Wall clock time and date at job start Tue Mar 31 2020 01:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00267 * 2 1 4 4 H 1.48507 * 109.47074 * 269.99800 * 3 2 1 5 5 H 1.48495 * 109.47578 * 29.99707 * 3 2 1 6 6 H 1.48506 * 109.47365 * 150.00441 * 3 2 1 7 7 C 1.38816 * 119.99589 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99969 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00276 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00049 * 180.02562 * 9 7 2 11 11 H 1.09004 * 112.91032 * 23.75193 * 10 9 7 12 12 C 1.53784 * 113.61434 * 155.00183 * 10 9 7 13 13 C 1.53787 * 87.07923 * 89.11404 * 12 10 9 14 14 H 1.09000 * 113.61529 * 270.88430 * 13 12 10 15 15 C 1.53005 * 113.61178 * 140.06478 * 13 12 10 16 16 N 1.46499 * 109.46872 * 174.99760 * 15 13 12 17 17 C 1.34777 * 119.99733 * 179.97438 * 16 15 13 18 18 O 1.21287 * 120.00184 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99915 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.47177 * 180.02562 * 19 17 16 21 21 F 1.39899 * 109.47448 * 59.99662 * 20 19 17 22 22 F 1.39894 * 109.47395 * 180.02562 * 20 19 17 23 23 F 1.39901 * 109.46988 * 299.99920 * 20 19 17 24 24 C 1.53779 * 113.61357 * 252.49785 * 10 9 7 25 25 H 0.97004 * 119.99594 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99676 * 0.02562 * 9 7 2 27 27 H 1.09004 * 113.61451 * 334.56890 * 12 10 9 28 28 H 1.08994 * 113.61477 * 203.66192 * 12 10 9 29 29 H 1.08995 * 109.46809 * 295.00307 * 15 13 12 30 30 H 1.09006 * 109.46737 * 54.99803 * 15 13 12 31 31 H 0.96993 * 120.00253 * 0.02562 * 16 15 13 32 32 H 1.09002 * 109.46901 * 300.00118 * 19 17 16 33 33 H 1.08993 * 109.47219 * 60.00516 * 19 17 16 34 34 H 1.09006 * 113.61307 * 156.33848 * 24 10 9 35 35 H 1.09007 * 113.61642 * 25.43606 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6569 0.0027 11 1 3.0660 -3.5645 0.4071 12 6 1.2599 -4.8283 0.5992 13 6 0.7202 -5.0798 -0.8187 14 1 -0.1904 -4.5248 -1.0441 15 6 0.6174 -6.5627 -1.1812 16 7 -0.0144 -6.7014 -2.4957 17 6 -0.2097 -7.9259 -3.0237 18 8 0.1371 -8.9132 -2.4103 19 6 -0.8591 -8.0685 -4.3760 20 6 -0.9620 -9.5514 -4.7385 21 9 -1.7342 -10.2138 -3.7783 22 9 -1.5643 -9.6838 -5.9942 23 9 0.3190 -10.1126 -4.7748 24 6 1.9989 -4.4034 -1.3404 25 1 -0.4850 0.8401 -0.0004 26 1 0.3555 -2.3880 0.0016 27 1 0.4935 -4.5178 1.3094 28 1 1.8867 -5.6359 0.9774 29 1 1.6155 -6.9998 -1.2098 30 1 0.0161 -7.0789 -0.4328 31 1 -0.2914 -5.9119 -2.9864 32 1 -1.8573 -7.6317 -4.3476 33 1 -0.2576 -7.5523 -5.1241 34 1 2.8278 -5.0949 -1.4924 35 1 1.8292 -3.7499 -2.1962 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565860608.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:20 Heat of formation + Delta-G solvation = -167.293193 kcal Electronic energy + Delta-G solvation = -21538.511933 eV Core-core repulsion = 17543.211990 eV Total energy + Delta-G solvation = -3995.299943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.28793 -47.83235 -47.69831 -40.01273 -38.59910 -34.86381 -33.32785 -32.22289 -30.18346 -27.50329 -25.13751 -24.39849 -23.58249 -21.80751 -20.92165 -19.04545 -18.76174 -18.40843 -17.87680 -17.31319 -16.79297 -15.91829 -15.77429 -14.99587 -14.69156 -14.61480 -14.28063 -14.16238 -14.13625 -13.88981 -13.85738 -13.66147 -13.56933 -12.96498 -12.77339 -12.33732 -12.24443 -11.99179 -11.48045 -11.10785 -10.89008 -10.58102 -10.41277 -10.21484 -9.94472 -9.75278 -9.57013 -9.19428 -8.94554 -7.06452 -5.86541 -3.15772 2.25424 2.29067 2.88586 3.37873 3.43682 3.43819 3.45117 3.77138 3.89972 4.47675 4.50816 4.68852 4.73955 4.95406 4.97434 5.14731 5.39282 5.52476 5.61395 5.77263 5.86446 6.00819 6.14057 6.21479 6.30295 6.50997 6.66590 6.81356 6.96707 7.19867 7.63803 7.87287 8.32679 9.43499 10.00415 10.34556 11.35854 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.036589 B = 0.002815 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.077359 B = 9944.189269 C =10262.422607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.167 3.833 11 H 0.063 0.937 12 C -0.148 4.148 13 C -0.120 4.120 14 H 0.094 0.906 15 C 0.130 3.870 16 N -0.715 5.715 17 C 0.514 3.486 18 O -0.527 6.527 19 C -0.198 4.198 20 C 0.473 3.527 21 F -0.174 7.174 22 F -0.184 7.184 23 F -0.174 7.174 24 C -0.169 4.169 25 H 0.256 0.744 26 H 0.385 0.615 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.406 0.594 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.068 0.932 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.552 -16.378 -9.312 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.188 4.188 13 C -0.139 4.139 14 H 0.112 0.888 15 C 0.008 3.992 16 N -0.366 5.366 17 C 0.298 3.702 18 O -0.403 6.403 19 C -0.239 4.239 20 C 0.418 3.582 21 F -0.155 7.155 22 F -0.165 7.165 23 F -0.155 7.155 24 C -0.210 4.210 25 H 0.066 0.934 26 H 0.219 0.781 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.240 0.760 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.087 0.913 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.177 -16.936 -8.825 19.221 hybrid contribution -0.146 1.133 -0.470 1.236 sum -2.323 -15.802 -9.295 18.480 Atomic orbital electron populations 1.69659 1.05152 1.25841 1.57409 1.24765 0.95548 0.97818 1.02694 0.86166 0.78695 0.83623 0.77553 1.21657 1.21730 1.20666 1.19293 0.91141 0.83956 1.43073 0.90971 1.42171 1.05675 0.99447 1.87149 1.21053 0.95168 0.85586 0.92721 0.91904 1.23453 1.00534 0.99744 0.95030 1.22729 0.99674 0.92685 0.98819 0.88793 1.21570 0.97763 0.97332 0.82575 1.45944 1.61804 1.07490 1.21402 1.19749 0.79718 0.84290 0.86461 1.90825 1.50461 1.37199 1.61818 1.22988 1.07754 0.93232 0.99918 1.19712 0.74237 0.89967 0.74276 1.93225 1.75405 1.83175 1.63684 1.93199 1.83926 1.96729 1.42686 1.93226 1.38915 1.87265 1.96086 1.23905 0.95605 0.99655 1.01843 0.93408 0.78117 0.91249 0.90390 0.91224 0.91466 0.75967 0.84312 0.84298 0.91346 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.16 13.06 55.49 0.72 -26.43 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 21.70 29.55 -169.99 -5.02 16.67 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.24 -6.51 9.97 -15.06 -0.15 -6.66 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -16.76 5.31 -52.63 -0.28 -17.04 16 10 C 0.17 3.10 4.56 -67.12 -0.31 2.79 16 11 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 12 C -0.15 -2.23 7.39 -25.91 -0.19 -2.42 16 13 C -0.12 -1.63 3.63 -89.80 -0.33 -1.96 16 14 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 15 C 0.13 1.56 5.51 -4.04 -0.02 1.54 16 16 N -0.72 -7.23 5.56 -60.29 -0.33 -7.57 16 17 C 0.51 5.65 7.60 -10.99 -0.08 5.57 16 18 O -0.53 -8.03 14.83 5.55 0.08 -7.95 16 19 C -0.20 -1.40 5.75 -27.89 -0.16 -1.56 16 20 C 0.47 4.66 2.89 37.16 0.11 4.77 16 21 F -0.17 -2.07 16.40 2.25 0.04 -2.03 16 22 F -0.18 -1.68 17.32 2.25 0.04 -1.64 16 23 F -0.17 -2.08 16.40 2.25 0.04 -2.04 16 24 C -0.17 -2.60 7.43 -25.92 -0.19 -2.79 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 26 H 0.38 9.64 7.90 -40.82 -0.32 9.32 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 29 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.41 3.22 8.47 -40.82 -0.35 2.87 16 32 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.14 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.95 7.90 -51.93 -0.41 0.54 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 313.29 15.07 4.72 4.72 Total: -1.00 -31.85 313.29 -5.83 -37.68 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.41 Total: 6.78 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -1.42 Total: -1.16 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.11 Total: -51.04 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.08 Total: -7.95 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 0.11 Total: -5.71 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.85 -5.83 -37.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565860608.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.611 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds