Wall clock time and date at job start Tue Mar 31 2020 02:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 112.94053 * 2 1 4 4 C 1.53939 * 113.73466 * 228.29308 * 2 1 3 5 5 N 1.48182 * 86.22552 * 222.01493 * 4 2 1 6 6 C 1.47968 * 90.67576 * 24.59455 * 5 4 2 7 7 H 1.08998 * 113.75959 * 89.78036 * 6 5 4 8 8 C 1.50703 * 113.75929 * 221.03824 * 6 5 4 9 9 O 1.21277 * 119.99605 * 358.68666 * 8 6 5 10 10 N 1.34773 * 119.99847 * 178.68357 * 8 6 5 11 11 C 1.46496 * 119.99909 * 180.02562 * 10 8 6 12 12 H 1.09001 * 109.47459 * 35.00135 * 11 10 8 13 13 C 1.50697 * 109.47428 * 154.99906 * 11 10 8 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 11 10 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 11 10 16 16 N 1.31510 * 119.99600 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 120.00227 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46909 * 90.00072 * 17 15 13 19 19 H 1.48503 * 109.46868 * 209.99959 * 17 15 13 20 20 H 1.48495 * 109.46964 * 330.00013 * 17 15 13 21 21 C 1.53006 * 109.46995 * 275.00159 * 11 10 8 22 22 F 1.39900 * 109.46764 * 299.99774 * 21 11 10 23 23 F 1.39897 * 109.47129 * 59.99752 * 21 11 10 24 24 F 1.39903 * 109.46814 * 180.02562 * 21 11 10 25 25 H 1.09000 * 109.47163 * 288.43488 * 1 2 3 26 26 H 1.09004 * 109.46820 * 48.43327 * 1 2 3 27 27 H 1.09002 * 109.47332 * 168.42746 * 1 2 3 28 28 H 1.09002 * 109.47488 * 191.56600 * 3 2 1 29 29 H 1.08995 * 109.47088 * 311.56749 * 3 2 1 30 30 H 1.09005 * 109.47141 * 71.56601 * 3 2 1 31 31 H 1.09000 * 113.75940 * 336.24042 * 4 2 1 32 32 H 1.09001 * 113.75986 * 107.60284 * 4 2 1 33 33 H 1.00900 * 110.99658 * 271.74261 * 5 4 2 34 34 H 0.97003 * 120.00265 * 359.97438 * 10 8 6 35 35 H 0.97006 * 120.00212 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1263 1.4090 0.0000 4 6 2.1496 -0.9376 -1.0520 5 7 3.1160 -1.3228 0.0032 6 6 2.1495 -0.9351 1.0544 7 1 1.4897 -1.7452 1.3647 8 6 2.7757 -0.2088 2.2169 9 8 3.9728 -0.0155 2.2373 10 7 2.0054 0.2259 3.2338 11 6 2.6141 0.9324 4.3636 12 1 3.4442 1.5419 4.0065 13 6 1.5844 1.8187 5.0156 14 1 0.5771 1.8521 4.6274 15 6 1.9278 2.5862 6.1082 16 7 3.1542 2.5452 6.5812 17 14 0.6511 3.6844 6.9168 18 1 -0.0508 2.9254 7.9828 19 1 1.3219 4.8682 7.5117 20 1 -0.3325 4.1325 5.8986 21 6 3.1301 -0.0852 5.3831 22 9 2.0647 -0.8673 5.8415 23 9 4.0861 -0.9080 4.7779 24 9 3.7109 0.5896 6.4624 25 1 -0.3633 0.3250 0.9749 26 1 -0.3633 0.6819 -0.7689 27 1 -0.3634 -1.0068 -0.2062 28 1 3.1951 1.3512 -0.2060 29 1 1.6400 2.0093 -0.7688 30 1 1.9687 1.8703 0.9750 31 1 1.4905 -1.7496 -1.3591 32 1 2.6025 -0.4143 -1.8942 33 1 3.9159 -0.7078 0.0029 34 1 1.0479 0.0717 3.2173 35 1 3.3960 3.0854 7.3498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573612898.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:16 Heat of formation + Delta-G solvation = -168.097024 kcal Electronic energy + Delta-G solvation = -23799.272758 eV Core-core repulsion = 19803.937958 eV Total energy + Delta-G solvation = -3995.334800 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.44870 -48.08717 -47.75703 -41.99292 -39.42345 -36.51716 -34.50089 -32.52843 -30.78783 -28.45437 -27.77947 -26.57590 -24.81367 -23.50858 -21.77697 -20.05323 -19.22048 -18.90134 -18.71802 -18.44263 -17.59657 -16.99031 -16.51220 -16.31320 -15.46876 -15.27103 -15.01801 -14.87439 -14.72069 -14.52490 -14.48904 -14.32717 -14.11110 -14.03395 -13.90392 -13.67349 -13.06244 -12.98190 -12.96159 -12.76562 -12.67458 -12.31370 -12.23576 -11.99096 -11.59484 -11.51467 -10.71459 -10.71302 -10.10906 -9.52887 -8.23214 -6.54401 1.45321 1.45929 1.53780 1.57771 2.14122 2.37764 2.50457 2.91663 3.02227 3.23436 3.57853 3.74343 3.81618 3.92403 4.07793 4.18633 4.34084 4.54543 4.66040 4.71441 4.81902 4.85492 4.98977 5.02278 5.06297 5.13972 5.21793 5.37291 5.43350 5.52145 5.62712 6.19427 6.50478 6.67249 7.14462 7.29991 8.69545 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.021416 B = 0.006617 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.128476 B = 4230.551803 C = 4978.951974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C -0.138 4.138 4 C 0.033 3.967 5 N -0.653 5.653 6 C 0.028 3.972 7 H 0.144 0.856 8 C 0.508 3.492 9 O -0.575 6.575 10 N -0.699 5.699 11 C 0.254 3.746 12 H 0.045 0.955 13 C -0.560 4.560 14 H 0.094 0.906 15 C 0.015 3.985 16 N -0.876 5.876 17 Si 0.982 3.018 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.255 1.255 21 C 0.412 3.588 22 F -0.203 7.203 23 F -0.221 7.221 24 F -0.151 7.151 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.340 0.660 34 H 0.413 0.587 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.152 -3.290 -12.013 14.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.106 4.106 3 C -0.195 4.195 4 C -0.096 4.096 5 N -0.282 5.282 6 C -0.086 4.086 7 H 0.161 0.839 8 C 0.295 3.705 9 O -0.454 6.454 10 N -0.350 5.350 11 C 0.146 3.854 12 H 0.063 0.937 13 C -0.596 4.596 14 H 0.112 0.888 15 C -0.191 4.191 16 N -0.510 5.510 17 Si 0.806 3.194 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.178 1.178 21 C 0.356 3.644 22 F -0.185 7.185 23 F -0.203 7.203 24 F -0.132 7.132 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.139 0.861 32 H 0.107 0.893 33 H 0.157 0.843 34 H 0.250 0.750 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.068 -3.951 -11.840 14.344 hybrid contribution -0.199 1.257 1.231 1.770 sum -7.267 -2.694 -10.609 13.139 Atomic orbital electron populations 1.21803 0.91235 1.03593 1.02862 1.23373 0.98621 0.94874 0.93715 1.21695 1.00142 0.95179 1.02504 1.23977 0.94321 0.97299 0.94047 1.65359 1.06042 1.54368 1.02453 1.23613 0.96224 0.98552 0.90193 0.83868 1.21241 0.86884 0.78361 0.84023 1.90673 1.16684 1.58260 1.79818 1.45890 1.11851 1.57474 1.19737 1.19296 0.96751 0.87249 0.82068 0.93684 1.21218 0.97404 1.25368 1.15626 0.88829 1.26011 0.98050 0.98115 0.96895 1.70535 1.19512 1.36981 1.23946 0.85173 0.78223 0.77449 0.78596 1.19988 1.20895 1.17826 1.23377 0.74656 0.81554 0.84861 1.92985 1.57659 1.77267 1.90554 1.93065 1.67172 1.76153 1.83867 1.93378 1.84930 1.77626 1.57278 0.92409 0.90692 0.90299 0.93756 0.89249 0.93779 0.86116 0.89260 0.84337 0.75039 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.21 71.98 0.66 -1.48 16 2 C -0.10 -2.19 1.35 -51.54 -0.07 -2.26 16 3 C -0.14 -3.38 8.26 71.98 0.59 -2.79 16 4 C 0.03 0.61 8.00 86.36 0.69 1.30 16 5 N -0.65 -17.90 8.43 -502.25 -4.23 -22.13 16 6 C 0.03 0.77 4.26 44.27 0.19 0.96 16 7 H 0.14 3.43 8.10 -2.39 -0.02 3.41 16 8 C 0.51 19.56 5.28 87.66 0.46 20.02 16 9 O -0.58 -27.24 14.56 -3.02 -0.04 -27.29 16 10 N -0.70 -27.69 4.99 -446.10 -2.22 -29.91 16 11 C 0.25 12.62 2.21 44.25 0.10 12.72 16 12 H 0.05 2.60 7.58 -2.39 -0.02 2.58 16 13 C -0.56 -27.79 8.47 25.60 0.22 -27.57 16 14 H 0.09 4.24 7.74 -2.91 -0.02 4.21 16 15 C 0.01 0.74 5.20 84.66 0.44 1.18 16 16 N -0.88 -48.51 9.50 21.45 0.20 -48.30 16 17 Si 0.98 39.98 29.54 68.60 2.03 42.01 16 18 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 21 C 0.41 21.53 2.81 71.98 0.20 21.73 16 22 F -0.20 -9.99 16.94 44.97 0.76 -9.23 16 23 F -0.22 -11.64 15.68 44.97 0.70 -10.94 16 24 F -0.15 -8.59 12.91 44.97 0.58 -8.01 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 26 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.08 0.97 7.94 -2.39 -0.02 0.95 16 28 H 0.04 1.20 7.40 -2.39 -0.02 1.18 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.04 1.33 7.46 -2.38 -0.02 1.31 16 31 H 0.12 1.73 7.96 -2.39 -0.02 1.72 16 32 H 0.09 1.42 8.10 -2.39 -0.02 1.40 16 33 H 0.34 10.53 7.07 -89.69 -0.63 9.90 16 34 H 0.41 13.70 8.54 -92.71 -0.79 12.91 16 35 H 0.27 14.11 8.31 -92.70 -0.77 13.34 16 Total: -1.00 -64.51 299.51 0.98 -63.54 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: -0.29 Total: 26.47 kcal Atomic # 6 Polarization: 20.32 SS G_CDS: 3.49 Total: 23.80 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -6.25 Total: -100.35 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.04 Total: -27.29 kcal Atomic # 9 Polarization: -30.23 SS G_CDS: 2.05 Total: -28.18 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -64.51 0.98 -63.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573612898.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.562 kcal (2) G-P(sol) polarization free energy of solvation -64.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds