Wall clock time and date at job start Tue Mar 31 2020 01:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00267 * 2 1 4 4 H 1.48507 * 109.47074 * 269.99800 * 3 2 1 5 5 H 1.48495 * 109.47578 * 29.99707 * 3 2 1 6 6 H 1.48506 * 109.47365 * 150.00441 * 3 2 1 7 7 C 1.38816 * 119.99589 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99969 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00276 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00049 * 180.02562 * 9 7 2 11 11 H 1.09004 * 112.91032 * 23.75193 * 10 9 7 12 12 C 1.53784 * 113.61434 * 155.00183 * 10 9 7 13 13 C 1.53787 * 87.07923 * 89.11404 * 12 10 9 14 14 H 1.09000 * 113.61529 * 270.88430 * 13 12 10 15 15 C 1.53005 * 113.61178 * 140.06478 * 13 12 10 16 16 N 1.46499 * 109.46872 * 174.99760 * 15 13 12 17 17 C 1.34777 * 119.99733 * 179.97438 * 16 15 13 18 18 O 1.21287 * 120.00184 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99915 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.47177 * 180.02562 * 19 17 16 21 21 F 1.39899 * 109.47448 * 59.99662 * 20 19 17 22 22 F 1.39894 * 109.47395 * 180.02562 * 20 19 17 23 23 F 1.39901 * 109.46988 * 299.99920 * 20 19 17 24 24 C 1.53779 * 113.61357 * 252.49785 * 10 9 7 25 25 H 0.97004 * 119.99594 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99676 * 0.02562 * 9 7 2 27 27 H 1.09004 * 113.61451 * 334.56890 * 12 10 9 28 28 H 1.08994 * 113.61477 * 203.66192 * 12 10 9 29 29 H 1.08995 * 109.46809 * 295.00307 * 15 13 12 30 30 H 1.09006 * 109.46737 * 54.99803 * 15 13 12 31 31 H 0.96993 * 120.00253 * 0.02562 * 16 15 13 32 32 H 1.09002 * 109.46901 * 300.00118 * 19 17 16 33 33 H 1.08993 * 109.47219 * 60.00516 * 19 17 16 34 34 H 1.09006 * 113.61307 * 156.33848 * 24 10 9 35 35 H 1.09007 * 113.61642 * 25.43606 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6569 0.0027 11 1 3.0660 -3.5645 0.4071 12 6 1.2599 -4.8283 0.5992 13 6 0.7202 -5.0798 -0.8187 14 1 -0.1904 -4.5248 -1.0441 15 6 0.6174 -6.5627 -1.1812 16 7 -0.0144 -6.7014 -2.4957 17 6 -0.2097 -7.9259 -3.0237 18 8 0.1371 -8.9132 -2.4103 19 6 -0.8591 -8.0685 -4.3760 20 6 -0.9620 -9.5514 -4.7385 21 9 -1.7342 -10.2138 -3.7783 22 9 -1.5643 -9.6838 -5.9942 23 9 0.3190 -10.1126 -4.7748 24 6 1.9989 -4.4034 -1.3404 25 1 -0.4850 0.8401 -0.0004 26 1 0.3555 -2.3880 0.0016 27 1 0.4935 -4.5178 1.3094 28 1 1.8867 -5.6359 0.9774 29 1 1.6155 -6.9998 -1.2098 30 1 0.0161 -7.0789 -0.4328 31 1 -0.2914 -5.9119 -2.9864 32 1 -1.8573 -7.6317 -4.3476 33 1 -0.2576 -7.5523 -5.1241 34 1 2.8278 -5.0949 -1.4924 35 1 1.8292 -3.7499 -2.1962 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565860608.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:20 Heat of formation + Delta-G solvation = -189.298558 kcal Electronic energy + Delta-G solvation = -21539.466157 eV Core-core repulsion = 17543.211990 eV Total energy + Delta-G solvation = -3996.254167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.06758 -48.59074 -48.53728 -40.96858 -39.86258 -36.05962 -34.99333 -33.01021 -31.93810 -28.70592 -26.41667 -25.82683 -24.88504 -23.04739 -21.77851 -20.02081 -19.56657 -19.53849 -19.32379 -18.57383 -17.67198 -16.90752 -16.67286 -16.58311 -15.84708 -15.63907 -15.41327 -15.39439 -14.97070 -14.83435 -14.71540 -14.70530 -14.63738 -14.56493 -13.83003 -13.42843 -13.23715 -12.97401 -12.92576 -12.89399 -12.61013 -12.16037 -12.05967 -11.59065 -11.46739 -11.17364 -10.90612 -10.77220 -10.12895 -8.98665 -7.94817 -5.22667 1.44454 1.49487 1.49997 1.57139 1.58554 2.11807 2.56648 2.74260 3.08061 3.15312 3.38269 3.70331 3.75763 3.80872 3.93317 4.16640 4.18082 4.29336 4.34691 4.42469 4.73974 4.78460 4.95275 5.01881 5.12730 5.26277 5.36726 5.47786 5.55474 5.68233 6.29289 6.40194 7.07977 7.34556 8.11857 8.34008 9.28371 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.036589 B = 0.002815 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.077359 B = 9944.189269 C =10262.422607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.971 3.029 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.242 4.242 8 H 0.075 0.925 9 N -0.720 5.720 10 C 0.141 3.859 11 H 0.057 0.943 12 C -0.137 4.137 13 C -0.101 4.101 14 H 0.086 0.914 15 C 0.139 3.861 16 N -0.708 5.708 17 C 0.512 3.488 18 O -0.574 6.574 19 C -0.185 4.185 20 C 0.466 3.534 21 F -0.190 7.190 22 F -0.179 7.179 23 F -0.190 7.190 24 C -0.152 4.152 25 H 0.251 0.749 26 H 0.375 0.625 27 H 0.057 0.943 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.418 0.582 32 H 0.173 0.827 33 H 0.173 0.827 34 H 0.091 0.909 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.116 -16.737 -10.269 19.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.800 3.200 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.196 1.196 7 C -0.374 4.374 8 H 0.093 0.907 9 N -0.358 5.358 10 C 0.031 3.969 11 H 0.076 0.924 12 C -0.176 4.176 13 C -0.119 4.119 14 H 0.104 0.896 15 C 0.016 3.984 16 N -0.359 5.359 17 C 0.297 3.703 18 O -0.453 6.453 19 C -0.225 4.225 20 C 0.411 3.589 21 F -0.171 7.171 22 F -0.161 7.161 23 F -0.171 7.171 24 C -0.193 4.193 25 H 0.060 0.940 26 H 0.207 0.793 27 H 0.076 0.924 28 H 0.122 0.878 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.255 0.745 32 H 0.191 0.809 33 H 0.191 0.809 34 H 0.109 0.891 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.711 -17.316 -9.803 19.971 hybrid contribution -0.237 1.157 -0.166 1.192 sum -1.947 -16.159 -9.969 19.086 Atomic orbital electron populations 1.69801 1.06495 1.26053 1.59508 1.25513 0.96362 1.00933 1.03773 0.85180 0.77711 0.79693 0.77420 1.21378 1.22391 1.19590 1.19661 0.91501 0.85229 1.41036 0.90659 1.42294 1.05349 1.00523 1.87655 1.21398 0.95002 0.84932 0.95528 0.92449 1.23363 0.99994 0.98636 0.95623 1.22492 0.98457 0.93628 0.97352 0.89620 1.21335 0.97953 0.95561 0.83582 1.45837 1.61259 1.08033 1.20786 1.20323 0.78943 0.83538 0.87448 1.90812 1.52505 1.38639 1.63394 1.23048 1.09948 0.91429 0.98091 1.20148 0.73394 0.91178 0.74133 1.93192 1.75765 1.83779 1.64399 1.93206 1.83761 1.96796 1.42311 1.93192 1.40028 1.87758 1.96150 1.23708 0.97320 0.99189 0.99075 0.94016 0.79271 0.92434 0.87788 0.91280 0.91725 0.74468 0.80909 0.80898 0.89064 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.15 13.06 21.65 0.28 -56.87 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 3 Si 0.97 44.73 29.55 68.60 2.03 46.76 16 4 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.24 -12.96 9.97 84.03 0.84 -12.12 16 8 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.72 -34.26 5.31 -320.44 -1.70 -35.96 16 10 C 0.14 5.11 4.56 45.52 0.21 5.32 16 11 H 0.06 2.11 8.10 -2.39 -0.02 2.09 16 12 C -0.14 -3.90 7.39 31.12 0.23 -3.67 16 13 C -0.10 -2.54 3.63 -10.26 -0.04 -2.58 16 14 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 15 C 0.14 3.01 5.51 86.38 0.48 3.49 16 16 N -0.71 -12.48 5.56 -463.05 -2.57 -15.05 16 17 C 0.51 10.10 7.60 87.66 0.67 10.76 16 18 O -0.57 -16.86 14.83 -3.05 -0.05 -16.91 16 19 C -0.19 -2.03 5.75 29.85 0.17 -1.86 16 20 C 0.47 8.38 2.89 71.98 0.21 8.59 16 21 F -0.19 -4.37 16.40 44.97 0.74 -3.63 16 22 F -0.18 -2.91 17.32 44.97 0.78 -2.13 16 23 F -0.19 -4.36 16.40 44.97 0.74 -3.62 16 24 C -0.15 -4.40 7.43 31.12 0.23 -4.17 16 25 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 26 H 0.37 19.04 7.90 -92.71 -0.73 18.31 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.10 2.44 8.10 -2.39 -0.02 2.42 16 29 H 0.07 1.56 7.85 -2.39 -0.02 1.54 16 30 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.42 5.35 8.47 -92.71 -0.79 4.57 16 32 H 0.17 0.74 8.14 -2.39 -0.02 0.73 16 33 H 0.17 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 2.25 7.90 -2.38 -0.02 2.23 16 35 H 0.05 1.67 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -69.80 313.29 3.32 -66.48 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -0.38 Total: 20.79 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 3.46 Total: 0.15 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -3.99 Total: -107.88 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.05 Total: -16.91 kcal Atomic # 9 Polarization: -11.64 SS G_CDS: 2.25 Total: -9.39 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -69.80 3.32 -66.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565860608.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.819 kcal (2) G-P(sol) polarization free energy of solvation -69.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds