Wall clock time and date at job start Tue Mar 31 2020 01:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00010 * 2 1 4 4 H 1.48498 * 109.47352 * 269.99693 * 3 2 1 5 5 H 1.48498 * 109.47572 * 30.00127 * 3 2 1 6 6 H 1.48509 * 109.46903 * 149.99718 * 3 2 1 7 7 C 1.37874 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99652 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00363 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46868 * 59.99899 * 9 7 2 11 11 N 1.46497 * 109.47149 * 179.97438 * 9 7 2 12 12 C 1.34778 * 120.00031 * 205.00012 * 11 9 7 13 13 O 1.21281 * 119.99820 * 359.97438 * 12 11 9 14 14 C 1.50702 * 120.00303 * 180.02562 * 12 11 9 15 15 H 1.09006 * 110.43233 * 298.91206 * 14 12 11 16 16 C 1.54887 * 110.48595 * 61.44940 * 14 12 11 17 17 C 1.54890 * 102.91108 * 156.66283 * 16 14 12 18 18 C 1.54463 * 104.10368 * 322.30112 * 17 16 14 19 19 C 1.53877 * 106.68421 * 23.34437 * 18 17 16 20 20 H 1.08993 * 110.03177 * 119.44086 * 19 18 17 21 21 N 1.46898 * 110.02930 * 240.87359 * 19 18 17 22 22 C 1.52995 * 109.47142 * 300.00010 * 9 7 2 23 23 F 1.39906 * 109.47334 * 299.99957 * 22 9 7 24 24 F 1.39899 * 109.47412 * 59.99817 * 22 9 7 25 25 F 1.39905 * 109.47439 * 179.97438 * 22 9 7 26 26 H 0.97006 * 119.99299 * 0.02562 * 1 2 3 27 27 H 0.97002 * 120.00076 * 25.00087 * 11 9 7 28 28 H 1.09002 * 110.75856 * 275.07193 * 16 14 12 29 29 H 1.09006 * 110.75640 * 38.26179 * 16 14 12 30 30 H 1.09003 * 110.48855 * 80.83451 * 17 16 14 31 31 H 1.09003 * 110.48748 * 203.47148 * 17 16 14 32 32 H 1.08999 * 109.85715 * 264.10233 * 18 17 16 33 33 H 1.09003 * 110.15968 * 142.74863 * 18 17 16 34 34 H 1.00899 * 111.00188 * 297.15969 * 21 19 18 35 35 H 1.00901 * 111.00310 * 61.12280 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6246 -2.5570 -0.8897 11 7 2.2029 -3.6126 0.0005 12 6 1.8368 -4.8123 -0.4928 13 8 0.7190 -4.9700 -0.9362 14 6 2.8158 -5.9580 -0.4923 15 1 3.6908 -5.7110 -1.0936 16 6 3.2358 -6.3115 0.9561 17 6 3.6967 -7.7851 0.8328 18 6 2.7068 -8.4059 -0.1774 19 6 2.1458 -7.2447 -1.0168 20 1 2.3916 -7.3915 -2.0685 21 7 0.6892 -7.1588 -0.8470 22 6 0.3709 -2.5799 1.2494 23 9 1.1748 -2.5056 2.3921 24 9 -0.5382 -1.5165 1.2489 25 9 -0.3291 -3.7912 1.2492 26 1 -0.4849 0.8402 -0.0004 27 1 3.0968 -3.4866 0.3556 28 1 4.0575 -5.6760 1.2861 29 1 2.3875 -6.2277 1.6356 30 1 4.7150 -7.8353 0.4470 31 1 3.6281 -8.2883 1.7973 32 1 1.8982 -8.9057 0.3561 33 1 3.2240 -9.1167 -0.8218 34 1 0.2358 -7.9940 -1.1858 35 1 0.4473 -6.9814 0.1164 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580047568.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:43 Heat of formation + Delta-G solvation = -166.728141 kcal Electronic energy + Delta-G solvation = -23823.317258 eV Core-core repulsion = 19828.041817 eV Total energy + Delta-G solvation = -3995.275441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.27387 -45.93037 -45.54028 -39.66937 -37.14283 -34.45336 -32.65618 -31.88372 -29.68241 -27.65666 -26.47777 -24.49820 -22.13032 -20.87826 -20.23505 -19.09335 -17.36236 -16.89164 -16.65690 -16.54304 -16.23749 -15.46508 -14.85681 -14.59103 -14.19034 -13.74663 -13.61135 -13.53767 -12.87228 -12.79745 -12.57768 -12.33909 -12.25772 -12.06627 -11.89494 -11.73793 -11.64965 -11.24892 -11.13755 -11.01466 -10.82364 -10.79260 -10.65714 -10.52690 -10.32835 -9.57879 -8.95523 -8.66014 -8.04142 -7.74347 -6.18450 -4.41693 3.20894 3.27280 3.30146 3.50033 3.97269 4.25762 4.50871 4.63384 4.65110 4.73455 4.98571 5.08626 5.37707 5.41944 5.46694 5.55941 5.63160 5.69768 5.82200 5.92248 5.95490 5.96725 6.06369 6.25668 6.28890 6.33166 7.06770 7.36988 7.53947 7.58540 7.69940 7.85229 8.52843 8.59542 9.17430 9.29125 10.73094 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.027716 B = 0.005831 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.016397 B = 4801.010617 C = 5078.948676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.064 3.936 3 Si 0.913 3.087 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.247 3.753 10 H 0.083 0.917 11 N -0.720 5.720 12 C 0.501 3.499 13 O -0.484 6.484 14 C -0.111 4.111 15 H 0.097 0.903 16 C -0.118 4.118 17 C -0.121 4.121 18 C -0.162 4.162 19 C 0.107 3.893 20 H 0.080 0.920 21 N -0.801 5.801 22 C 0.417 3.583 23 F -0.211 7.211 24 F -0.139 7.139 25 F -0.217 7.217 26 H 0.267 0.733 27 H 0.393 0.607 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.322 0.678 35 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.701 -11.893 1.275 13.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.145 4.145 3 Si 0.740 3.260 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.588 4.588 8 H 0.094 0.906 9 C 0.141 3.859 10 H 0.100 0.900 11 N -0.372 5.372 12 C 0.285 3.715 13 O -0.355 6.355 14 C -0.134 4.134 15 H 0.115 0.885 16 C -0.156 4.156 17 C -0.159 4.159 18 C -0.202 4.202 19 C -0.006 4.006 20 H 0.098 0.902 21 N -0.331 5.331 22 C 0.361 3.639 23 F -0.193 7.193 24 F -0.120 7.120 25 F -0.199 7.199 26 H 0.078 0.922 27 H 0.226 0.774 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.135 0.865 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.660 -11.247 0.454 12.599 hybrid contribution 0.901 0.069 1.175 1.482 sum 6.561 -11.178 1.629 13.064 Atomic orbital electron populations 1.70416 1.05828 1.27196 1.43930 1.25087 0.95132 1.00068 0.94171 0.86245 0.79596 0.81846 0.78312 1.20242 1.20855 1.19586 1.20897 0.93713 0.88332 1.55821 0.90647 1.19604 0.88821 0.86038 0.91403 0.89953 1.46167 1.16805 1.10805 1.63399 1.20279 0.88868 0.83249 0.79121 1.90808 1.20051 1.81309 1.43369 1.22252 0.98613 0.94511 0.97974 0.88464 1.22508 1.01415 0.96236 0.95399 1.22334 0.98956 0.95605 0.98972 1.23214 0.99540 0.99020 0.98435 1.21834 0.88924 0.91212 0.98676 0.90165 1.59053 1.05580 1.41427 1.27032 1.23182 0.80860 0.72720 0.87152 1.92979 1.74516 1.96198 1.55645 1.93397 1.68484 1.53906 1.96209 1.93062 1.81459 1.48440 1.96975 0.92233 0.77433 0.90743 0.91025 0.91468 0.91741 0.91970 0.91770 0.86528 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.35 9.50 55.43 0.53 -22.83 16 2 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 3 Si 0.91 20.30 29.54 -169.99 -5.02 15.28 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 7 C -0.55 -14.19 8.46 -34.44 -0.29 -14.49 16 8 H 0.08 1.84 7.74 -52.49 -0.41 1.43 16 9 C 0.25 6.18 2.21 -69.09 -0.15 6.03 16 10 H 0.08 2.33 7.58 -51.93 -0.39 1.93 16 11 N -0.72 -14.64 4.93 -54.94 -0.27 -14.92 16 12 C 0.50 9.63 6.41 -10.98 -0.07 9.56 16 13 O -0.48 -11.02 12.08 5.56 0.07 -10.96 16 14 C -0.11 -1.56 3.18 -90.11 -0.29 -1.85 16 15 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 16 C -0.12 -1.42 6.25 -24.74 -0.15 -1.57 16 17 C -0.12 -1.18 6.85 -24.97 -0.17 -1.35 16 18 C -0.16 -1.64 6.58 -25.51 -0.17 -1.80 16 19 C 0.11 1.38 3.85 -66.60 -0.26 1.12 16 20 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 21 N -0.80 -11.99 6.22 -3.72 -0.02 -12.01 16 22 C 0.42 10.75 2.81 37.16 0.10 10.85 16 23 F -0.21 -5.24 16.94 2.25 0.04 -5.21 16 24 F -0.14 -3.89 12.91 2.25 0.03 -3.87 16 25 F -0.22 -5.49 15.68 2.25 0.04 -5.46 16 26 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.39 7.01 8.53 -40.82 -0.35 6.66 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.98 8.05 -51.93 -0.42 0.57 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.62 7.92 -51.93 -0.41 0.21 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.32 4.04 9.07 -39.29 -0.36 3.68 16 35 H 0.34 5.38 8.42 -39.29 -0.33 5.05 16 LS Contribution 295.37 15.07 4.45 4.45 Total: -1.00 -29.97 295.37 -6.04 -36.01 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -4.34 Total: 11.41 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: -1.54 Total: 8.10 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.23 Total: -49.76 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.07 Total: -10.96 kcal Atomic # 9 Polarization: -14.63 SS G_CDS: 0.10 Total: -14.53 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.97 -6.04 -36.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047568.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.721 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds