Wall clock time and date at job start Tue Mar 31 2020 01:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99605 * 2 1 4 4 H 1.48503 * 109.47269 * 264.79695 * 3 2 1 5 5 H 1.48497 * 109.47322 * 24.79859 * 3 2 1 6 6 H 1.48505 * 109.47122 * 144.79980 * 3 2 1 7 7 C 1.37878 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99824 * 5.79520 * 7 2 1 9 9 C 1.50698 * 119.99591 * 185.78476 * 7 2 1 10 10 H 1.08993 * 109.47046 * 35.48583 * 9 7 2 11 11 N 1.46502 * 109.47426 * 275.48116 * 9 7 2 12 12 C 1.34773 * 119.99841 * 155.27950 * 11 9 7 13 13 O 1.21280 * 120.00332 * 359.72603 * 12 11 9 14 14 C 1.50701 * 119.99886 * 179.72643 * 12 11 9 15 15 H 1.08998 * 110.01666 * 30.56778 * 14 12 11 16 16 C 1.54266 * 110.03574 * 151.96102 * 14 12 11 17 17 C 1.54887 * 104.19731 * 142.89069 * 16 14 12 18 18 C 1.54891 * 102.75131 * 322.06029 * 17 16 14 19 19 C 1.53880 * 110.03054 * 269.18125 * 14 12 11 20 20 H 1.08999 * 110.02946 * 121.43037 * 19 14 12 21 21 N 1.46900 * 110.03382 * 359.97438 * 19 14 12 22 22 C 1.53001 * 109.46663 * 155.48094 * 9 7 2 23 23 F 1.39899 * 109.47092 * 181.84272 * 22 9 7 24 24 F 1.39898 * 109.47445 * 301.84310 * 22 9 7 25 25 F 1.39903 * 109.47286 * 61.84436 * 22 9 7 26 26 H 0.96999 * 120.00171 * 359.97438 * 1 2 3 27 27 H 0.97005 * 119.99986 * 334.99805 * 11 9 7 28 28 H 1.08993 * 110.48409 * 261.57454 * 16 14 12 29 29 H 1.09004 * 110.48088 * 24.08215 * 16 14 12 30 30 H 1.09004 * 110.75523 * 80.37493 * 17 16 14 31 31 H 1.08995 * 110.75573 * 203.74372 * 17 16 14 32 32 H 1.08996 * 110.48378 * 156.61663 * 18 17 16 33 33 H 1.09000 * 110.48454 * 279.13295 * 18 17 16 34 34 H 1.00898 * 111.00241 * 172.58754 * 21 19 14 35 35 H 1.00902 * 110.99898 * 296.54177 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6065 1.9830 -1.3943 5 1 1.3959 2.6819 0.5872 6 1 3.4874 1.4745 0.8071 7 6 2.0046 -1.1940 -0.0005 8 1 1.4688 -2.1269 -0.0954 9 6 3.5058 -1.1973 0.1310 10 1 3.8138 -0.3928 0.7987 11 7 4.1121 -0.9967 -1.1875 12 6 5.3509 -0.4753 -1.2873 13 8 5.9618 -0.1676 -0.2858 14 6 5.9769 -0.2747 -2.6433 15 1 5.2041 -0.0722 -3.3848 16 6 6.9813 0.8952 -2.5939 17 6 8.1360 0.4441 -3.5224 18 6 8.2421 -1.0721 -3.2241 19 6 6.7775 -1.5261 -3.0446 20 1 6.3937 -1.9303 -3.9813 21 7 6.6913 -2.5398 -1.9850 22 6 3.9645 -2.5396 0.7044 23 9 5.3541 -2.5273 0.8659 24 9 3.3528 -2.7504 1.9447 25 9 3.6062 -3.5685 -0.1732 26 1 -0.4850 0.8400 0.0004 27 1 3.6235 -1.2429 -1.9885 28 1 6.5220 1.8084 -2.9722 29 1 7.3432 1.0445 -1.5766 30 1 7.8800 0.6150 -4.5681 31 1 9.0630 0.9548 -3.2621 32 1 8.7029 -1.5945 -4.0624 33 1 8.8114 -1.2421 -2.3103 34 1 7.1081 -3.4094 -2.2817 35 1 7.1156 -2.2080 -1.1318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580047567.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:40 Heat of formation + Delta-G solvation = -209.211001 kcal Electronic energy + Delta-G solvation = -23979.659320 eV Core-core repulsion = 19982.541684 eV Total energy + Delta-G solvation = -3997.117636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.88749 -46.39918 -46.37727 -39.80851 -37.21604 -34.61482 -32.55635 -32.37189 -29.94552 -28.16780 -26.27664 -24.85828 -22.09702 -20.77865 -20.55646 -19.09999 -17.90074 -17.42288 -16.95047 -16.65021 -16.43767 -16.08326 -15.23051 -14.65792 -14.49332 -13.79164 -13.60357 -13.29073 -13.24898 -13.11387 -12.94023 -12.83127 -12.65865 -12.57418 -12.52405 -12.40706 -11.77774 -11.46190 -11.17341 -11.07271 -11.05227 -10.78796 -10.62514 -10.52072 -10.07443 -9.71277 -9.26175 -8.86781 -8.51286 -8.20746 -6.46146 -4.59389 3.13056 3.20265 3.30323 3.32880 3.85355 4.09412 4.14784 4.45693 4.63801 4.71240 4.96544 5.04527 5.21835 5.35561 5.37788 5.42326 5.49181 5.52283 5.60241 5.65335 5.73379 5.81006 5.98922 6.10586 6.18529 6.42034 6.51888 7.01150 7.26929 7.34568 7.60976 7.93872 8.49013 8.59334 9.02542 9.09587 10.62605 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.018182 B = 0.008323 C = 0.006457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.594743 B = 3363.170753 C = 4335.090065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.098 3.902 3 Si 0.872 3.128 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.535 4.535 8 H 0.092 0.908 9 C 0.199 3.801 10 H 0.092 0.908 11 N -0.703 5.703 12 C 0.529 3.471 13 O -0.556 6.556 14 C -0.116 4.116 15 H 0.090 0.910 16 C -0.117 4.117 17 C -0.119 4.119 18 C -0.158 4.158 19 C 0.105 3.895 20 H 0.087 0.913 21 N -0.839 5.839 22 C 0.445 3.555 23 F -0.192 7.192 24 F -0.189 7.189 25 F -0.189 7.189 26 H 0.274 0.726 27 H 0.399 0.601 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.338 0.662 35 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.670 -0.746 -7.385 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.112 4.112 3 Si 0.698 3.302 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.573 4.573 8 H 0.110 0.890 9 C 0.095 3.905 10 H 0.110 0.890 11 N -0.353 5.353 12 C 0.315 3.685 13 O -0.435 6.435 14 C -0.138 4.138 15 H 0.108 0.892 16 C -0.155 4.155 17 C -0.157 4.157 18 C -0.197 4.197 19 C -0.008 4.008 20 H 0.105 0.895 21 N -0.369 5.369 22 C 0.389 3.611 23 F -0.174 7.174 24 F -0.170 7.170 25 F -0.171 7.171 26 H 0.084 0.916 27 H 0.234 0.766 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.151 0.849 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.099 -0.388 -6.704 13.838 hybrid contribution 1.168 0.479 -0.456 1.342 sum 13.267 0.091 -7.160 15.076 Atomic orbital electron populations 1.69876 1.06358 1.28151 1.45406 1.24954 0.94742 0.99200 0.92261 0.86904 0.80699 0.82882 0.79717 1.19459 1.20876 1.17890 1.20781 0.86367 0.96330 1.53785 0.88992 1.20188 0.95777 0.89514 0.84992 0.89030 1.47304 1.15617 1.62212 1.10169 1.20230 0.81656 0.76359 0.90293 1.90617 1.62209 1.52345 1.38301 1.22097 0.98621 0.96322 0.96733 0.89151 1.22390 0.95026 0.96439 1.01639 1.22400 0.98533 0.95383 0.99406 1.23271 0.98050 0.96871 1.01532 1.21957 0.92715 0.91085 0.95020 0.89502 1.58827 1.65842 1.05923 1.06349 1.21453 0.74005 0.89794 0.75822 1.93114 1.31690 1.97007 1.95572 1.93092 1.83338 1.95800 1.44810 1.93074 1.91679 1.62934 1.69394 0.91630 0.76551 0.91562 0.89485 0.91512 0.91630 0.91743 0.91491 0.84928 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.20 13.96 55.43 0.77 -23.42 16 2 C 0.10 2.59 5.47 -17.82 -0.10 2.49 16 3 Si 0.87 20.52 27.23 -169.99 -4.63 15.89 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.25 -6.15 6.15 56.52 0.35 -5.80 16 7 C -0.53 -13.97 8.58 -34.44 -0.30 -14.26 16 8 H 0.09 2.61 7.89 -52.49 -0.41 2.20 16 9 C 0.20 4.67 1.42 -69.08 -0.10 4.57 16 10 H 0.09 2.32 5.23 -51.93 -0.27 2.05 16 11 N -0.70 -14.35 4.44 -54.93 -0.24 -14.59 16 12 C 0.53 10.11 4.81 -10.99 -0.05 10.06 16 13 O -0.56 -12.20 13.75 5.56 0.08 -12.13 16 14 C -0.12 -1.69 3.29 -90.65 -0.30 -1.98 16 15 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 16 C -0.12 -1.56 6.31 -25.07 -0.16 -1.72 16 17 C -0.12 -1.24 6.91 -24.74 -0.17 -1.41 16 18 C -0.16 -1.66 6.51 -25.01 -0.16 -1.82 16 19 C 0.10 1.29 4.03 -66.53 -0.27 1.02 16 20 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 21 N -0.84 -11.61 8.10 -3.66 -0.03 -11.64 16 22 C 0.44 10.11 2.82 37.16 0.10 10.21 16 23 F -0.19 -4.21 15.71 2.25 0.04 -4.17 16 24 F -0.19 -4.42 16.98 2.25 0.04 -4.38 16 25 F -0.19 -4.21 16.84 2.25 0.04 -4.17 16 26 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.40 7.61 8.59 -40.82 -0.35 7.26 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.09 1.36 6.84 -51.93 -0.36 1.00 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.76 7.89 -51.93 -0.41 0.35 16 34 H 0.34 3.88 9.08 -39.29 -0.36 3.53 16 35 H 0.35 5.52 7.72 -39.29 -0.30 5.21 16 LS Contribution 297.92 15.07 4.49 4.49 Total: -1.00 -28.89 297.92 -5.14 -34.02 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -4.19 Total: 12.94 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -1.50 Total: 7.16 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.50 Total: -49.65 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.08 Total: -12.13 kcal Atomic # 9 Polarization: -12.83 SS G_CDS: 0.11 Total: -12.72 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.63 Total: 15.89 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.89 -5.14 -34.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047567.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.188 kcal (2) G-P(sol) polarization free energy of solvation -28.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds