Wall clock time and date at job start Tue Mar 31 2020 02:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 112.94052 * 2 1 4 4 C 1.53941 * 113.73180 * 228.29688 * 2 1 3 5 5 N 1.47962 * 86.17784 * 221.92046 * 4 2 1 6 6 C 1.47960 * 90.76537 * 24.68954 * 5 4 2 7 7 H 1.09002 * 113.76002 * 220.99375 * 6 5 4 8 8 C 1.50699 * 113.85907 * 89.64045 * 6 5 4 9 9 O 1.21279 * 120.00382 * 1.40765 * 8 6 5 10 10 N 1.34783 * 119.99810 * 181.41403 * 8 6 5 11 11 C 1.46506 * 119.99647 * 179.97438 * 10 8 6 12 12 H 1.08998 * 109.47252 * 34.99804 * 11 10 8 13 13 C 1.50697 * 109.46673 * 154.99612 * 11 10 8 14 14 H 1.07998 * 120.00403 * 0.02562 * 13 11 10 15 15 C 1.37877 * 119.99839 * 179.97438 * 13 11 10 16 16 N 1.31519 * 120.00134 * 0.02562 * 15 13 11 17 17 Si 1.86806 * 120.00171 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.46822 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46791 * 120.00313 * 17 15 13 20 20 H 1.48498 * 109.46862 * 239.99970 * 17 15 13 21 21 C 1.52999 * 109.46979 * 274.99435 * 11 10 8 22 22 F 1.39904 * 109.46804 * 60.00719 * 21 11 10 23 23 F 1.39899 * 109.46787 * 179.97438 * 21 11 10 24 24 F 1.39893 * 109.47315 * 300.00292 * 21 11 10 25 25 H 1.09001 * 109.47073 * 288.43002 * 1 2 3 26 26 H 1.09000 * 109.46871 * 48.43497 * 1 2 3 27 27 H 1.09003 * 109.47177 * 168.42836 * 1 2 3 28 28 H 1.08998 * 109.47176 * 191.56858 * 3 2 1 29 29 H 1.08995 * 109.46870 * 311.57048 * 3 2 1 30 30 H 1.08994 * 109.46644 * 71.56871 * 3 2 1 31 31 H 1.09001 * 113.75845 * 336.23623 * 4 2 1 32 32 H 1.08995 * 113.76008 * 107.60829 * 4 2 1 33 33 H 1.00901 * 111.00142 * 271.79554 * 5 4 2 34 34 H 0.96996 * 120.00265 * 359.97438 * 10 8 6 35 35 H 0.97001 * 119.99981 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1264 1.4090 0.0000 4 6 2.1495 -0.9375 -1.0521 5 7 3.1154 -1.3197 0.0015 6 6 2.1496 -0.9350 1.0543 7 1 2.6025 -0.4097 1.8951 8 6 1.2374 -2.0552 1.4834 9 8 1.3557 -3.1566 0.9897 10 7 0.2900 -1.8330 2.4160 11 6 -0.5972 -2.9218 2.8328 12 1 -0.0463 -3.8624 2.8254 13 6 -1.1072 -2.6494 4.2244 14 1 -0.8015 -1.7545 4.7460 15 6 -1.9650 -3.5420 4.8313 16 7 -2.3377 -4.6316 4.1960 17 14 -2.5978 -3.2040 6.5561 18 1 -2.0340 -1.9212 7.0476 19 1 -4.0799 -3.1156 6.5310 20 1 -2.1829 -4.3064 7.4604 21 6 -1.7790 -3.0153 1.8656 22 9 -1.3055 -3.2683 0.5737 23 9 -2.6258 -4.0554 2.2633 24 9 -2.4860 -1.8082 1.8752 25 1 -0.3633 0.3249 0.9750 26 1 -0.3633 0.6818 -0.7689 27 1 -0.3634 -1.0068 -0.2061 28 1 3.1951 1.3512 -0.2061 29 1 1.6400 2.0093 -0.7688 30 1 1.9687 1.8702 0.9749 31 1 1.4904 -1.7496 -1.3592 32 1 2.6025 -0.4143 -1.8942 33 1 3.9142 -0.7032 0.0008 34 1 0.1955 -0.9522 2.8111 35 1 -2.9408 -5.2598 4.6231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573612899.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:18 Heat of formation + Delta-G solvation = -163.324295 kcal Electronic energy + Delta-G solvation = -24092.978339 eV Core-core repulsion = 20097.850501 eV Total energy + Delta-G solvation = -3995.127839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.42175 -48.04946 -47.73515 -41.99912 -39.34928 -36.44013 -34.47337 -32.58683 -30.76510 -28.38738 -27.67185 -26.55808 -25.14430 -23.47297 -21.76619 -20.21425 -18.95472 -18.87773 -18.63965 -17.93339 -17.87169 -16.87035 -16.78233 -15.95272 -15.79716 -15.29116 -15.21090 -14.94933 -14.81783 -14.47957 -14.41389 -14.32877 -14.17129 -14.03843 -13.88862 -13.22877 -13.12171 -13.04482 -12.76057 -12.72322 -12.65994 -12.40592 -12.20855 -11.94125 -11.55528 -11.36706 -10.79750 -10.70644 -10.02255 -9.42791 -8.21990 -6.53111 1.45446 1.46436 1.59702 1.64885 2.10890 2.37734 2.53466 2.93416 3.07833 3.21753 3.60053 3.78840 3.88110 3.99874 4.09555 4.21426 4.31052 4.45056 4.59373 4.73171 4.86643 4.89933 4.94571 4.96693 5.00670 5.07982 5.26413 5.35532 5.43487 5.55231 5.64900 6.46987 6.52471 6.78122 7.16927 7.42264 8.71046 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.026642 B = 0.006260 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.721585 B = 4471.996934 C = 4708.479691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 C -0.123 4.123 4 C 0.026 3.974 5 N -0.650 5.650 6 C 0.029 3.971 7 H 0.133 0.867 8 C 0.523 3.477 9 O -0.568 6.568 10 N -0.701 5.701 11 C 0.254 3.746 12 H 0.041 0.959 13 C -0.560 4.560 14 H 0.094 0.906 15 C 0.013 3.987 16 N -0.877 5.877 17 Si 0.984 3.016 18 H -0.253 1.253 19 H -0.281 1.281 20 H -0.278 1.278 21 C 0.416 3.584 22 F -0.220 7.220 23 F -0.153 7.153 24 F -0.201 7.201 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.023 0.977 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.358 0.642 34 H 0.412 0.588 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.733 13.989 -4.806 16.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 C -0.180 4.180 4 C -0.104 4.104 5 N -0.280 5.280 6 C -0.085 4.085 7 H 0.151 0.849 8 C 0.309 3.691 9 O -0.445 6.445 10 N -0.353 5.353 11 C 0.146 3.854 12 H 0.059 0.941 13 C -0.597 4.597 14 H 0.112 0.888 15 C -0.192 4.192 16 N -0.511 5.511 17 Si 0.807 3.193 18 H -0.176 1.176 19 H -0.207 1.207 20 H -0.204 1.204 21 C 0.360 3.640 22 F -0.202 7.202 23 F -0.134 7.134 24 F -0.183 7.183 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.042 0.958 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.124 0.876 33 H 0.177 0.823 34 H 0.248 0.752 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.788 12.165 -5.179 14.863 hybrid contribution -1.085 0.614 0.604 1.386 sum 5.703 12.780 -4.575 14.723 Atomic orbital electron populations 1.21856 0.94553 1.00883 1.03005 1.23451 0.96326 0.97101 0.93345 1.21647 1.01072 0.91194 1.04049 1.23776 0.94620 0.96448 0.95529 1.64609 1.06031 1.55497 1.01861 1.23038 0.94726 0.92502 0.98276 0.84947 1.20677 0.80670 0.89486 0.78252 1.90674 1.71236 1.27017 1.55592 1.45856 1.33612 1.14325 1.41517 1.19257 0.84363 0.89582 0.92176 0.94123 1.21272 1.31078 1.09697 0.97605 0.88805 1.26036 0.95530 0.94575 1.03065 1.70554 1.32277 1.10962 1.37299 0.85105 0.77727 0.78964 0.77497 1.17640 1.20689 1.20404 1.23240 0.87758 0.73463 0.79540 1.93059 1.88724 1.94274 1.44095 1.93371 1.73244 1.57949 1.88862 1.92981 1.81422 1.47250 1.96610 0.91835 0.90238 0.95761 0.90704 0.90256 0.90470 0.91990 0.87640 0.82328 0.75180 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 8.09 71.98 0.58 -3.26 16 2 C -0.10 -2.20 1.37 -51.53 -0.07 -2.27 16 3 C -0.12 -1.57 9.11 71.98 0.66 -0.92 16 4 C 0.03 0.65 7.66 86.41 0.66 1.31 16 5 N -0.65 -17.26 8.03 -504.87 -4.06 -21.32 16 6 C 0.03 0.78 4.37 44.27 0.19 0.98 16 7 H 0.13 2.78 8.10 -2.39 -0.02 2.76 16 8 C 0.52 20.90 5.21 87.66 0.46 21.36 16 9 O -0.57 -28.66 15.17 -3.03 -0.05 -28.71 16 10 N -0.70 -28.32 4.45 -446.09 -1.99 -30.31 16 11 C 0.25 12.85 2.21 44.24 0.10 12.95 16 12 H 0.04 2.42 7.58 -2.39 -0.02 2.40 16 13 C -0.56 -28.29 8.47 25.60 0.22 -28.07 16 14 H 0.09 4.33 7.74 -2.91 -0.02 4.31 16 15 C 0.01 0.67 5.20 84.65 0.44 1.11 16 16 N -0.88 -49.24 9.50 21.45 0.20 -49.04 16 17 Si 0.98 40.52 29.54 68.60 2.03 42.55 16 18 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 19 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 21 C 0.42 21.75 2.81 71.98 0.20 21.95 16 22 F -0.22 -11.53 15.27 44.97 0.69 -10.85 16 23 F -0.15 -8.78 12.91 44.97 0.58 -8.20 16 24 F -0.20 -9.75 16.94 44.97 0.76 -8.99 16 25 H 0.06 1.66 7.66 -2.39 -0.02 1.64 16 26 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.02 0.84 6.84 -2.39 -0.02 0.82 16 28 H 0.07 0.72 7.38 -2.39 -0.02 0.71 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 2.06 7.96 -2.39 -0.02 2.04 16 32 H 0.11 1.88 8.10 -2.39 -0.02 1.86 16 33 H 0.36 6.63 8.13 -89.69 -0.73 5.90 16 34 H 0.41 13.82 8.22 -92.71 -0.76 13.06 16 35 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -69.06 298.08 1.26 -67.80 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -0.35 Total: 21.92 kcal Atomic # 6 Polarization: 21.71 SS G_CDS: 3.44 Total: 25.14 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -5.84 Total: -100.67 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.05 Total: -28.71 kcal Atomic # 9 Polarization: -30.07 SS G_CDS: 2.03 Total: -28.04 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -69.06 1.26 -67.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573612899.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.521 kcal (2) G-P(sol) polarization free energy of solvation -69.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds