1.02237 1.08774 1.24065 0.98403 0.83405 1.01954 1.20242 0.92021 1.02953 0.93303 1.20682 0.79191 0.76977 0.92079 1.90706 1.54977 1.53630 1.48181 1.48699 1.22140 1.54271 1.08862 1.22676 0.88587 1.00046 0.90890 1.23092 0.95160 1.01504 0.96933 1.19582 0.88979 0.78891 0.93096 1.86114 1.40712 1.19447 1.93805 1.21747 0.95536 1.29105 1.13784 0.93502 1.25515 0.99506 0.94265 0.96879 1.69734 1.20541 1.31816 1.31993 0.85558 0.78934 0.78114 0.79279 1.20397 1.20020 1.20413 1.21801 0.95070 0.97866 0.84622 1.84740 1.21834 1.23722 1.68223 1.73800 0.89691 1.25613 1.21837 0.89673 0.87385 0.90176 0.78623 0.81516 0.83476 0.89957 0.87071 0.92507 0.89980 0.76997 0.91880 0.92730 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.47 71.23 0.75 -0.41 16 2 C 0.01 0.23 7.33 43.58 0.32 0.55 16 3 C -0.22 -5.11 11.06 22.40 0.25 -4.86 16 4 C -0.01 -0.37 5.98 25.04 0.15 -0.22 16 5 C -0.05 -0.93 5.27 29.10 0.15 -0.78 16 6 C 0.52 17.20 7.85 87.66 0.69 17.88 16 7 O -0.59 -25.41 16.37 -3.03 -0.05 -25.46 16 8 N -0.61 -21.27 3.34 -811.12 -2.71 -23.98 16 9 C 0.10 2.87 6.68 86.85 0.58 3.45 16 10 C -0.13 -5.01 5.47 31.98 0.17 -4.83 16 11 C 0.23 10.88 0.85 -10.35 -0.01 10.87 16 12 O -0.59 -28.50 13.07 -148.98 -1.95 -30.44 16 13 C -0.56 -29.26 8.22 25.60 0.21 -29.05 16 14 H 0.05 2.52 7.58 -2.91 -0.02 2.50 16 15 C 0.04 2.01 5.28 84.65 0.45 2.45 16 16 N -0.90 -44.28 10.67 21.45 0.23 -44.05 16 17 Si 0.95 40.75 29.54 68.60 2.03 42.77 16 18 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 21 C 0.13 5.71 6.24 86.68 0.54 6.25 16 22 O 0.08 2.36 11.20 71.61 0.80 3.16 16 23 N -0.40 -12.23 12.07 -49.57 -0.60 -12.83 16 24 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.20 3.22 8.06 -2.91 -0.02 3.19 16 28 H 0.17 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.15 2.19 7.85 -2.39 -0.02 2.17 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.11 2.21 7.47 -2.39 -0.02 2.19 16 32 H 0.06 2.32 8.04 -2.38 -0.02 2.30 16 33 H 0.08 3.33 7.53 -2.39 -0.02 3.31 16 34 H 0.38 18.27 7.46 -74.06 -0.55 17.72 16 35 H 0.27 12.68 8.31 -92.71 -0.77 11.91 16 36 H 0.05 2.56 7.67 -2.38 -0.02 2.54 16 37 H 0.04 2.02 8.07 -2.39 -0.02 2.00 16 Total: -1.00 -67.65 317.01 2.55 -65.11 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.54 Total: 24.39 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 4.25 Total: 1.32 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -3.07 Total: -80.85 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -1.19 Total: -52.74 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Total: -67.65 2.55 -65.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557186658.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.283 kcal (2) G-P(sol) polarization free energy of solvation -67.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds