Wall clock time and date at job start Tue Mar 31 2020 02:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 113.38127 * 2 1 4 4 C 1.53631 * 114.17621 * 226.87069 * 2 1 3 5 5 N 1.47487 * 87.94952 * 272.35153 * 4 2 1 6 6 C 1.47481 * 87.83334 * 333.03622 * 5 4 2 7 7 H 1.08997 * 113.48274 * 272.18349 * 6 5 4 8 8 C 1.50703 * 113.47386 * 141.78070 * 6 5 4 9 9 O 1.21290 * 119.99977 * 0.43416 * 8 6 5 10 10 N 1.34771 * 120.00516 * 180.44202 * 8 6 5 11 11 C 1.46499 * 120.00694 * 180.02562 * 10 8 6 12 12 H 1.09007 * 109.46342 * 324.99575 * 11 10 8 13 13 C 1.50701 * 109.47260 * 204.99997 * 11 10 8 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 11 10 15 15 C 1.37871 * 119.99694 * 180.27562 * 13 11 10 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 C 1.52998 * 109.47185 * 84.99510 * 11 10 8 22 22 F 1.39901 * 109.47038 * 180.02562 * 21 11 10 23 23 F 1.39903 * 109.47186 * 299.99909 * 21 11 10 24 24 F 1.39898 * 109.47149 * 60.00364 * 21 11 10 25 25 H 1.09000 * 109.47567 * 286.92234 * 1 2 3 26 26 H 1.09009 * 109.47124 * 46.92424 * 1 2 3 27 27 H 1.09005 * 109.46758 * 166.91981 * 1 2 3 28 28 H 1.08997 * 109.46995 * 193.07067 * 3 2 1 29 29 H 1.08993 * 109.47120 * 313.07335 * 3 2 1 30 30 H 1.09008 * 109.46870 * 73.07910 * 3 2 1 31 31 H 1.08992 * 113.42502 * 157.58252 * 4 2 1 32 32 H 1.08999 * 113.51433 * 27.12718 * 4 2 1 33 33 H 1.00896 * 111.00350 * 84.73394 * 5 4 2 34 34 H 0.97006 * 119.99365 * 359.97438 * 10 8 6 35 35 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1372 1.4044 0.0000 4 6 2.1592 -0.9582 -1.0229 5 7 2.0824 -2.0170 0.0010 6 6 2.1585 -0.9565 1.0231 7 1 3.1793 -0.6898 1.2970 8 6 1.2821 -1.2139 2.2217 9 8 0.6110 -2.2227 2.2768 10 7 1.2438 -0.3232 3.2324 11 6 0.3923 -0.5737 4.3979 12 1 -0.5191 -1.0801 4.0797 13 6 0.0368 0.7369 5.0513 14 1 0.4085 1.6637 4.6398 15 6 -0.7577 0.7522 6.1780 16 7 -1.2099 -0.3764 6.6792 17 14 -1.1919 2.3763 6.9925 18 1 -2.4476 2.9058 6.4026 19 1 -1.3808 2.1641 8.4501 20 1 -0.0926 3.3500 6.7724 21 6 1.1430 -1.4553 5.3980 22 9 0.3295 -1.6949 6.5107 23 9 1.4729 -2.6720 4.7913 24 9 2.3127 -0.8054 5.8062 25 1 -0.3634 0.2991 0.9831 26 1 -0.3634 0.7019 -0.7507 27 1 -0.3633 -1.0011 -0.2326 28 1 3.2002 1.3406 -0.2324 29 1 1.6372 2.0164 -0.7506 30 1 2.0068 1.8566 0.9833 31 1 3.1800 -0.6912 -1.2958 32 1 1.5257 -1.1459 -1.8899 33 1 1.1733 -2.4547 0.0011 34 1 1.7808 0.4835 3.1884 35 1 -1.7686 -0.3656 7.4721 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573612900.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:21 Heat of formation + Delta-G solvation = -165.908110 kcal Electronic energy + Delta-G solvation = -23811.545284 eV Core-core repulsion = 19816.305402 eV Total energy + Delta-G solvation = -3995.239881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.44850 -48.08650 -47.75702 -42.13949 -39.48024 -36.51210 -34.49945 -32.59991 -30.77409 -28.48562 -27.68098 -26.56818 -24.91721 -23.50690 -21.74876 -20.02762 -19.28272 -18.90297 -18.71842 -18.46358 -17.58948 -16.98815 -16.50688 -16.29819 -15.48648 -15.26317 -15.01765 -14.87038 -14.76836 -14.55151 -14.49329 -14.32574 -14.08974 -14.01486 -13.90077 -13.61292 -13.07340 -12.98433 -12.96323 -12.77422 -12.62650 -12.36565 -12.24235 -11.99364 -11.61514 -11.50147 -10.69855 -10.64625 -10.10519 -9.64692 -8.23093 -6.54231 1.44930 1.46156 1.55158 1.57928 2.15291 2.37956 2.50809 2.91902 3.11060 3.18281 3.57106 3.74340 3.81849 3.93262 4.07601 4.18791 4.33628 4.53687 4.64714 4.71528 4.82264 4.84960 4.96596 5.02522 5.05945 5.13346 5.22347 5.37768 5.44060 5.52379 5.62828 6.17098 6.50603 6.67855 7.14662 7.30744 8.69556 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.021407 B = 0.006638 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.667223 B = 4217.159972 C = 4963.898113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 C -0.135 4.135 4 C 0.029 3.971 5 N -0.645 5.645 6 C 0.026 3.974 7 H 0.144 0.856 8 C 0.505 3.495 9 O -0.576 6.576 10 N -0.699 5.699 11 C 0.253 3.747 12 H 0.045 0.955 13 C -0.559 4.559 14 H 0.094 0.906 15 C 0.014 3.986 16 N -0.876 5.876 17 Si 0.982 3.018 18 H -0.270 1.270 19 H -0.286 1.286 20 H -0.257 1.257 21 C 0.412 3.588 22 F -0.151 7.151 23 F -0.221 7.221 24 F -0.203 7.203 25 H 0.042 0.958 26 H 0.089 0.911 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.121 0.879 32 H 0.087 0.913 33 H 0.340 0.660 34 H 0.413 0.587 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.039 6.061 -12.284 14.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.109 4.109 3 C -0.193 4.193 4 C -0.101 4.101 5 N -0.274 5.274 6 C -0.088 4.088 7 H 0.162 0.838 8 C 0.293 3.707 9 O -0.455 6.455 10 N -0.350 5.350 11 C 0.146 3.854 12 H 0.063 0.937 13 C -0.596 4.596 14 H 0.112 0.888 15 C -0.191 4.191 16 N -0.510 5.510 17 Si 0.805 3.195 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.181 1.181 21 C 0.356 3.644 22 F -0.132 7.132 23 F -0.203 7.203 24 F -0.185 7.185 25 H 0.061 0.939 26 H 0.108 0.892 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.139 0.861 32 H 0.105 0.895 33 H 0.157 0.843 34 H 0.249 0.751 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.202 4.749 -12.076 14.383 hybrid contribution -1.026 0.728 1.223 1.754 sum 5.176 5.477 -10.854 13.214 Atomic orbital electron populations 1.21648 0.93177 1.02108 1.02381 1.23239 0.95947 0.97508 0.94224 1.21755 1.01571 0.93088 1.02866 1.23828 1.02860 0.88681 0.94705 1.65719 1.37883 1.20748 1.03093 1.23639 1.00424 0.94762 0.89927 0.83831 1.21358 0.82434 0.82391 0.84564 1.90676 1.45570 1.28714 1.80537 1.45904 1.46351 1.24482 1.18248 1.19293 0.88460 0.96054 0.81595 0.93729 1.21217 1.33876 0.91253 1.13246 0.88828 1.26011 0.95104 1.00975 0.97006 1.70537 1.30875 1.27233 1.22318 0.85176 0.79131 0.78157 0.77001 1.19481 1.21143 1.18060 1.23383 0.77839 0.78679 0.84541 1.93380 1.70681 1.94454 1.54685 1.93066 1.93535 1.49846 1.83840 1.92984 1.51856 1.81692 1.91918 0.93908 0.89175 0.93579 0.90182 0.90637 0.92388 0.86094 0.89475 0.84330 0.75064 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.40 71.98 0.60 -2.69 16 2 C -0.11 -2.24 1.43 -51.80 -0.07 -2.31 16 3 C -0.14 -2.09 9.30 71.98 0.67 -1.42 16 4 C 0.03 0.53 7.74 83.61 0.65 1.18 16 5 N -0.65 -17.72 8.58 -522.35 -4.48 -22.20 16 6 C 0.03 0.72 4.02 41.44 0.17 0.88 16 7 H 0.14 3.41 8.10 -2.39 -0.02 3.39 16 8 C 0.51 19.49 5.32 87.66 0.47 19.96 16 9 O -0.58 -27.36 14.59 -3.06 -0.04 -27.41 16 10 N -0.70 -27.74 4.98 -446.09 -2.22 -29.96 16 11 C 0.25 12.63 2.21 44.24 0.10 12.72 16 12 H 0.04 2.58 7.58 -2.38 -0.02 2.56 16 13 C -0.56 -27.80 8.47 25.60 0.22 -27.59 16 14 H 0.09 4.24 7.74 -2.91 -0.02 4.22 16 15 C 0.01 0.73 5.20 84.65 0.44 1.17 16 16 N -0.88 -48.55 9.49 21.45 0.20 -48.35 16 17 Si 0.98 40.01 29.54 68.60 2.03 42.03 16 18 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 19 H -0.29 -11.73 7.11 99.48 0.71 -11.03 16 20 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 21 C 0.41 21.56 2.80 71.98 0.20 21.77 16 22 F -0.15 -8.60 12.90 44.97 0.58 -8.02 16 23 F -0.22 -11.69 15.68 44.97 0.71 -10.98 16 24 F -0.20 -9.99 16.94 44.97 0.76 -9.22 16 25 H 0.04 1.29 7.44 -2.39 -0.02 1.27 16 26 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 27 H 0.05 1.21 7.21 -2.38 -0.02 1.20 16 28 H 0.08 0.96 7.90 -2.39 -0.02 0.94 16 29 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 30 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.12 1.73 7.93 -2.39 -0.02 1.71 16 32 H 0.09 1.38 8.12 -2.39 -0.02 1.36 16 33 H 0.34 10.47 6.92 -89.70 -0.62 9.85 16 34 H 0.41 13.71 8.54 -92.70 -0.79 12.91 16 35 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -64.83 299.12 0.69 -64.13 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: -0.27 Total: 26.31 kcal Atomic # 6 Polarization: 20.23 SS G_CDS: 3.44 Total: 23.67 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -6.50 Total: -100.51 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.04 Total: -27.41 kcal Atomic # 9 Polarization: -30.27 SS G_CDS: 2.05 Total: -28.22 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.03 kcal Total: -64.83 0.69 -64.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573612900.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.775 kcal (2) G-P(sol) polarization free energy of solvation -64.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds