Wall clock time and date at job start Tue Mar 31 2020 01:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99605 * 2 1 4 4 H 1.48503 * 109.47269 * 264.79695 * 3 2 1 5 5 H 1.48497 * 109.47322 * 24.79859 * 3 2 1 6 6 H 1.48505 * 109.47122 * 144.79980 * 3 2 1 7 7 C 1.37878 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99824 * 5.79520 * 7 2 1 9 9 C 1.50698 * 119.99591 * 185.78476 * 7 2 1 10 10 H 1.08993 * 109.47046 * 35.48583 * 9 7 2 11 11 N 1.46502 * 109.47426 * 275.48116 * 9 7 2 12 12 C 1.34773 * 119.99841 * 155.27950 * 11 9 7 13 13 O 1.21280 * 120.00332 * 359.72603 * 12 11 9 14 14 C 1.50701 * 119.99886 * 179.72643 * 12 11 9 15 15 H 1.08998 * 110.01666 * 30.56778 * 14 12 11 16 16 C 1.54266 * 110.03574 * 151.96102 * 14 12 11 17 17 C 1.54887 * 104.19731 * 142.89069 * 16 14 12 18 18 C 1.54891 * 102.75131 * 322.06029 * 17 16 14 19 19 C 1.53880 * 110.03054 * 269.18125 * 14 12 11 20 20 H 1.08999 * 110.02946 * 121.43037 * 19 14 12 21 21 N 1.46900 * 110.03382 * 359.97438 * 19 14 12 22 22 C 1.53001 * 109.46663 * 155.48094 * 9 7 2 23 23 F 1.39899 * 109.47092 * 181.84272 * 22 9 7 24 24 F 1.39898 * 109.47445 * 301.84310 * 22 9 7 25 25 F 1.39903 * 109.47286 * 61.84436 * 22 9 7 26 26 H 0.96999 * 120.00171 * 359.97438 * 1 2 3 27 27 H 0.97005 * 119.99986 * 334.99805 * 11 9 7 28 28 H 1.08993 * 110.48409 * 261.57454 * 16 14 12 29 29 H 1.09004 * 110.48088 * 24.08215 * 16 14 12 30 30 H 1.09004 * 110.75523 * 80.37493 * 17 16 14 31 31 H 1.08995 * 110.75573 * 203.74372 * 17 16 14 32 32 H 1.08996 * 110.48378 * 156.61663 * 18 17 16 33 33 H 1.09000 * 110.48454 * 279.13295 * 18 17 16 34 34 H 1.00898 * 111.00241 * 172.58754 * 21 19 14 35 35 H 1.00902 * 110.99898 * 296.54177 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6065 1.9830 -1.3943 5 1 1.3959 2.6819 0.5872 6 1 3.4874 1.4745 0.8071 7 6 2.0046 -1.1940 -0.0005 8 1 1.4688 -2.1269 -0.0954 9 6 3.5058 -1.1973 0.1310 10 1 3.8138 -0.3928 0.7987 11 7 4.1121 -0.9967 -1.1875 12 6 5.3509 -0.4753 -1.2873 13 8 5.9618 -0.1676 -0.2858 14 6 5.9769 -0.2747 -2.6433 15 1 5.2041 -0.0722 -3.3848 16 6 6.9813 0.8952 -2.5939 17 6 8.1360 0.4441 -3.5224 18 6 8.2421 -1.0721 -3.2241 19 6 6.7775 -1.5261 -3.0446 20 1 6.3937 -1.9303 -3.9813 21 7 6.6913 -2.5398 -1.9850 22 6 3.9645 -2.5396 0.7044 23 9 5.3541 -2.5273 0.8659 24 9 3.3528 -2.7504 1.9447 25 9 3.6062 -3.5685 -0.1732 26 1 -0.4850 0.8400 0.0004 27 1 3.6235 -1.2429 -1.9885 28 1 6.5220 1.8084 -2.9722 29 1 7.3432 1.0445 -1.5766 30 1 7.8800 0.6150 -4.5681 31 1 9.0630 0.9548 -3.2621 32 1 8.7029 -1.5945 -4.0624 33 1 8.8114 -1.2421 -2.3103 34 1 7.1081 -3.4094 -2.2817 35 1 7.1156 -2.2080 -1.1318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580047567.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:39 Heat of formation + Delta-G solvation = -230.107554 kcal Electronic energy + Delta-G solvation = -23980.565462 eV Core-core repulsion = 19982.541684 eV Total energy + Delta-G solvation = -3998.023778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.74769 -48.27439 -48.21481 -41.15955 -38.48895 -36.41795 -34.41060 -33.47553 -31.48259 -29.52430 -27.27973 -26.83865 -23.68246 -22.19179 -21.64596 -20.64339 -19.62194 -19.23925 -18.55717 -18.31732 -18.09096 -17.49018 -16.83276 -16.18222 -15.50902 -15.38598 -15.14717 -15.01254 -14.91739 -14.72402 -14.69150 -14.43884 -14.39787 -14.28838 -14.20883 -13.73165 -13.40847 -12.94876 -12.53836 -12.44042 -12.15131 -11.98808 -11.94803 -11.82047 -11.73792 -11.53271 -11.09410 -10.61962 -9.94869 -9.51145 -8.52310 -6.69347 1.25356 1.31006 1.41005 1.76378 2.15431 2.22026 2.29991 3.00116 3.34271 3.44281 3.49850 3.63977 3.69907 3.81245 4.05281 4.29173 4.46605 4.49192 4.51057 4.60258 4.67169 4.77190 4.99139 5.02143 5.15430 5.17005 5.27306 5.44697 5.63040 5.90615 6.24298 6.45378 6.60512 6.87607 7.02261 7.47046 8.60568 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.018182 B = 0.008323 C = 0.006457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.594743 B = 3363.170753 C = 4335.090065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.060 3.940 3 Si 0.925 3.075 4 H -0.252 1.252 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.209 3.791 10 H 0.075 0.925 11 N -0.703 5.703 12 C 0.527 3.473 13 O -0.585 6.585 14 C -0.116 4.116 15 H 0.108 0.892 16 C -0.119 4.119 17 C -0.110 4.110 18 C -0.151 4.151 19 C 0.106 3.894 20 H 0.108 0.892 21 N -0.853 5.853 22 C 0.447 3.553 23 F -0.185 7.185 24 F -0.195 7.195 25 F -0.186 7.186 26 H 0.279 0.721 27 H 0.407 0.593 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.350 0.650 35 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.346 -0.161 -9.383 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.749 3.251 4 H -0.176 1.176 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.575 4.575 8 H 0.079 0.921 9 C 0.104 3.896 10 H 0.093 0.907 11 N -0.353 5.353 12 C 0.316 3.684 13 O -0.466 6.466 14 C -0.137 4.137 15 H 0.126 0.874 16 C -0.157 4.157 17 C -0.148 4.148 18 C -0.190 4.190 19 C -0.006 4.006 20 H 0.126 0.874 21 N -0.384 5.384 22 C 0.391 3.609 23 F -0.167 7.167 24 F -0.176 7.176 25 F -0.167 7.167 26 H 0.088 0.912 27 H 0.244 0.756 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.165 0.835 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 13.786 0.185 -8.744 16.326 hybrid contribution 0.675 0.222 0.196 0.737 sum 14.461 0.407 -8.548 16.803 Atomic orbital electron populations 1.69954 1.07666 1.29212 1.47081 1.25524 0.95216 1.01846 0.91937 0.86078 0.78943 0.79683 0.80380 1.17560 1.20241 1.19192 1.20718 0.87694 0.95194 1.53930 0.92089 1.19799 0.94347 0.89334 0.86149 0.90718 1.46948 1.16464 1.62904 1.09011 1.20978 0.80637 0.74867 0.91954 1.90607 1.62673 1.53262 1.40012 1.22246 0.99413 0.98277 0.93804 0.87351 1.22403 0.95917 0.96435 1.00985 1.22391 0.97603 0.95027 0.99776 1.23201 0.96606 0.97215 1.01973 1.22076 0.93660 0.89784 0.95114 0.87387 1.58828 1.66164 1.07052 1.06388 1.21350 0.74267 0.89676 0.75619 1.93128 1.31037 1.96977 1.95525 1.93079 1.83518 1.95829 1.45219 1.93077 1.91699 1.62700 1.69241 0.91155 0.75606 0.90713 0.92246 0.89354 0.90749 0.89314 0.92672 0.83540 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.11 13.96 21.45 0.30 -50.81 16 2 C 0.06 3.22 5.47 84.65 0.46 3.69 16 3 Si 0.93 42.11 27.23 68.60 1.87 43.97 16 4 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.27 -12.63 6.15 99.48 0.61 -12.02 16 7 C -0.54 -28.45 8.58 25.60 0.22 -28.23 16 8 H 0.06 3.57 7.89 -2.91 -0.02 3.54 16 9 C 0.21 9.82 1.42 44.24 0.06 9.88 16 10 H 0.08 3.80 5.23 -2.39 -0.01 3.79 16 11 N -0.70 -28.03 4.44 -446.11 -1.98 -30.02 16 12 C 0.53 19.50 4.81 87.66 0.42 19.93 16 13 O -0.58 -25.42 13.75 -3.03 -0.04 -25.46 16 14 C -0.12 -3.07 3.29 -10.81 -0.04 -3.11 16 15 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 16 C -0.12 -2.89 6.31 31.67 0.20 -2.69 16 17 C -0.11 -1.89 6.91 31.88 0.22 -1.66 16 18 C -0.15 -2.65 6.51 31.71 0.21 -2.44 16 19 C 0.11 2.28 4.03 45.68 0.18 2.47 16 20 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 21 N -0.85 -22.06 8.10 -165.51 -1.34 -23.40 16 22 C 0.45 20.30 2.82 71.98 0.20 20.50 16 23 F -0.19 -8.04 15.71 44.97 0.71 -7.34 16 24 F -0.19 -9.19 16.98 44.97 0.76 -8.43 16 25 F -0.19 -8.21 16.84 44.97 0.76 -7.45 16 26 H 0.28 14.63 8.31 -92.71 -0.77 13.85 16 27 H 0.41 15.02 8.59 -92.70 -0.80 14.23 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.06 1.79 6.84 -2.39 -0.02 1.77 16 30 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.12 7.89 -2.39 -0.02 1.10 16 34 H 0.35 7.34 9.08 -89.70 -0.81 6.52 16 35 H 0.34 10.29 7.72 -89.69 -0.69 9.60 16 Total: -1.00 -62.20 297.92 1.94 -60.25 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: -1.24 Total: 30.36 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: 2.14 Total: 18.32 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -3.02 Total: -104.23 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.04 Total: -25.46 kcal Atomic # 9 Polarization: -25.45 SS G_CDS: 2.23 Total: -23.22 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.87 Total: 43.97 kcal Total: -62.20 1.94 -60.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047567.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.853 kcal (2) G-P(sol) polarization free energy of solvation -62.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds