Wall clock time and date at job start Tue Mar 31 2020 01:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99471 * 2 1 4 4 H 1.48508 * 109.47375 * 274.95369 * 3 2 1 5 5 H 1.48499 * 109.47335 * 34.95679 * 3 2 1 6 6 H 1.48503 * 109.47287 * 154.95862 * 3 2 1 7 7 C 1.38804 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99918 * 188.78528 * 7 2 1 9 9 N 1.36935 * 120.00409 * 8.79557 * 7 2 1 10 10 C 1.47068 * 136.05501 * 357.59113 * 9 7 2 11 11 C 1.53490 * 87.98680 * 153.14648 * 10 9 7 12 12 C 1.53003 * 114.20847 * 272.48378 * 11 10 9 13 13 C 1.53005 * 109.47063 * 158.77373 * 12 11 10 14 14 O 1.42902 * 109.46852 * 174.91215 * 13 12 11 15 15 N 1.46499 * 114.38723 * 139.67038 * 11 10 9 16 16 C 1.34772 * 120.00422 * 79.87391 * 15 11 10 17 17 O 1.21617 * 119.99793 * 4.08275 * 16 15 11 18 18 C 1.47371 * 120.00580 * 184.08397 * 16 15 11 19 19 C 1.47023 * 127.19334 * 179.70661 * 18 16 15 20 20 C 1.34182 * 105.95189 * 179.89225 * 19 18 16 21 21 O 1.34216 * 109.12606 * 0.37275 * 20 19 18 22 22 C 1.33651 * 110.90682 * 359.75515 * 21 20 19 23 23 C 1.47062 * 136.06118 * 177.97867 * 9 7 2 24 24 H 0.96996 * 120.00869 * 0.02562 * 1 2 3 25 25 H 1.08999 * 113.47161 * 267.92816 * 10 9 7 26 26 H 1.08999 * 113.46659 * 38.36700 * 10 9 7 27 27 H 1.08997 * 109.46930 * 278.77618 * 12 11 10 28 28 H 1.09006 * 109.46996 * 38.77717 * 12 11 10 29 29 H 1.08998 * 109.46958 * 294.90720 * 13 12 11 30 30 H 1.09002 * 109.46723 * 54.91433 * 13 12 11 31 31 H 0.96700 * 113.99997 * 180.02562 * 14 13 12 32 32 H 0.96998 * 119.99547 * 259.87241 * 15 11 10 33 33 H 1.07993 * 127.02560 * 0.02562 * 19 18 16 34 34 H 1.07998 * 125.44073 * 180.12692 * 20 19 18 35 35 H 1.08001 * 125.79946 * 180.02562 * 22 21 20 36 36 H 1.08995 * 113.46734 * 321.63294 * 23 9 7 37 37 H 1.09004 * 113.47233 * 92.07731 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.3928 2.1070 -1.3949 5 1 1.5037 2.6202 0.8022 6 1 3.5961 1.4124 0.5926 7 6 2.0102 -1.2020 -0.0005 8 1 3.0808 -1.2075 0.1423 9 7 1.3378 -2.3810 -0.1824 10 6 -0.0658 -2.7831 -0.3584 11 6 0.4389 -4.0100 -1.1303 12 6 0.6439 -3.7688 -2.6272 13 6 1.6094 -4.8165 -3.1851 14 8 1.7090 -4.6654 -4.6026 15 7 -0.2856 -5.2492 -0.8373 16 6 -1.4772 -5.4870 -1.4203 17 8 -1.9165 -4.7091 -2.2455 18 6 -2.2480 -6.6897 -1.0579 19 6 -3.5576 -7.0986 -1.5862 20 6 -3.8600 -8.2518 -0.9704 21 8 -2.8697 -8.5702 -0.1222 22 6 -1.8981 -7.6531 -0.1576 23 6 1.7006 -3.8027 -0.2808 24 1 -0.4851 0.8399 -0.0004 25 1 -0.5660 -3.0343 0.5769 26 1 -0.6420 -2.0909 -0.9723 27 1 -0.3136 -3.8463 -3.1421 28 1 1.0598 -2.7730 -2.7811 29 1 2.5928 -4.6805 -2.7352 30 1 1.2375 -5.8142 -2.9513 31 1 2.3056 -5.2987 -5.0247 32 1 0.0924 -5.8984 -0.2238 33 1 -4.1534 -6.5785 -2.3215 34 1 -4.7587 -8.8294 -1.1287 35 1 -0.9901 -7.6718 0.4269 36 1 2.6264 -3.9775 -0.8289 37 1 1.6709 -4.3256 0.6751 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570756771.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:18 Heat of formation + Delta-G solvation = -34.211438 kcal Electronic energy + Delta-G solvation = -22148.871223 eV Core-core repulsion = 18701.198878 eV Total energy + Delta-G solvation = -3447.672345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.41336 -41.48100 -39.33739 -37.71140 -35.31923 -34.16925 -33.47592 -31.95543 -30.55427 -29.08666 -26.70407 -25.70288 -24.20550 -23.38972 -22.33712 -21.16542 -20.24486 -19.29365 -18.77563 -18.37433 -17.21293 -17.18070 -17.01746 -16.70224 -16.09075 -15.82250 -15.73337 -15.33643 -15.03546 -14.65427 -14.48806 -13.82402 -13.80290 -13.29716 -13.20700 -13.15571 -12.95103 -12.81090 -12.71955 -12.32600 -12.02284 -11.80045 -11.35989 -11.06952 -10.86448 -10.79917 -10.53519 -10.07990 -9.67700 -9.00872 -7.94956 -5.28538 0.43301 1.18399 1.43818 1.47915 1.55840 2.00102 2.16965 2.39958 2.48627 3.12361 3.30683 3.35261 3.68359 3.72320 3.84304 4.11995 4.17276 4.30462 4.35729 4.45966 4.59768 4.61295 4.71558 4.81229 4.90372 5.01895 5.07704 5.15757 5.20804 5.30916 5.36624 5.45550 5.70178 5.84977 6.04259 6.65225 6.83628 6.94674 7.32419 7.56055 8.52918 9.23449 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.004655 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.528198 B = 6014.144591 C = 6661.523294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.068 4.068 3 Si 0.981 3.019 4 H -0.290 1.290 5 H -0.297 1.297 6 H -0.258 1.258 7 C -0.227 4.227 8 H 0.097 0.903 9 N -0.629 5.629 10 C 0.155 3.845 11 C 0.151 3.849 12 C -0.098 4.098 13 C 0.095 3.905 14 O -0.595 6.595 15 N -0.693 5.693 16 C 0.581 3.419 17 O -0.579 6.579 18 C -0.268 4.268 19 C -0.203 4.203 20 C -0.020 4.020 21 O -0.174 6.174 22 C 0.048 3.952 23 C 0.128 3.872 24 H 0.247 0.753 25 H 0.017 0.983 26 H 0.020 0.980 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.397 0.603 32 H 0.417 0.583 33 H 0.147 0.853 34 H 0.248 0.752 35 H 0.253 0.747 36 H 0.072 0.928 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.487 -22.192 -0.474 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.182 1.182 7 C -0.355 4.355 8 H 0.115 0.885 9 N -0.355 5.355 10 C 0.028 3.972 11 C 0.063 3.937 12 C -0.137 4.137 13 C 0.017 3.983 14 O -0.404 6.404 15 N -0.346 5.346 16 C 0.371 3.629 17 O -0.460 6.460 18 C -0.273 4.273 19 C -0.222 4.222 20 C -0.086 4.086 21 O -0.069 6.069 22 C -0.022 4.022 23 C 0.003 3.997 24 H 0.056 0.944 25 H 0.035 0.965 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.247 0.753 32 H 0.255 0.745 33 H 0.165 0.835 34 H 0.264 0.736 35 H 0.268 0.732 36 H 0.090 0.910 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.138 -21.068 -0.696 21.110 hybrid contribution 0.325 1.153 0.049 1.199 sum -0.813 -19.915 -0.647 19.942 Atomic orbital electron populations 1.70087 1.06932 1.25726 1.57649 1.25727 0.96375 1.01318 1.02676 0.85029 0.78127 0.78825 0.77187 1.21749 1.22347 1.18173 1.19364 0.91737 0.82390 1.41996 0.88513 1.45561 1.03786 1.01357 1.84795 1.22299 0.88266 0.91863 0.94808 1.21911 0.94001 0.83765 0.93999 1.21257 1.00530 0.98980 0.92907 1.21990 0.98273 0.97410 0.80579 1.86474 1.70801 1.62097 1.21036 1.45492 1.19831 1.21560 1.47729 1.17795 0.80630 0.84520 0.80004 1.90752 1.70319 1.49702 1.35219 1.21534 0.99650 0.99148 1.06967 1.22949 0.96061 0.98560 1.04666 1.24552 0.93982 0.97572 0.92465 1.83837 1.26167 1.44548 1.52308 1.25093 0.93620 0.86161 0.97357 1.22830 0.95205 0.84703 0.96997 0.94383 0.96542 0.96116 0.91552 0.93495 0.92031 0.92326 0.75344 0.74493 0.83497 0.73573 0.73159 0.91005 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.95 11.61 21.65 0.25 -60.70 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 3 Si 0.98 46.75 29.56 68.60 2.03 48.77 16 4 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.23 -12.75 10.73 84.03 0.90 -11.85 16 8 H 0.10 5.03 7.84 -2.91 -0.02 5.01 16 9 N -0.63 -32.26 3.56 -738.48 -2.63 -34.89 16 10 C 0.16 7.92 6.74 83.17 0.56 8.48 16 11 C 0.15 5.77 0.83 4.08 0.00 5.77 16 12 C -0.10 -4.04 4.89 30.60 0.15 -3.89 16 13 C 0.09 2.88 6.81 71.98 0.49 3.37 16 14 O -0.60 -18.33 13.66 -148.98 -2.04 -20.36 16 15 N -0.69 -20.10 5.05 -425.64 -2.15 -22.25 16 16 C 0.58 19.58 7.62 86.65 0.66 20.24 16 17 O -0.58 -25.95 14.70 -4.08 -0.06 -26.01 16 18 C -0.27 -6.78 6.31 -18.99 -0.12 -6.90 16 19 C -0.20 -4.70 11.01 23.65 0.26 -4.44 16 20 C -0.02 -0.31 12.03 66.89 0.80 0.50 16 21 O -0.17 -2.71 10.52 4.47 0.05 -2.67 16 22 C 0.05 0.76 11.61 67.40 0.78 1.54 16 23 C 0.13 4.69 7.83 83.17 0.65 5.35 16 24 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 25 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.02 1.26 7.22 -2.39 -0.02 1.24 16 27 H 0.07 3.13 5.73 -2.39 -0.01 3.12 16 28 H 0.05 2.29 7.93 -2.38 -0.02 2.28 16 29 H 0.06 1.65 6.93 -2.39 -0.02 1.63 16 30 H 0.06 1.51 7.91 -2.39 -0.02 1.50 16 31 H 0.40 7.21 9.12 -74.06 -0.68 6.53 16 32 H 0.42 7.79 7.66 -92.71 -0.71 7.08 16 33 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 34 H 0.25 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.25 1.49 7.48 -2.91 -0.02 1.47 16 36 H 0.07 2.34 6.83 -2.39 -0.02 2.32 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -86.77 317.26 0.80 -85.98 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -0.27 Total: 17.48 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 5.61 Total: 14.65 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -4.53 Total: -117.84 kcal Atomic # 8 Polarization: -46.99 SS G_CDS: -2.05 Total: -49.04 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Total: -86.77 0.80 -85.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570756771.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.768 kcal (2) G-P(sol) polarization free energy of solvation -86.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds