Wall clock time and date at job start Tue Mar 31 2020 02:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 112.94052 * 2 1 4 4 C 1.53941 * 113.73180 * 228.29688 * 2 1 3 5 5 N 1.47962 * 86.17784 * 221.92046 * 4 2 1 6 6 C 1.47960 * 90.76537 * 24.68954 * 5 4 2 7 7 H 1.09002 * 113.76002 * 220.99375 * 6 5 4 8 8 C 1.50699 * 113.85907 * 89.64045 * 6 5 4 9 9 O 1.21279 * 120.00382 * 1.40765 * 8 6 5 10 10 N 1.34783 * 119.99810 * 181.41403 * 8 6 5 11 11 C 1.46506 * 119.99647 * 179.97438 * 10 8 6 12 12 H 1.08998 * 109.47252 * 34.99804 * 11 10 8 13 13 C 1.50697 * 109.46673 * 154.99612 * 11 10 8 14 14 H 1.07998 * 120.00403 * 0.02562 * 13 11 10 15 15 C 1.37877 * 119.99839 * 179.97438 * 13 11 10 16 16 N 1.31519 * 120.00134 * 0.02562 * 15 13 11 17 17 Si 1.86806 * 120.00171 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.46822 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46791 * 120.00313 * 17 15 13 20 20 H 1.48498 * 109.46862 * 239.99970 * 17 15 13 21 21 C 1.52999 * 109.46979 * 274.99435 * 11 10 8 22 22 F 1.39904 * 109.46804 * 60.00719 * 21 11 10 23 23 F 1.39899 * 109.46787 * 179.97438 * 21 11 10 24 24 F 1.39893 * 109.47315 * 300.00292 * 21 11 10 25 25 H 1.09001 * 109.47073 * 288.43002 * 1 2 3 26 26 H 1.09000 * 109.46871 * 48.43497 * 1 2 3 27 27 H 1.09003 * 109.47177 * 168.42836 * 1 2 3 28 28 H 1.08998 * 109.47176 * 191.56858 * 3 2 1 29 29 H 1.08995 * 109.46870 * 311.57048 * 3 2 1 30 30 H 1.08994 * 109.46644 * 71.56871 * 3 2 1 31 31 H 1.09001 * 113.75845 * 336.23623 * 4 2 1 32 32 H 1.08995 * 113.76008 * 107.60829 * 4 2 1 33 33 H 1.00901 * 111.00142 * 271.79554 * 5 4 2 34 34 H 0.96996 * 120.00265 * 359.97438 * 10 8 6 35 35 H 0.97001 * 119.99981 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1264 1.4090 0.0000 4 6 2.1495 -0.9375 -1.0521 5 7 3.1154 -1.3197 0.0015 6 6 2.1496 -0.9350 1.0543 7 1 2.6025 -0.4097 1.8951 8 6 1.2374 -2.0552 1.4834 9 8 1.3557 -3.1566 0.9897 10 7 0.2900 -1.8330 2.4160 11 6 -0.5972 -2.9218 2.8328 12 1 -0.0463 -3.8624 2.8254 13 6 -1.1072 -2.6494 4.2244 14 1 -0.8015 -1.7545 4.7460 15 6 -1.9650 -3.5420 4.8313 16 7 -2.3377 -4.6316 4.1960 17 14 -2.5978 -3.2040 6.5561 18 1 -2.0340 -1.9212 7.0476 19 1 -4.0799 -3.1156 6.5310 20 1 -2.1829 -4.3064 7.4604 21 6 -1.7790 -3.0153 1.8656 22 9 -1.3055 -3.2683 0.5737 23 9 -2.6258 -4.0554 2.2633 24 9 -2.4860 -1.8082 1.8752 25 1 -0.3633 0.3249 0.9750 26 1 -0.3633 0.6818 -0.7689 27 1 -0.3634 -1.0068 -0.2061 28 1 3.1951 1.3512 -0.2061 29 1 1.6400 2.0093 -0.7688 30 1 1.9687 1.8702 0.9749 31 1 1.4904 -1.7496 -1.3592 32 1 2.6025 -0.4143 -1.8942 33 1 3.9142 -0.7032 0.0008 34 1 0.1955 -0.9522 2.8111 35 1 -2.9408 -5.2598 4.6231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573612899.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:19 Heat of formation + Delta-G solvation = -140.031545 kcal Electronic energy + Delta-G solvation = -24091.968290 eV Core-core repulsion = 20097.850501 eV Total energy + Delta-G solvation = -3994.117789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.35216 -46.00423 -45.61177 -40.78345 -37.81319 -34.59381 -32.59448 -31.55159 -28.99281 -27.48607 -26.32978 -24.55973 -23.97911 -21.67537 -20.15660 -18.78774 -17.11188 -16.95145 -16.63534 -16.60104 -16.09255 -15.46156 -14.88341 -14.65659 -14.40714 -13.97969 -13.95150 -13.17092 -12.96239 -12.88139 -12.47973 -12.39459 -12.30672 -12.28308 -12.19108 -11.98256 -11.88367 -11.78822 -11.33938 -11.18540 -10.92266 -10.87951 -10.79462 -10.41814 -10.30512 -9.64196 -9.23291 -8.73105 -8.31386 -8.21738 -6.24199 -4.48100 3.14303 3.17896 3.24525 3.27648 3.61487 4.15449 4.23157 4.28527 4.55256 4.75146 4.92743 4.96371 5.20090 5.41287 5.46284 5.53940 5.55381 5.72464 5.80121 5.85815 5.88224 5.95247 6.00543 6.08978 6.15200 6.22899 6.43330 6.95326 7.20305 7.36034 7.48819 7.62979 8.36592 8.50804 8.96403 9.20225 10.67455 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.026642 B = 0.006260 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.721585 B = 4471.996934 C = 4708.479691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C -0.130 4.130 4 C 0.029 3.971 5 N -0.630 5.630 6 C 0.031 3.969 7 H 0.100 0.900 8 C 0.528 3.472 9 O -0.515 6.515 10 N -0.711 5.711 11 C 0.246 3.754 12 H 0.084 0.916 13 C -0.551 4.551 14 H 0.078 0.922 15 C 0.064 3.936 16 N -0.839 5.839 17 Si 0.915 3.085 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.418 3.582 22 F -0.218 7.218 23 F -0.137 7.137 24 F -0.209 7.209 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.336 0.664 34 H 0.396 0.604 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.718 10.895 -5.466 13.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.187 4.187 4 C -0.101 4.101 5 N -0.257 5.257 6 C -0.084 4.084 7 H 0.118 0.882 8 C 0.312 3.688 9 O -0.389 6.389 10 N -0.362 5.362 11 C 0.141 3.859 12 H 0.102 0.898 13 C -0.588 4.588 14 H 0.096 0.904 15 C -0.144 4.144 16 N -0.473 5.473 17 Si 0.741 3.259 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.205 1.205 21 C 0.362 3.638 22 F -0.200 7.200 23 F -0.119 7.119 24 F -0.191 7.191 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.090 0.910 33 H 0.151 0.849 34 H 0.230 0.770 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.741 9.011 -5.837 12.175 hybrid contribution -0.788 1.621 0.892 2.011 sum 4.953 10.632 -4.946 12.729 Atomic orbital electron populations 1.21870 0.92997 1.03047 1.02341 1.23497 0.97699 0.95497 0.95608 1.21638 1.00092 0.94207 1.02749 1.23850 0.94917 0.97110 0.94196 1.64778 1.05141 1.53905 1.01891 1.23099 0.94824 0.94031 0.96411 0.88209 1.19663 0.80840 0.88723 0.79610 1.90704 1.69802 1.24347 1.54042 1.46024 1.34117 1.14758 1.41252 1.19693 0.84476 0.89794 0.91955 0.89807 1.20916 1.31276 1.09196 0.97444 0.90437 1.25091 0.95346 0.94934 0.99064 1.70415 1.31530 1.09887 1.35444 0.86168 0.78649 0.78525 0.82545 1.19422 1.20575 1.20546 1.23134 0.87618 0.73621 0.79476 1.93062 1.88722 1.94226 1.43947 1.93404 1.72700 1.57095 1.88656 1.92982 1.81576 1.47937 1.96630 0.91807 0.92414 0.91450 0.92605 0.91617 0.91668 0.87945 0.91008 0.84898 0.77007 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.09 37.16 0.30 -1.71 16 2 C -0.12 -1.48 1.37 -153.57 -0.21 -1.70 16 3 C -0.13 -1.14 9.11 37.16 0.34 -0.80 16 4 C 0.03 0.38 7.66 -2.76 -0.02 0.36 16 5 N -0.63 -8.94 8.03 -110.93 -0.89 -9.83 16 6 C 0.03 0.45 4.37 -67.81 -0.30 0.15 16 7 H 0.10 1.23 8.10 -51.93 -0.42 0.81 16 8 C 0.53 10.44 5.21 -10.98 -0.06 10.38 16 9 O -0.51 -12.44 15.17 5.56 0.08 -12.36 16 10 N -0.71 -14.27 4.45 -54.93 -0.24 -14.52 16 11 C 0.25 6.07 2.21 -69.08 -0.15 5.92 16 12 H 0.08 2.35 7.58 -51.93 -0.39 1.95 16 13 C -0.55 -13.95 8.47 -34.44 -0.29 -14.24 16 14 H 0.08 1.85 7.74 -52.49 -0.41 1.44 16 15 C 0.06 1.67 5.20 -17.82 -0.09 1.58 16 16 N -0.84 -23.03 9.50 55.43 0.53 -22.51 16 17 Si 0.91 20.01 29.54 -169.99 -5.02 14.99 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 21 C 0.42 10.58 2.81 37.16 0.10 10.69 16 22 F -0.22 -5.46 15.27 2.25 0.03 -5.42 16 23 F -0.14 -3.81 12.91 2.25 0.03 -3.78 16 24 F -0.21 -5.04 16.94 2.25 0.04 -5.00 16 25 H 0.06 0.89 7.66 -51.93 -0.40 0.49 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.17 6.84 -51.93 -0.36 0.81 16 28 H 0.05 0.42 7.38 -51.93 -0.38 0.04 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 1.64 7.96 -51.93 -0.41 1.23 16 32 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 33 H 0.34 3.66 8.13 -39.29 -0.32 3.34 16 34 H 0.40 6.87 8.22 -40.82 -0.34 6.54 16 35 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 298.08 15.07 4.49 4.49 Total: -1.00 -30.40 298.08 -5.58 -35.98 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.25 Total: 7.32 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -0.38 Total: 10.63 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -0.61 Total: -46.85 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 9 Polarization: -14.30 SS G_CDS: 0.10 Total: -14.20 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.40 -5.58 -35.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573612899.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.048 kcal (2) G-P(sol) polarization free energy of solvation -30.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds