Wall clock time and date at job start Tue Mar 31 2020 02:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 113.38127 * 2 1 4 4 C 1.53631 * 114.17621 * 226.87069 * 2 1 3 5 5 N 1.47487 * 87.94952 * 272.35153 * 4 2 1 6 6 C 1.47481 * 87.83334 * 333.03622 * 5 4 2 7 7 H 1.08997 * 113.48274 * 272.18349 * 6 5 4 8 8 C 1.50703 * 113.47386 * 141.78070 * 6 5 4 9 9 O 1.21290 * 119.99977 * 0.43416 * 8 6 5 10 10 N 1.34771 * 120.00516 * 180.44202 * 8 6 5 11 11 C 1.46499 * 120.00694 * 180.02562 * 10 8 6 12 12 H 1.09007 * 109.46342 * 324.99575 * 11 10 8 13 13 C 1.50701 * 109.47260 * 204.99997 * 11 10 8 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 11 10 15 15 C 1.37871 * 119.99694 * 180.27562 * 13 11 10 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 C 1.52998 * 109.47185 * 84.99510 * 11 10 8 22 22 F 1.39901 * 109.47038 * 180.02562 * 21 11 10 23 23 F 1.39903 * 109.47186 * 299.99909 * 21 11 10 24 24 F 1.39898 * 109.47149 * 60.00364 * 21 11 10 25 25 H 1.09000 * 109.47567 * 286.92234 * 1 2 3 26 26 H 1.09009 * 109.47124 * 46.92424 * 1 2 3 27 27 H 1.09005 * 109.46758 * 166.91981 * 1 2 3 28 28 H 1.08997 * 109.46995 * 193.07067 * 3 2 1 29 29 H 1.08993 * 109.47120 * 313.07335 * 3 2 1 30 30 H 1.09008 * 109.46870 * 73.07910 * 3 2 1 31 31 H 1.08992 * 113.42502 * 157.58252 * 4 2 1 32 32 H 1.08999 * 113.51433 * 27.12718 * 4 2 1 33 33 H 1.00896 * 111.00350 * 84.73394 * 5 4 2 34 34 H 0.97006 * 119.99365 * 359.97438 * 10 8 6 35 35 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1372 1.4044 0.0000 4 6 2.1592 -0.9582 -1.0229 5 7 2.0824 -2.0170 0.0010 6 6 2.1585 -0.9565 1.0231 7 1 3.1793 -0.6898 1.2970 8 6 1.2821 -1.2139 2.2217 9 8 0.6110 -2.2227 2.2768 10 7 1.2438 -0.3232 3.2324 11 6 0.3923 -0.5737 4.3979 12 1 -0.5191 -1.0801 4.0797 13 6 0.0368 0.7369 5.0513 14 1 0.4085 1.6637 4.6398 15 6 -0.7577 0.7522 6.1780 16 7 -1.2099 -0.3764 6.6792 17 14 -1.1919 2.3763 6.9925 18 1 -2.4476 2.9058 6.4026 19 1 -1.3808 2.1641 8.4501 20 1 -0.0926 3.3500 6.7724 21 6 1.1430 -1.4553 5.3980 22 9 0.3295 -1.6949 6.5107 23 9 1.4729 -2.6720 4.7913 24 9 2.3127 -0.8054 5.8062 25 1 -0.3634 0.2991 0.9831 26 1 -0.3634 0.7019 -0.7507 27 1 -0.3633 -1.0011 -0.2326 28 1 3.2002 1.3406 -0.2324 29 1 1.6372 2.0164 -0.7506 30 1 2.0068 1.8566 0.9833 31 1 3.1800 -0.6912 -1.2958 32 1 1.5257 -1.1459 -1.8899 33 1 1.1733 -2.4547 0.0011 34 1 1.7808 0.4835 3.1884 35 1 -1.7686 -0.3656 7.4721 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573612900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:22 Heat of formation + Delta-G solvation = -143.578711 kcal Electronic energy + Delta-G solvation = -23810.577009 eV Core-core repulsion = 19816.305402 eV Total energy + Delta-G solvation = -3994.271606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.36267 -46.01695 -45.62892 -40.96745 -37.98807 -34.70548 -32.64171 -31.63176 -28.99095 -27.57563 -26.35263 -24.57780 -23.93790 -21.70868 -20.12887 -18.77440 -17.80260 -16.90243 -16.73297 -16.62452 -15.80014 -15.33355 -15.05111 -14.79683 -14.46481 -13.84941 -13.75063 -13.32401 -12.96321 -12.73166 -12.69384 -12.43667 -12.38651 -12.30500 -12.12618 -11.99780 -11.93363 -11.83261 -11.55430 -11.22497 -11.02918 -10.88146 -10.83771 -10.49692 -10.43877 -9.71542 -9.14866 -8.75884 -8.61498 -8.31115 -6.27428 -4.51838 3.03556 3.15249 3.21922 3.24587 3.71458 4.12738 4.17763 4.23026 4.55109 4.66144 4.89604 4.99484 5.18043 5.29581 5.46986 5.52878 5.62686 5.73889 5.80289 5.84927 5.85398 5.87064 5.94453 5.98450 6.18012 6.21910 6.25733 6.88587 7.11534 7.31481 7.42311 7.58958 8.26009 8.45248 8.81124 9.16176 10.64007 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.021407 B = 0.006638 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.667223 B = 4217.159972 C = 4963.898113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C -0.138 4.138 4 C 0.018 3.982 5 N -0.627 5.627 6 C 0.027 3.973 7 H 0.124 0.876 8 C 0.508 3.492 9 O -0.532 6.532 10 N -0.706 5.706 11 C 0.245 3.755 12 H 0.084 0.916 13 C -0.552 4.552 14 H 0.077 0.923 15 C 0.065 3.935 16 N -0.839 5.839 17 Si 0.915 3.085 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.270 1.270 21 C 0.416 3.584 22 F -0.137 7.137 23 F -0.217 7.217 24 F -0.209 7.209 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.349 0.651 34 H 0.398 0.602 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.789 3.818 -10.785 12.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 C -0.195 4.195 4 C -0.112 4.112 5 N -0.257 5.257 6 C -0.087 4.087 7 H 0.142 0.858 8 C 0.293 3.707 9 O -0.409 6.409 10 N -0.356 5.356 11 C 0.139 3.861 12 H 0.102 0.898 13 C -0.589 4.589 14 H 0.095 0.905 15 C -0.144 4.144 16 N -0.472 5.472 17 Si 0.741 3.259 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.195 1.195 21 C 0.360 3.640 22 F -0.118 7.118 23 F -0.199 7.199 24 F -0.191 7.191 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.168 0.832 34 H 0.232 0.768 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.914 2.476 -10.544 11.893 hybrid contribution -0.640 1.496 0.796 1.811 sum 4.274 3.971 -9.748 11.360 Atomic orbital electron populations 1.21660 0.92051 1.02267 1.03412 1.23302 0.96906 0.96285 0.95578 1.21738 1.00355 0.94798 1.02657 1.23715 1.01324 0.90895 0.95252 1.65669 1.38492 1.19638 1.01879 1.23442 1.00399 0.93089 0.91775 0.85800 1.20459 0.82783 0.83559 0.83913 1.90702 1.43641 1.26888 1.79622 1.46052 1.46729 1.23560 1.19238 1.19719 0.89157 0.96701 0.80480 0.89830 1.20863 1.34093 0.90711 1.13267 0.90466 1.25085 0.95333 0.97666 0.96326 1.70403 1.30007 1.24937 1.21844 0.86222 0.78950 0.82225 0.78506 1.20196 1.20756 1.19499 1.23137 0.77682 0.78576 0.84593 1.93407 1.70174 1.94333 1.53866 1.93078 1.93509 1.49483 1.83838 1.92987 1.52297 1.81885 1.91951 0.90902 0.91707 0.92291 0.92127 0.92155 0.91707 0.88407 0.91038 0.83234 0.76791 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.40 37.16 0.31 -1.42 16 2 C -0.12 -1.39 1.43 -153.91 -0.22 -1.61 16 3 C -0.14 -1.32 9.30 37.16 0.35 -0.98 16 4 C 0.02 0.20 7.74 -7.48 -0.06 0.14 16 5 N -0.63 -9.04 8.58 -116.45 -1.00 -10.04 16 6 C 0.03 0.39 4.02 -72.58 -0.29 0.10 16 7 H 0.12 1.64 8.10 -51.93 -0.42 1.22 16 8 C 0.51 9.74 5.32 -10.99 -0.06 9.68 16 9 O -0.53 -12.20 14.59 5.55 0.08 -12.12 16 10 N -0.71 -13.99 4.98 -54.93 -0.27 -14.27 16 11 C 0.25 5.98 2.21 -69.08 -0.15 5.83 16 12 H 0.08 2.29 7.58 -51.93 -0.39 1.89 16 13 C -0.55 -13.78 8.47 -34.44 -0.29 -14.07 16 14 H 0.08 1.81 7.74 -52.49 -0.41 1.40 16 15 C 0.06 1.66 5.20 -17.82 -0.09 1.57 16 16 N -0.84 -22.81 9.49 55.43 0.53 -22.28 16 17 Si 0.91 19.80 29.54 -169.99 -5.02 14.78 16 18 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 21 C 0.42 10.69 2.80 37.16 0.10 10.80 16 22 F -0.14 -3.79 12.90 2.25 0.03 -3.76 16 23 F -0.22 -5.60 15.68 2.25 0.04 -5.57 16 24 F -0.21 -5.17 16.94 2.25 0.04 -5.13 16 25 H 0.07 1.10 7.44 -51.93 -0.39 0.71 16 26 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.06 0.78 7.21 -51.93 -0.37 0.41 16 28 H 0.06 0.50 7.90 -51.93 -0.41 0.09 16 29 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 30 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 31 H 0.10 0.93 7.93 -51.93 -0.41 0.51 16 32 H 0.07 0.69 8.12 -51.93 -0.42 0.26 16 33 H 0.35 5.40 6.92 -39.29 -0.27 5.13 16 34 H 0.40 6.82 8.54 -40.82 -0.35 6.47 16 35 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 299.12 15.07 4.51 4.51 Total: -1.00 -29.40 299.12 -5.73 -35.13 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -4.25 Total: 8.73 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -0.40 Total: 10.04 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -0.75 Total: -46.59 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.08 Total: -12.12 kcal Atomic # 9 Polarization: -14.57 SS G_CDS: 0.10 Total: -14.46 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.40 -5.73 -35.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573612900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.452 kcal (2) G-P(sol) polarization free energy of solvation -29.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds