Wall clock time and date at job start Tue Mar 31 2020 01:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99972 * 2 1 4 4 H 1.48498 * 109.46984 * 269.99569 * 3 2 1 5 5 H 1.48493 * 109.47102 * 29.99667 * 3 2 1 6 6 H 1.48498 * 109.46647 * 149.99645 * 3 2 1 7 7 C 1.38814 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99957 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00036 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99833 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.90889 * 336.24746 * 10 9 7 12 12 C 1.53784 * 113.61524 * 107.50104 * 10 9 7 13 13 C 1.53778 * 87.08081 * 139.98080 * 12 10 9 14 14 H 1.08999 * 113.69218 * 89.12660 * 13 12 10 15 15 C 1.53001 * 113.61526 * 220.01868 * 13 12 10 16 16 N 1.46505 * 109.47164 * 272.50042 * 15 13 12 17 17 C 1.34773 * 119.99613 * 179.97438 * 16 15 13 18 18 O 1.21279 * 120.00338 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99666 * 179.97438 * 17 16 15 20 20 C 1.53005 * 109.46961 * 180.02562 * 19 17 16 21 21 F 1.39899 * 109.46985 * 60.00456 * 20 19 17 22 22 F 1.39898 * 109.46790 * 180.02562 * 20 19 17 23 23 F 1.39900 * 109.47230 * 300.00234 * 20 19 17 24 24 C 1.53778 * 87.08449 * 334.56700 * 13 12 10 25 25 H 0.96998 * 120.00014 * 0.02562 * 1 2 3 26 26 H 0.96998 * 119.99790 * 359.97438 * 9 7 2 27 27 H 1.08993 * 113.61313 * 254.52676 * 12 10 9 28 28 H 1.09000 * 113.61578 * 25.43408 * 12 10 9 29 29 H 1.09008 * 109.46870 * 32.49758 * 15 13 12 30 30 H 1.09000 * 109.47055 * 152.49586 * 15 13 12 31 31 H 0.96988 * 119.99988 * 359.97438 * 16 15 13 32 32 H 1.08999 * 109.47232 * 300.00154 * 19 17 16 33 33 H 1.09000 * 109.47100 * 60.00384 * 19 17 16 34 34 H 1.08998 * 113.61879 * 270.88747 * 24 13 12 35 35 H 1.08999 * 113.61887 * 139.97854 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0660 -3.5647 -0.4039 12 6 1.9990 -4.4022 1.3444 13 6 1.8479 -5.6976 0.5296 14 1 2.7977 -6.1646 0.2693 15 6 0.8448 -6.6852 1.1291 16 7 1.5260 -7.5432 2.1018 17 6 0.8357 -8.4949 2.7606 18 8 -0.3493 -8.6414 2.5480 19 6 1.5365 -9.3778 3.7608 20 6 0.5333 -10.3654 4.3604 21 9 -0.0097 -11.1550 3.3412 22 9 1.1838 -11.1846 5.2892 23 9 -0.4914 -9.6591 4.9993 24 6 1.2600 -4.8289 -0.5949 25 1 -0.4850 0.8400 -0.0004 26 1 0.3555 -2.3880 0.0005 27 1 2.9271 -4.3502 1.9135 28 1 1.1208 -4.1570 1.9415 29 1 0.0461 -6.1349 1.6266 30 1 0.4220 -7.3006 0.3350 31 1 2.4737 -7.4263 2.2716 32 1 2.3346 -9.9285 3.2629 33 1 1.9600 -8.7626 4.5547 34 1 0.1797 -4.7002 -0.5280 35 1 1.5915 -5.1212 -1.5912 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565838405.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:17 Heat of formation + Delta-G solvation = -191.658091 kcal Electronic energy + Delta-G solvation = -21429.892295 eV Core-core repulsion = 17433.535810 eV Total energy + Delta-G solvation = -3996.356484 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.06177 -48.58500 -48.53730 -40.95628 -39.78524 -36.10003 -35.05273 -33.00883 -32.05087 -28.68121 -26.43471 -25.95194 -24.82679 -22.46121 -21.83297 -20.51813 -19.69503 -19.53582 -19.02451 -18.60653 -17.68312 -17.02846 -16.70336 -16.46349 -16.04214 -15.53396 -15.41670 -15.35527 -15.05056 -14.94741 -14.72043 -14.67513 -14.61779 -14.46007 -13.52363 -13.33090 -13.21330 -12.99431 -12.96331 -12.90669 -12.64865 -12.18238 -12.06880 -11.62360 -11.54245 -11.18721 -10.97612 -10.79360 -10.13679 -8.96600 -7.93898 -5.22173 1.45481 1.48105 1.49697 1.57730 1.58151 2.11402 2.57531 2.75177 3.08665 3.16091 3.38499 3.69254 3.76964 3.81000 3.96729 4.19687 4.28165 4.30082 4.37274 4.44154 4.57950 4.78634 4.99486 5.01354 5.07489 5.24271 5.34136 5.42907 5.53898 5.75729 6.28651 6.42847 7.12706 7.33966 8.13058 8.33957 9.29765 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.041089 B = 0.002662 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.292226 B =10514.800862 C =10639.717763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.973 3.027 4 H -0.288 1.288 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.241 4.241 8 H 0.080 0.920 9 N -0.732 5.732 10 C 0.141 3.859 11 H 0.082 0.918 12 C -0.153 4.153 13 C -0.092 4.092 14 H 0.127 0.873 15 C 0.137 3.863 16 N -0.702 5.702 17 C 0.508 3.492 18 O -0.578 6.578 19 C -0.181 4.181 20 C 0.463 3.537 21 F -0.190 7.190 22 F -0.179 7.179 23 F -0.193 7.193 24 C -0.140 4.140 25 H 0.250 0.750 26 H 0.371 0.629 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.423 0.577 32 H 0.180 0.820 33 H 0.174 0.826 34 H 0.064 0.936 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.182 -22.703 7.447 25.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.802 3.198 4 H -0.215 1.215 5 H -0.226 1.226 6 H -0.191 1.191 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.369 5.369 10 C 0.031 3.969 11 H 0.100 0.900 12 C -0.194 4.194 13 C -0.111 4.111 14 H 0.145 0.855 15 C 0.013 3.987 16 N -0.354 5.354 17 C 0.294 3.706 18 O -0.458 6.458 19 C -0.221 4.221 20 C 0.409 3.591 21 F -0.172 7.172 22 F -0.160 7.160 23 F -0.174 7.174 24 C -0.179 4.179 25 H 0.059 0.941 26 H 0.203 0.797 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.261 0.739 32 H 0.198 0.802 33 H 0.192 0.808 34 H 0.083 0.917 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.488 -22.669 7.291 25.281 hybrid contribution -0.347 1.114 0.162 1.178 sum 8.141 -21.555 7.454 24.217 Atomic orbital electron populations 1.69827 1.06764 1.25995 1.59842 1.25605 0.96348 1.01288 1.04033 0.85142 0.77775 0.79499 0.77385 1.21481 1.22598 1.19099 1.19744 0.91634 0.85363 1.40547 0.90171 1.42661 1.05364 1.01340 1.87537 1.21996 0.95651 0.83784 0.95432 0.89999 1.23724 1.01173 0.96039 0.98444 1.22470 0.99530 0.92855 0.96288 0.85482 1.21261 0.94897 0.91541 0.91025 1.45714 1.14177 1.33922 1.41630 1.20436 0.86935 0.81365 0.81875 1.90831 1.17367 1.71011 1.66581 1.23043 0.98643 0.98102 1.02290 1.20244 0.81533 0.81220 0.76144 1.93191 1.87597 1.76410 1.59978 1.93207 1.80804 1.74663 1.67353 1.93196 1.62830 1.78544 1.82879 1.23349 0.99859 0.96082 0.98633 0.94145 0.79728 0.90996 0.92764 0.93545 0.91504 0.73917 0.80238 0.80835 0.91740 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.90 13.06 21.65 0.28 -59.62 16 2 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 3 Si 0.97 45.61 29.55 68.60 2.03 47.64 16 4 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.24 -13.10 9.97 84.03 0.84 -12.26 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.73 -36.09 5.40 -320.43 -1.73 -37.82 16 10 C 0.14 5.03 4.48 45.52 0.20 5.24 16 11 H 0.08 2.81 8.10 -2.39 -0.02 2.79 16 12 C -0.15 -4.43 7.43 31.12 0.23 -4.20 16 13 C -0.09 -1.94 3.75 -10.27 -0.04 -1.98 16 14 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 15 C 0.14 2.96 5.51 86.38 0.48 3.43 16 16 N -0.70 -10.65 5.56 -463.04 -2.57 -13.22 16 17 C 0.51 9.56 7.60 87.66 0.67 10.22 16 18 O -0.58 -17.52 14.83 -3.03 -0.04 -17.56 16 19 C -0.18 -1.64 5.75 29.85 0.17 -1.46 16 20 C 0.46 8.02 2.89 71.98 0.21 8.23 16 21 F -0.19 -4.26 16.40 44.97 0.74 -3.52 16 22 F -0.18 -2.72 17.32 44.97 0.78 -1.94 16 23 F -0.19 -4.57 16.40 44.97 0.74 -3.83 16 24 C -0.14 -4.00 7.39 31.12 0.23 -3.77 16 25 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 26 H 0.37 20.06 7.92 -92.71 -0.73 19.32 16 27 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.05 1.86 7.90 -2.39 -0.02 1.84 16 29 H 0.05 1.28 7.84 -2.38 -0.02 1.26 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.42 3.07 8.47 -92.72 -0.79 2.29 16 32 H 0.18 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.17 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -75.45 313.42 3.28 -72.17 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -0.39 Total: 18.41 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 3.45 Total: -0.69 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -4.02 Total: -110.66 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.04 Total: -17.56 kcal Atomic # 9 Polarization: -11.55 SS G_CDS: 2.25 Total: -9.29 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -75.45 3.28 -72.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565838405.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.490 kcal (2) G-P(sol) polarization free energy of solvation -75.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds