Wall clock time and date at job start Tue Mar 31 2020 02:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 112.94053 * 2 1 4 4 C 1.53939 * 113.73466 * 228.29308 * 2 1 3 5 5 N 1.48182 * 86.22552 * 222.01493 * 4 2 1 6 6 C 1.47968 * 90.67576 * 24.59455 * 5 4 2 7 7 H 1.08998 * 113.75959 * 89.78036 * 6 5 4 8 8 C 1.50703 * 113.75929 * 221.03824 * 6 5 4 9 9 O 1.21277 * 119.99605 * 358.68666 * 8 6 5 10 10 N 1.34773 * 119.99847 * 178.68357 * 8 6 5 11 11 C 1.46496 * 119.99909 * 180.02562 * 10 8 6 12 12 H 1.09001 * 109.47459 * 35.00135 * 11 10 8 13 13 C 1.50697 * 109.47428 * 154.99906 * 11 10 8 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 11 10 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 11 10 16 16 N 1.31510 * 119.99600 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 120.00227 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46909 * 90.00072 * 17 15 13 19 19 H 1.48503 * 109.46868 * 209.99959 * 17 15 13 20 20 H 1.48495 * 109.46964 * 330.00013 * 17 15 13 21 21 C 1.53006 * 109.46995 * 275.00159 * 11 10 8 22 22 F 1.39900 * 109.46764 * 299.99774 * 21 11 10 23 23 F 1.39897 * 109.47129 * 59.99752 * 21 11 10 24 24 F 1.39903 * 109.46814 * 180.02562 * 21 11 10 25 25 H 1.09000 * 109.47163 * 288.43488 * 1 2 3 26 26 H 1.09004 * 109.46820 * 48.43327 * 1 2 3 27 27 H 1.09002 * 109.47332 * 168.42746 * 1 2 3 28 28 H 1.09002 * 109.47488 * 191.56600 * 3 2 1 29 29 H 1.08995 * 109.47088 * 311.56749 * 3 2 1 30 30 H 1.09005 * 109.47141 * 71.56601 * 3 2 1 31 31 H 1.09000 * 113.75940 * 336.24042 * 4 2 1 32 32 H 1.09001 * 113.75986 * 107.60284 * 4 2 1 33 33 H 1.00900 * 110.99658 * 271.74261 * 5 4 2 34 34 H 0.97003 * 120.00265 * 359.97438 * 10 8 6 35 35 H 0.97006 * 120.00212 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1263 1.4090 0.0000 4 6 2.1496 -0.9376 -1.0520 5 7 3.1160 -1.3228 0.0032 6 6 2.1495 -0.9351 1.0544 7 1 1.4897 -1.7452 1.3647 8 6 2.7757 -0.2088 2.2169 9 8 3.9728 -0.0155 2.2373 10 7 2.0054 0.2259 3.2338 11 6 2.6141 0.9324 4.3636 12 1 3.4442 1.5419 4.0065 13 6 1.5844 1.8187 5.0156 14 1 0.5771 1.8521 4.6274 15 6 1.9278 2.5862 6.1082 16 7 3.1542 2.5452 6.5812 17 14 0.6511 3.6844 6.9168 18 1 -0.0508 2.9254 7.9828 19 1 1.3219 4.8682 7.5117 20 1 -0.3325 4.1325 5.8986 21 6 3.1301 -0.0852 5.3831 22 9 2.0647 -0.8673 5.8415 23 9 4.0861 -0.9080 4.7779 24 9 3.7109 0.5896 6.4624 25 1 -0.3633 0.3250 0.9749 26 1 -0.3633 0.6819 -0.7689 27 1 -0.3634 -1.0068 -0.2062 28 1 3.1951 1.3512 -0.2060 29 1 1.6400 2.0093 -0.7688 30 1 1.9687 1.8703 0.9750 31 1 1.4905 -1.7496 -1.3591 32 1 2.6025 -0.4143 -1.8942 33 1 3.9159 -0.7078 0.0029 34 1 1.0479 0.0717 3.2173 35 1 3.3960 3.0854 7.3498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573612898.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:16 Heat of formation + Delta-G solvation = -146.070459 kcal Electronic energy + Delta-G solvation = -23798.317615 eV Core-core repulsion = 19803.937958 eV Total energy + Delta-G solvation = -3994.379656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.36586 -46.02042 -45.63197 -40.79885 -37.95362 -34.71368 -32.64272 -31.55579 -29.01333 -27.53818 -26.45680 -24.58490 -23.81262 -21.72647 -20.15845 -18.75714 -17.74785 -16.90357 -16.73737 -16.62761 -15.80594 -15.34116 -15.06582 -14.80118 -14.43961 -13.77937 -13.75617 -13.33962 -12.96649 -12.76201 -12.73055 -12.44842 -12.39782 -12.30868 -12.11962 -11.99752 -11.93457 -11.83596 -11.47956 -11.20704 -11.00253 -10.92686 -10.83229 -10.53508 -10.44479 -9.70705 -9.19697 -8.77248 -8.49804 -8.31120 -6.27734 -4.52253 3.01566 3.15743 3.21741 3.23904 3.69453 4.08622 4.17275 4.24764 4.54724 4.67517 4.89391 5.00176 5.16878 5.31375 5.47454 5.53803 5.63292 5.75267 5.80463 5.84586 5.85852 5.88003 5.96281 6.01996 6.17908 6.21901 6.26330 6.88057 7.10664 7.34394 7.41977 7.58628 8.25207 8.44865 8.80125 9.15854 10.63797 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.021416 B = 0.006617 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.128476 B = 4230.551803 C = 4978.951974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C -0.139 4.139 4 C 0.022 3.978 5 N -0.636 5.636 6 C 0.029 3.971 7 H 0.124 0.876 8 C 0.510 3.490 9 O -0.532 6.532 10 N -0.706 5.706 11 C 0.245 3.755 12 H 0.084 0.916 13 C -0.553 4.553 14 H 0.077 0.923 15 C 0.065 3.935 16 N -0.839 5.839 17 Si 0.915 3.085 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.270 1.270 21 C 0.416 3.584 22 F -0.209 7.209 23 F -0.217 7.217 24 F -0.137 7.137 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.350 0.650 34 H 0.399 0.601 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.604 -3.078 -10.545 12.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 C -0.196 4.196 4 C -0.108 4.108 5 N -0.266 5.266 6 C -0.084 4.084 7 H 0.142 0.858 8 C 0.295 3.705 9 O -0.408 6.408 10 N -0.355 5.355 11 C 0.140 3.860 12 H 0.102 0.898 13 C -0.590 4.590 14 H 0.095 0.905 15 C -0.144 4.144 16 N -0.472 5.472 17 Si 0.741 3.259 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.195 1.195 21 C 0.360 3.640 22 F -0.191 7.191 23 F -0.199 7.199 24 F -0.118 7.118 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.168 0.832 34 H 0.232 0.768 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.476 -3.717 -10.339 11.863 hybrid contribution -1.053 1.229 0.814 1.811 sum -5.529 -2.489 -9.525 11.291 Atomic orbital electron populations 1.21794 0.93441 1.01971 1.02590 1.23451 0.97065 0.96169 0.94992 1.21713 1.00587 0.93964 1.03382 1.23838 0.95335 0.96970 0.94678 1.65305 1.05640 1.54363 1.01264 1.23466 0.95721 0.97542 0.91719 0.85801 1.20374 0.87412 0.79222 0.83512 1.90699 1.14566 1.56661 1.78918 1.46041 1.11097 1.57773 1.20632 1.19723 0.97684 0.87480 0.81148 0.89816 1.20863 0.96791 1.25616 1.15689 0.90460 1.25085 0.96248 0.96808 0.96243 1.70401 1.17480 1.35911 1.23416 0.86220 0.80630 0.79573 0.79477 1.20169 1.20776 1.19486 1.23129 0.74655 0.81337 0.84867 1.92988 1.58094 1.77445 1.90591 1.93077 1.66908 1.76045 1.83864 1.93406 1.84627 1.77260 1.56501 0.91792 0.92217 0.92154 0.92262 0.91772 0.90900 0.88438 0.90784 0.83190 0.76761 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.21 37.16 0.34 -1.02 16 2 C -0.12 -1.35 1.35 -153.56 -0.21 -1.56 16 3 C -0.14 -1.78 8.26 37.16 0.31 -1.48 16 4 C 0.02 0.24 8.00 -2.64 -0.02 0.22 16 5 N -0.64 -9.16 8.43 -110.10 -0.93 -10.09 16 6 C 0.03 0.43 4.26 -67.80 -0.29 0.14 16 7 H 0.12 1.65 8.10 -51.93 -0.42 1.23 16 8 C 0.51 9.76 5.28 -10.99 -0.06 9.70 16 9 O -0.53 -12.16 14.56 5.56 0.08 -12.08 16 10 N -0.71 -13.96 4.99 -54.93 -0.27 -14.23 16 11 C 0.25 5.97 2.21 -69.08 -0.15 5.82 16 12 H 0.08 2.29 7.58 -51.93 -0.39 1.89 16 13 C -0.55 -13.77 8.47 -34.44 -0.29 -14.06 16 14 H 0.08 1.81 7.74 -52.49 -0.41 1.40 16 15 C 0.07 1.67 5.20 -17.82 -0.09 1.58 16 16 N -0.84 -22.79 9.50 55.43 0.53 -22.27 16 17 Si 0.91 19.78 29.54 -169.99 -5.02 14.76 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 21 C 0.42 10.67 2.81 37.16 0.10 10.78 16 22 F -0.21 -5.17 16.94 2.25 0.04 -5.13 16 23 F -0.22 -5.59 15.68 2.25 0.04 -5.55 16 24 F -0.14 -3.79 12.91 2.25 0.03 -3.76 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.51 7.94 -51.93 -0.41 0.10 16 28 H 0.06 0.80 7.40 -51.93 -0.38 0.42 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.11 7.46 -51.93 -0.39 0.72 16 31 H 0.10 0.92 7.96 -51.93 -0.41 0.51 16 32 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.35 5.43 7.07 -39.29 -0.28 5.16 16 34 H 0.40 6.81 8.54 -40.82 -0.35 6.46 16 35 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 299.51 15.07 4.51 4.51 Total: -1.00 -29.29 299.51 -5.62 -34.91 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -4.27 Total: 8.81 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -0.36 Total: 10.12 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.68 Total: -46.59 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.08 Total: -12.08 kcal Atomic # 9 Polarization: -14.54 SS G_CDS: 0.10 Total: -14.44 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.29 -5.62 -34.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573612898.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.157 kcal (2) G-P(sol) polarization free energy of solvation -29.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds