Wall clock time and date at job start Tue Mar 31 2020 01:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00045 * 2 1 4 4 H 1.48498 * 109.47056 * 5.51263 * 3 2 1 5 5 H 1.48507 * 109.47213 * 245.50875 * 3 2 1 6 6 H 1.48500 * 109.47281 * 125.51178 * 3 2 1 7 7 C 1.38817 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99730 * 3.80470 * 7 2 1 9 9 N 1.36939 * 119.99958 * 183.80020 * 7 2 1 10 10 C 1.47426 * 125.64732 * 326.92286 * 9 7 2 11 11 C 1.54905 * 104.83145 * 204.09408 * 10 9 7 12 12 C 1.55160 * 101.58194 * 322.98985 * 11 10 9 13 13 C 1.47019 * 125.64650 * 146.61829 * 9 7 2 14 14 H 1.08998 * 109.88376 * 59.56153 * 13 9 7 15 15 C 1.52996 * 109.88107 * 298.38836 * 13 9 7 16 16 N 1.46507 * 109.47024 * 59.10573 * 15 13 9 17 17 C 1.34766 * 119.99992 * 186.55633 * 16 15 13 18 18 O 1.21276 * 120.00472 * 359.97438 * 17 16 15 19 19 C 1.50705 * 120.00041 * 179.97438 * 17 16 15 20 20 C 1.52994 * 109.47601 * 179.97438 * 19 17 16 21 21 F 1.39900 * 109.47011 * 59.99655 * 20 19 17 22 22 F 1.39892 * 109.47507 * 180.02562 * 20 19 17 23 23 F 1.39908 * 109.47312 * 300.00190 * 20 19 17 24 24 H 0.97000 * 119.99963 * 185.05522 * 1 2 3 25 25 H 1.09005 * 110.36951 * 322.92952 * 10 9 7 26 26 H 1.09000 * 110.36808 * 85.25360 * 10 9 7 27 27 H 1.09000 * 111.00995 * 81.06335 * 11 10 9 28 28 H 1.09006 * 111.00548 * 204.88421 * 11 10 9 29 29 H 1.08996 * 110.71979 * 153.86613 * 12 11 10 30 30 H 1.08998 * 110.72100 * 276.96100 * 12 11 10 31 31 H 1.08997 * 109.47247 * 179.09974 * 15 13 9 32 32 H 1.09000 * 109.47726 * 299.10565 * 15 13 9 33 33 H 0.97000 * 119.99861 * 6.55448 * 16 15 13 34 34 H 1.09002 * 109.47020 * 299.99981 * 19 17 16 35 35 H 1.09007 * 109.46754 * 59.99772 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2908 2.7432 0.1345 5 1 3.0004 1.7562 -1.2742 6 1 3.2020 1.6398 1.1396 7 6 2.0103 -1.2022 0.0005 8 1 1.4720 -2.1364 -0.0611 9 7 3.3774 -1.2035 0.0791 10 6 4.2718 -0.1796 -0.4911 11 6 5.6267 -0.9033 -0.6908 12 6 5.6744 -1.8248 0.5566 13 6 4.1960 -2.2228 0.7516 14 1 4.0146 -3.1994 0.3026 15 6 3.8571 -2.2614 2.2431 16 7 2.4349 -2.5692 2.4129 17 6 1.8777 -2.5255 3.6392 18 8 2.5537 -2.2319 4.6024 19 6 0.4146 -2.8415 3.8139 20 6 0.0394 -2.7205 5.2922 21 9 0.2906 -1.4163 5.7317 22 9 -1.3186 -3.0143 5.4543 23 9 0.8037 -3.6207 6.0425 24 1 -0.4850 -0.8368 0.0740 25 1 3.8849 0.1719 -1.4477 26 1 4.3853 0.6537 0.2023 27 1 5.6249 -1.4896 -1.6097 28 1 6.4537 -0.1932 -0.6844 29 1 6.2904 -2.7031 0.3639 30 1 6.0438 -1.2795 1.4251 31 1 4.4559 -3.0299 2.7320 32 1 4.0750 -1.2917 2.6905 33 1 1.8942 -2.8043 1.6426 34 1 -0.1809 -2.1403 3.2290 35 1 0.2190 -3.8578 3.4718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567360034.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:33 Heat of formation + Delta-G solvation = -193.100908 kcal Electronic energy + Delta-G solvation = -23181.161918 eV Core-core repulsion = 19184.742869 eV Total energy + Delta-G solvation = -3996.419050 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.12933 -48.64736 -48.58574 -40.85596 -39.43419 -35.54578 -34.77735 -33.04913 -31.63439 -30.69084 -26.69872 -25.58804 -24.50348 -22.65698 -21.51941 -20.97681 -19.84321 -19.60406 -19.44464 -18.53403 -17.62639 -17.30235 -16.70945 -16.52495 -16.33080 -15.51418 -15.42731 -15.38654 -15.09610 -15.01185 -14.77374 -14.73745 -14.62216 -14.46770 -13.90784 -13.50226 -13.30051 -13.03357 -12.92502 -12.70494 -12.62295 -12.15235 -11.99741 -11.46080 -11.25610 -11.16043 -11.08180 -10.70103 -9.98104 -9.00369 -8.38027 -5.55110 1.41338 1.45552 1.50755 1.57130 1.67802 2.18700 2.54027 2.67795 3.02301 3.13495 3.21761 3.37746 3.78507 3.89157 4.02741 4.08910 4.17712 4.23707 4.34166 4.45965 4.66630 4.76271 4.82084 5.03473 5.04590 5.16384 5.28327 5.48551 5.51318 5.79617 6.26909 6.50409 6.88987 7.13330 7.48319 8.26066 8.96654 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.019792 B = 0.006247 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.380349 B = 4481.149980 C = 5339.721564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.054 4.054 3 Si 1.096 2.904 4 H -0.320 1.320 5 H -0.263 1.263 6 H -0.288 1.288 7 C -0.296 4.296 8 H 0.059 0.941 9 N -0.623 5.623 10 C 0.081 3.919 11 C -0.117 4.117 12 C -0.116 4.116 13 C 0.143 3.857 14 H 0.054 0.946 15 C 0.118 3.882 16 N -0.691 5.691 17 C 0.508 3.492 18 O -0.580 6.580 19 C -0.187 4.187 20 C 0.474 3.526 21 F -0.190 7.190 22 F -0.177 7.177 23 F -0.182 7.182 24 H 0.256 0.744 25 H 0.046 0.954 26 H 0.021 0.979 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.412 0.588 34 H 0.144 0.856 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.561 -7.713 3.043 10.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.251 4.251 3 Si 0.927 3.073 4 H -0.250 1.250 5 H -0.189 1.189 6 H -0.215 1.215 7 C -0.425 4.425 8 H 0.076 0.924 9 N -0.350 5.350 10 C -0.043 4.043 11 C -0.156 4.156 12 C -0.154 4.154 13 C 0.036 3.964 14 H 0.072 0.928 15 C -0.007 4.007 16 N -0.342 5.342 17 C 0.294 3.706 18 O -0.462 6.462 19 C -0.228 4.228 20 C 0.420 3.580 21 F -0.172 7.172 22 F -0.158 7.158 23 F -0.163 7.163 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.039 0.961 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.121 0.879 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.251 0.749 34 H 0.162 0.838 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 6.777 -5.892 3.613 9.680 hybrid contribution -0.782 -1.425 0.034 1.625 sum 5.995 -7.317 3.646 10.137 Atomic orbital electron populations 1.71012 1.06910 1.29229 1.52911 1.26824 0.96526 1.03942 0.97835 0.83448 0.72808 0.73403 0.77627 1.24964 1.18907 1.21511 1.19733 0.80878 0.93642 1.48249 0.92357 1.44931 1.01627 1.26548 1.61855 1.22397 0.92567 0.93079 0.96307 1.22673 0.95630 0.98789 0.98464 1.22558 0.93583 1.00837 0.98434 1.21517 0.92346 0.93419 0.89110 0.92821 1.21938 0.80686 0.99430 0.98695 1.45978 1.12192 1.67544 1.08475 1.20175 0.89067 0.77637 0.83738 1.90724 1.64589 1.50550 1.40311 1.22962 0.96400 1.11325 0.92087 1.19876 0.74212 0.73530 0.90408 1.93186 1.93986 1.38568 1.91457 1.93193 1.32986 1.93162 1.96500 1.93181 1.75874 1.67866 1.79385 0.93431 0.93535 0.96133 0.90375 0.88910 0.87918 0.90838 0.90712 0.94398 0.74853 0.83823 0.80994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.33 13.70 21.65 0.30 -55.03 16 2 C -0.05 -2.92 5.50 84.86 0.47 -2.45 16 3 Si 1.10 52.13 24.69 68.60 1.69 53.82 16 4 H -0.32 -16.15 7.11 99.48 0.71 -15.44 16 5 H -0.26 -11.26 5.97 99.48 0.59 -10.66 16 6 H -0.29 -13.43 6.40 99.48 0.64 -12.80 16 7 C -0.30 -14.35 8.37 84.03 0.70 -13.64 16 8 H 0.06 2.91 7.02 -2.91 -0.02 2.89 16 9 N -0.62 -25.74 2.91 -668.25 -1.94 -27.68 16 10 C 0.08 3.04 4.63 86.85 0.40 3.44 16 11 C -0.12 -3.10 7.09 31.99 0.23 -2.87 16 12 C -0.12 -2.88 6.48 31.79 0.21 -2.67 16 13 C 0.14 4.64 3.38 45.35 0.15 4.79 16 14 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 15 C 0.12 4.05 5.23 86.38 0.45 4.50 16 16 N -0.69 -24.46 4.79 -463.07 -2.22 -26.68 16 17 C 0.51 18.33 7.60 87.66 0.67 19.00 16 18 O -0.58 -24.73 14.81 -3.02 -0.04 -24.78 16 19 C -0.19 -5.25 5.75 29.85 0.17 -5.08 16 20 C 0.47 14.48 2.89 71.98 0.21 14.69 16 21 F -0.19 -6.94 16.40 44.97 0.74 -6.20 16 22 F -0.18 -4.87 17.32 44.97 0.78 -4.09 16 23 F -0.18 -5.80 16.40 44.97 0.74 -5.06 16 24 H 0.26 14.37 8.73 -92.71 -0.81 13.56 16 25 H 0.05 1.87 6.26 -2.38 -0.01 1.85 16 26 H 0.02 0.84 5.13 -2.39 -0.01 0.83 16 27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 1.79 7.83 -2.39 -0.02 1.77 16 31 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.04 1.51 8.09 -2.39 -0.02 1.49 16 33 H 0.41 14.52 5.93 -92.71 -0.55 13.97 16 34 H 0.14 4.06 8.14 -2.39 -0.02 4.04 16 35 H 0.17 3.33 8.14 -2.38 -0.02 3.31 16 Total: -1.00 -65.62 293.40 4.05 -61.57 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.36 Total: 14.44 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 3.66 Total: 19.69 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -3.87 Total: -109.39 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.04 Total: -24.78 kcal Atomic # 9 Polarization: -17.61 SS G_CDS: 2.25 Total: -15.35 kcal Atomic # 14 Polarization: 52.13 SS G_CDS: 1.69 Total: 53.82 kcal Total: -65.62 4.05 -61.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567360034.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.532 kcal (2) G-P(sol) polarization free energy of solvation -65.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds