Wall clock time and date at job start Tue Mar 31 2020 01:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99471 * 2 1 4 4 H 1.48508 * 109.47375 * 274.95369 * 3 2 1 5 5 H 1.48499 * 109.47335 * 34.95679 * 3 2 1 6 6 H 1.48503 * 109.47287 * 154.95862 * 3 2 1 7 7 C 1.38804 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99918 * 188.78528 * 7 2 1 9 9 N 1.36935 * 120.00409 * 8.79557 * 7 2 1 10 10 C 1.47068 * 136.05501 * 357.59113 * 9 7 2 11 11 C 1.53490 * 87.98680 * 153.14648 * 10 9 7 12 12 C 1.53003 * 114.20847 * 272.48378 * 11 10 9 13 13 C 1.53005 * 109.47063 * 158.77373 * 12 11 10 14 14 O 1.42902 * 109.46852 * 174.91215 * 13 12 11 15 15 N 1.46499 * 114.38723 * 139.67038 * 11 10 9 16 16 C 1.34772 * 120.00422 * 79.87391 * 15 11 10 17 17 O 1.21617 * 119.99793 * 4.08275 * 16 15 11 18 18 C 1.47371 * 120.00580 * 184.08397 * 16 15 11 19 19 C 1.47023 * 127.19334 * 179.70661 * 18 16 15 20 20 C 1.34182 * 105.95189 * 179.89225 * 19 18 16 21 21 O 1.34216 * 109.12606 * 0.37275 * 20 19 18 22 22 C 1.33651 * 110.90682 * 359.75515 * 21 20 19 23 23 C 1.47062 * 136.06118 * 177.97867 * 9 7 2 24 24 H 0.96996 * 120.00869 * 0.02562 * 1 2 3 25 25 H 1.08999 * 113.47161 * 267.92816 * 10 9 7 26 26 H 1.08999 * 113.46659 * 38.36700 * 10 9 7 27 27 H 1.08997 * 109.46930 * 278.77618 * 12 11 10 28 28 H 1.09006 * 109.46996 * 38.77717 * 12 11 10 29 29 H 1.08998 * 109.46958 * 294.90720 * 13 12 11 30 30 H 1.09002 * 109.46723 * 54.91433 * 13 12 11 31 31 H 0.96700 * 113.99997 * 180.02562 * 14 13 12 32 32 H 0.96998 * 119.99547 * 259.87241 * 15 11 10 33 33 H 1.07993 * 127.02560 * 0.02562 * 19 18 16 34 34 H 1.07998 * 125.44073 * 180.12692 * 20 19 18 35 35 H 1.08001 * 125.79946 * 180.02562 * 22 21 20 36 36 H 1.08995 * 113.46734 * 321.63294 * 23 9 7 37 37 H 1.09004 * 113.47233 * 92.07731 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.3928 2.1070 -1.3949 5 1 1.5037 2.6202 0.8022 6 1 3.5961 1.4124 0.5926 7 6 2.0102 -1.2020 -0.0005 8 1 3.0808 -1.2075 0.1423 9 7 1.3378 -2.3810 -0.1824 10 6 -0.0658 -2.7831 -0.3584 11 6 0.4389 -4.0100 -1.1303 12 6 0.6439 -3.7688 -2.6272 13 6 1.6094 -4.8165 -3.1851 14 8 1.7090 -4.6654 -4.6026 15 7 -0.2856 -5.2492 -0.8373 16 6 -1.4772 -5.4870 -1.4203 17 8 -1.9165 -4.7091 -2.2455 18 6 -2.2480 -6.6897 -1.0579 19 6 -3.5576 -7.0986 -1.5862 20 6 -3.8600 -8.2518 -0.9704 21 8 -2.8697 -8.5702 -0.1222 22 6 -1.8981 -7.6531 -0.1576 23 6 1.7006 -3.8027 -0.2808 24 1 -0.4851 0.8399 -0.0004 25 1 -0.5660 -3.0343 0.5769 26 1 -0.6420 -2.0909 -0.9723 27 1 -0.3136 -3.8463 -3.1421 28 1 1.0598 -2.7730 -2.7811 29 1 2.5928 -4.6805 -2.7352 30 1 1.2375 -5.8142 -2.9513 31 1 2.3056 -5.2987 -5.0247 32 1 0.0924 -5.8984 -0.2238 33 1 -4.1534 -6.5785 -2.3215 34 1 -4.7587 -8.8294 -1.1287 35 1 -0.9901 -7.6718 0.4269 36 1 2.6264 -3.9775 -0.8289 37 1 1.6709 -4.3256 0.6751 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570756771.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:19 Heat of formation + Delta-G solvation = -3.547786 kcal Electronic energy + Delta-G solvation = -22147.541547 eV Core-core repulsion = 18701.198878 eV Total energy + Delta-G solvation = -3446.342669 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.59228 -39.93534 -37.79894 -36.40062 -33.69664 -32.90088 -31.91657 -30.45947 -29.60348 -27.16409 -24.95456 -24.26035 -22.83242 -21.69476 -21.50761 -19.96559 -18.77316 -18.21970 -17.12625 -16.75692 -16.21307 -16.10695 -15.48853 -14.99471 -14.79904 -14.59586 -14.13179 -13.73921 -13.63626 -13.41919 -12.98037 -12.70182 -12.41944 -11.93232 -11.63811 -11.50271 -11.17777 -10.99380 -10.85245 -10.65355 -10.17343 -10.00880 -9.83851 -9.75881 -9.53479 -9.09341 -8.92008 -8.77283 -8.51986 -6.96203 -5.79841 -3.12726 1.33648 2.03936 2.81747 3.36222 3.41961 3.45822 3.47136 3.61040 4.42052 4.48219 4.51550 4.66854 4.96261 5.10713 5.36138 5.45098 5.48975 5.54143 5.59697 5.64143 5.78834 5.89312 5.93276 6.17177 6.21258 6.33226 6.45178 6.55103 6.83557 6.91914 6.94513 7.20656 7.32288 7.54884 7.86155 7.89404 7.94266 8.57783 8.99473 9.66825 10.56651 11.37649 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.004655 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.528198 B = 6014.144591 C = 6661.523294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.002 4.002 3 Si 0.913 3.087 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.225 4.225 8 H 0.084 0.916 9 N -0.599 5.599 10 C 0.160 3.840 11 C 0.122 3.878 12 C -0.101 4.101 13 C 0.083 3.917 14 O -0.573 6.573 15 N -0.710 5.710 16 C 0.582 3.418 17 O -0.523 6.523 18 C -0.225 4.225 19 C -0.164 4.164 20 C -0.047 4.047 21 O -0.178 6.178 22 C 0.012 3.988 23 C 0.117 3.883 24 H 0.256 0.744 25 H 0.028 0.972 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.035 0.965 31 H 0.370 0.630 32 H 0.392 0.608 33 H 0.159 0.841 34 H 0.207 0.793 35 H 0.210 0.790 36 H 0.048 0.952 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.297 -18.788 -1.593 18.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.199 4.199 3 Si 0.743 3.257 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.352 4.352 8 H 0.102 0.898 9 N -0.325 5.325 10 C 0.033 3.967 11 C 0.035 3.965 12 C -0.140 4.140 13 C 0.006 3.994 14 O -0.377 6.377 15 N -0.361 5.361 16 C 0.369 3.631 17 O -0.400 6.400 18 C -0.230 4.230 19 C -0.183 4.183 20 C -0.112 4.112 21 O -0.073 6.073 22 C -0.058 4.058 23 C -0.010 4.010 24 H 0.066 0.934 25 H 0.046 0.954 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.216 0.784 32 H 0.225 0.775 33 H 0.177 0.823 34 H 0.223 0.777 35 H 0.227 0.773 36 H 0.066 0.934 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.004 -17.564 -1.837 17.914 hybrid contribution 0.948 0.209 0.412 1.055 sum -2.056 -17.356 -1.424 17.535 Atomic orbital electron populations 1.69864 1.05091 1.25658 1.55210 1.24822 0.95622 0.97647 1.01830 0.86098 0.78588 0.83341 0.77681 1.21340 1.21693 1.20539 1.18871 0.90928 0.81188 1.44170 0.89847 1.45303 1.03212 0.99298 1.84655 1.22395 0.88731 0.90177 0.95375 1.22622 0.94568 0.84225 0.95058 1.21414 1.00934 0.99528 0.92091 1.22165 0.98722 0.98197 0.80345 1.86536 1.69579 1.60544 1.21018 1.45839 1.20252 1.22618 1.47435 1.17253 0.80675 0.84063 0.81118 1.90767 1.69094 1.47501 1.32613 1.21755 0.98560 0.98928 1.03714 1.22830 0.95719 0.96720 1.03072 1.23906 0.93711 0.98909 0.94724 1.83768 1.26097 1.44895 1.52563 1.24434 0.93287 0.88328 0.99771 1.22680 0.94593 0.88147 0.95562 0.93422 0.95390 0.90615 0.88702 0.89250 0.93915 0.94707 0.78439 0.77456 0.82336 0.77660 0.77335 0.93383 0.94767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.60 11.61 55.49 0.64 -26.96 16 2 C 0.00 -0.04 5.50 -17.43 -0.10 -0.14 16 3 Si 0.91 22.23 29.56 -169.99 -5.03 17.20 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.22 -6.26 10.73 -15.06 -0.16 -6.42 16 8 H 0.08 2.22 7.84 -52.48 -0.41 1.81 16 9 N -0.60 -15.20 3.56 -184.77 -0.66 -15.86 16 10 C 0.16 3.90 6.74 -8.52 -0.06 3.84 16 11 C 0.12 2.32 0.83 -131.70 -0.11 2.21 16 12 C -0.10 -2.03 4.89 -26.73 -0.13 -2.16 16 13 C 0.08 1.34 6.81 37.16 0.25 1.59 16 14 O -0.57 -9.19 13.66 -35.23 -0.48 -9.67 16 15 N -0.71 -10.80 5.05 -48.51 -0.25 -11.04 16 16 C 0.58 9.76 7.62 -12.55 -0.10 9.66 16 17 O -0.52 -11.03 14.70 5.26 0.08 -10.95 16 18 C -0.22 -2.99 6.31 -103.28 -0.65 -3.64 16 19 C -0.16 -1.95 11.01 -37.45 -0.41 -2.37 16 20 C -0.05 -0.42 12.03 29.30 0.35 -0.07 16 21 O -0.18 -1.76 10.52 7.65 0.08 -1.68 16 22 C 0.01 0.12 11.61 30.08 0.35 0.47 16 23 C 0.12 2.28 7.83 -8.52 -0.07 2.22 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 2.14 7.22 -51.93 -0.37 1.77 16 27 H 0.09 2.10 5.73 -51.93 -0.30 1.80 16 28 H 0.09 2.07 7.93 -51.93 -0.41 1.66 16 29 H 0.04 0.64 6.93 -51.93 -0.36 0.28 16 30 H 0.03 0.50 7.91 -51.93 -0.41 0.09 16 31 H 0.37 3.82 9.12 45.56 0.42 4.24 16 32 H 0.39 4.40 7.66 -40.82 -0.31 4.08 16 33 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.21 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.21 1.23 7.48 -52.49 -0.39 0.84 16 36 H 0.05 0.87 6.83 -51.93 -0.35 0.52 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 317.26 15.07 4.78 4.78 Total: -1.00 -36.34 317.26 -5.39 -41.73 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -3.74 Total: 7.25 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -0.83 Total: 5.19 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.26 Total: -53.86 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.32 Total: -22.30 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -36.34 -5.39 -41.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570756771.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.181 kcal (2) G-P(sol) polarization free energy of solvation -36.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds