Wall clock time and date at job start Tue Mar 31 2020 02:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 113.38581 * 2 1 4 4 C 1.53513 * 114.16977 * 226.91700 * 2 1 3 5 5 N 1.47472 * 87.93382 * 272.37675 * 4 2 1 6 6 C 1.47481 * 87.83882 * 332.98831 * 5 4 2 7 7 H 1.09004 * 113.47705 * 141.83033 * 6 5 4 8 8 C 1.50692 * 113.47850 * 272.24262 * 6 5 4 9 9 O 1.21279 * 120.00075 * 0.49446 * 8 6 5 10 10 N 1.34781 * 120.00123 * 180.49490 * 8 6 5 11 11 C 1.46497 * 120.00014 * 180.02562 * 10 8 6 12 12 H 1.09000 * 109.47569 * 324.99897 * 11 10 8 13 13 C 1.50697 * 109.47327 * 204.99782 * 11 10 8 14 14 H 1.08006 * 119.99789 * 275.10633 * 13 11 10 15 15 C 1.37872 * 120.00073 * 94.82532 * 13 11 10 16 16 N 1.31521 * 120.00042 * 174.34226 * 15 13 11 17 17 Si 1.86799 * 120.00055 * 354.33693 * 15 13 11 18 18 H 1.48504 * 109.46908 * 93.98011 * 17 15 13 19 19 H 1.48499 * 109.47423 * 213.97952 * 17 15 13 20 20 H 1.48496 * 109.47034 * 333.98375 * 17 15 13 21 21 C 1.53002 * 109.47146 * 84.99743 * 11 10 8 22 22 F 1.39903 * 109.47138 * 174.60578 * 21 11 10 23 23 F 1.39904 * 109.47192 * 294.59981 * 21 11 10 24 24 F 1.39898 * 109.47291 * 54.60383 * 21 11 10 25 25 H 1.09001 * 109.46978 * 286.92813 * 1 2 3 26 26 H 1.09006 * 109.47232 * 46.91968 * 1 2 3 27 27 H 1.08995 * 109.47621 * 166.92122 * 1 2 3 28 28 H 1.09003 * 109.47188 * 193.08098 * 3 2 1 29 29 H 1.09004 * 109.47036 * 313.07649 * 3 2 1 30 30 H 1.08998 * 109.47030 * 73.07426 * 3 2 1 31 31 H 1.09008 * 113.47570 * 157.60995 * 4 2 1 32 32 H 1.08992 * 113.53151 * 27.15847 * 4 2 1 33 33 H 1.00901 * 111.00411 * 221.29688 * 5 4 2 34 34 H 0.96998 * 119.99988 * 359.97438 * 10 8 6 35 35 H 0.97001 * 119.99869 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1373 1.4044 0.0000 4 6 2.1585 -0.9567 -1.0229 5 7 2.0810 -2.0161 0.0000 6 6 2.1586 -0.9566 1.0230 7 1 1.5254 -1.1433 1.8904 8 6 3.5703 -0.5887 1.4004 9 8 4.5057 -1.1456 0.8658 10 7 3.7936 0.3592 2.3322 11 6 5.1660 0.7173 2.6987 12 1 5.7960 -0.1714 2.6602 13 6 5.1816 1.2838 4.0950 14 1 4.9739 2.3316 4.2550 15 6 5.4552 0.4635 5.1688 16 7 5.5788 0.9765 6.3735 17 14 5.6502 -1.3765 4.9127 18 1 7.0873 -1.7006 4.7248 19 1 5.1311 -2.0996 6.1013 20 1 4.8875 -1.7922 3.7082 21 6 5.6994 1.7634 1.7178 22 9 6.9620 2.1956 2.1380 23 9 5.8010 1.1977 0.4423 24 9 4.8233 2.8533 1.6763 25 1 -0.3633 0.2992 0.9832 26 1 -0.3634 0.7019 -0.7506 27 1 -0.3634 -1.0009 -0.2325 28 1 3.2003 1.3405 -0.2326 29 1 1.6372 2.0164 -0.7507 30 1 2.0069 1.8566 0.9831 31 1 3.1797 -0.6906 -1.2960 32 1 1.5255 -1.1434 -1.8903 33 1 2.9172 -2.5807 0.0001 34 1 3.0455 0.8049 2.7595 35 1 5.7717 0.3993 7.1290 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573612901.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:24 Heat of formation + Delta-G solvation = -191.322374 kcal Electronic energy + Delta-G solvation = -24102.806496 eV Core-core repulsion = 20106.464569 eV Total energy + Delta-G solvation = -3996.341927 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.90236 -48.41332 -48.38477 -42.28138 -39.33941 -36.64509 -34.57798 -32.84363 -31.34829 -28.31212 -27.60482 -26.90773 -25.17859 -23.36507 -21.96457 -20.49667 -19.38836 -19.33583 -18.62321 -18.48065 -17.89302 -17.28838 -16.75860 -16.45045 -15.69252 -15.54561 -15.29908 -15.22038 -14.87585 -14.85289 -14.75431 -14.60294 -14.53712 -14.33890 -14.05108 -13.69581 -13.28462 -13.15236 -13.02337 -12.83329 -12.62503 -12.16509 -12.02407 -11.86128 -11.75894 -11.31579 -11.18262 -11.01084 -10.18552 -10.10500 -8.57785 -6.75756 1.21967 1.30196 1.38418 1.44017 1.93569 2.11838 2.14161 2.87263 3.09090 3.18466 3.30126 3.32784 3.46678 3.77018 3.94246 4.18302 4.25956 4.37133 4.40041 4.65434 4.70882 4.76619 4.89436 4.91942 5.04549 5.09922 5.12135 5.26858 5.39270 5.49192 5.84408 6.02380 6.41244 6.60922 6.97067 7.17076 8.54642 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.018465 B = 0.008094 C = 0.006849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.024279 B = 3458.581143 C = 4087.444794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.061 4.061 3 C -0.143 4.143 4 C 0.005 3.995 5 N -0.600 5.600 6 C 0.007 3.993 7 H 0.130 0.870 8 C 0.498 3.502 9 O -0.577 6.577 10 N -0.699 5.699 11 C 0.212 3.788 12 H 0.075 0.925 13 C -0.537 4.537 14 H 0.067 0.933 15 C 0.063 3.937 16 N -0.897 5.897 17 Si 0.923 3.077 18 H -0.272 1.272 19 H -0.269 1.269 20 H -0.256 1.256 21 C 0.441 3.559 22 F -0.187 7.187 23 F -0.193 7.193 24 F -0.184 7.184 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.030 0.970 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.325 0.675 34 H 0.413 0.587 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.579 -1.640 -10.626 14.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.062 4.062 3 C -0.200 4.200 4 C -0.125 4.125 5 N -0.225 5.225 6 C -0.108 4.108 7 H 0.147 0.853 8 C 0.285 3.715 9 O -0.457 6.457 10 N -0.351 5.351 11 C 0.107 3.893 12 H 0.093 0.907 13 C -0.575 4.575 14 H 0.085 0.915 15 C -0.144 4.144 16 N -0.531 5.531 17 Si 0.747 3.253 18 H -0.197 1.197 19 H -0.194 1.194 20 H -0.180 1.180 21 C 0.385 3.615 22 F -0.169 7.169 23 F -0.175 7.175 24 F -0.165 7.165 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.050 0.950 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.139 0.861 34 H 0.251 0.749 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.692 -2.398 -10.815 14.719 hybrid contribution 1.469 0.015 0.379 1.517 sum -8.223 -2.383 -10.436 13.498 Atomic orbital electron populations 1.21479 0.89127 1.03105 1.03322 1.22040 0.98129 0.93126 0.92894 1.21845 0.99332 0.95476 1.03396 1.23798 1.00074 0.91533 0.97106 1.67502 1.40749 1.11134 1.03140 1.23412 0.91977 0.95629 0.99793 0.85285 1.21553 0.92311 0.79155 0.78527 1.90647 1.45936 1.54434 1.54724 1.47029 1.09052 1.39001 1.40010 1.19722 0.84622 0.92889 0.92084 0.90716 1.20653 1.51595 0.97478 0.87767 0.91450 1.25548 0.91957 1.02409 0.94491 1.69934 1.44670 1.38098 1.00413 0.86078 0.79564 0.80637 0.79047 1.19700 1.19436 1.17970 1.21541 0.75767 0.83448 0.80713 1.93103 1.42787 1.90828 1.90160 1.93144 1.96084 1.84846 1.43399 1.93080 1.69229 1.57636 1.96582 0.91063 0.90365 0.91439 0.95037 0.89757 0.91496 0.93113 0.87706 0.86057 0.74917 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 9.22 71.98 0.66 -1.21 16 2 C -0.06 -1.37 1.49 -51.84 -0.08 -1.45 16 3 C -0.14 -3.43 8.17 71.98 0.59 -2.85 16 4 C 0.01 0.13 7.29 83.58 0.61 0.74 16 5 N -0.60 -16.27 8.45 -522.91 -4.42 -20.69 16 6 C 0.01 0.18 4.36 41.44 0.18 0.37 16 7 H 0.13 3.20 8.12 -2.39 -0.02 3.18 16 8 C 0.50 18.01 5.20 87.65 0.46 18.46 16 9 O -0.58 -24.59 13.94 -3.03 -0.04 -24.63 16 10 N -0.70 -26.27 4.39 -446.11 -1.96 -28.22 16 11 C 0.21 9.44 1.48 44.25 0.07 9.51 16 12 H 0.08 3.58 5.10 -2.39 -0.01 3.56 16 13 C -0.54 -26.98 8.52 25.60 0.22 -26.76 16 14 H 0.07 3.70 8.01 -2.91 -0.02 3.68 16 15 C 0.06 3.22 5.47 84.65 0.46 3.69 16 16 N -0.90 -49.07 13.96 21.45 0.30 -48.77 16 17 Si 0.92 40.90 27.03 68.60 1.85 42.75 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.26 -11.31 6.84 99.48 0.68 -10.63 16 21 C 0.44 19.04 2.83 71.98 0.20 19.24 16 22 F -0.19 -8.46 16.88 44.97 0.76 -7.70 16 23 F -0.19 -8.20 15.85 44.97 0.71 -7.48 16 24 F -0.18 -7.46 16.94 44.97 0.76 -6.70 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 26 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.07 1.15 7.92 -2.39 -0.02 1.13 16 28 H 0.03 0.94 7.21 -2.39 -0.02 0.92 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.07 1.60 7.71 -2.39 -0.02 1.58 16 31 H 0.05 1.49 7.44 -2.38 -0.02 1.47 16 32 H 0.10 2.12 8.12 -2.39 -0.02 2.10 16 33 H 0.32 9.86 7.72 -89.69 -0.69 9.17 16 34 H 0.41 13.80 8.28 -92.71 -0.77 13.03 16 35 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -58.49 300.86 1.00 -57.49 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -0.34 Total: 24.22 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: 3.37 Total: 19.74 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -6.08 Total: -97.68 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.04 Total: -24.63 kcal Atomic # 9 Polarization: -24.12 SS G_CDS: 2.23 Total: -21.89 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 1.85 Total: 42.75 kcal Total: -58.49 1.00 -57.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573612901.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.832 kcal (2) G-P(sol) polarization free energy of solvation -58.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds