Wall clock time and date at job start Tue Mar 31 2020 01:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00010 * 2 1 4 4 H 1.48498 * 109.47352 * 269.99693 * 3 2 1 5 5 H 1.48498 * 109.47572 * 30.00127 * 3 2 1 6 6 H 1.48509 * 109.46903 * 149.99718 * 3 2 1 7 7 C 1.37874 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99652 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00363 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46868 * 59.99899 * 9 7 2 11 11 N 1.46497 * 109.47149 * 179.97438 * 9 7 2 12 12 C 1.34778 * 120.00031 * 205.00012 * 11 9 7 13 13 O 1.21281 * 119.99820 * 359.97438 * 12 11 9 14 14 C 1.50702 * 120.00303 * 180.02562 * 12 11 9 15 15 H 1.09006 * 110.43233 * 298.91206 * 14 12 11 16 16 C 1.54887 * 110.48595 * 61.44940 * 14 12 11 17 17 C 1.54890 * 102.91108 * 156.66283 * 16 14 12 18 18 C 1.54463 * 104.10368 * 322.30112 * 17 16 14 19 19 C 1.53877 * 106.68421 * 23.34437 * 18 17 16 20 20 H 1.08993 * 110.03177 * 119.44086 * 19 18 17 21 21 N 1.46898 * 110.02930 * 240.87359 * 19 18 17 22 22 C 1.52995 * 109.47142 * 300.00010 * 9 7 2 23 23 F 1.39906 * 109.47334 * 299.99957 * 22 9 7 24 24 F 1.39899 * 109.47412 * 59.99817 * 22 9 7 25 25 F 1.39905 * 109.47439 * 179.97438 * 22 9 7 26 26 H 0.97006 * 119.99299 * 0.02562 * 1 2 3 27 27 H 0.97002 * 120.00076 * 25.00087 * 11 9 7 28 28 H 1.09002 * 110.75856 * 275.07193 * 16 14 12 29 29 H 1.09006 * 110.75640 * 38.26179 * 16 14 12 30 30 H 1.09003 * 110.48855 * 80.83451 * 17 16 14 31 31 H 1.09003 * 110.48748 * 203.47148 * 17 16 14 32 32 H 1.08999 * 109.85715 * 264.10233 * 18 17 16 33 33 H 1.09003 * 110.15968 * 142.74863 * 18 17 16 34 34 H 1.00899 * 111.00188 * 297.15969 * 21 19 18 35 35 H 1.00901 * 111.00310 * 61.12280 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6246 -2.5570 -0.8897 11 7 2.2029 -3.6126 0.0005 12 6 1.8368 -4.8123 -0.4928 13 8 0.7190 -4.9700 -0.9362 14 6 2.8158 -5.9580 -0.4923 15 1 3.6908 -5.7110 -1.0936 16 6 3.2358 -6.3115 0.9561 17 6 3.6967 -7.7851 0.8328 18 6 2.7068 -8.4059 -0.1774 19 6 2.1458 -7.2447 -1.0168 20 1 2.3916 -7.3915 -2.0685 21 7 0.6892 -7.1588 -0.8470 22 6 0.3709 -2.5799 1.2494 23 9 1.1748 -2.5056 2.3921 24 9 -0.5382 -1.5165 1.2489 25 9 -0.3291 -3.7912 1.2492 26 1 -0.4849 0.8402 -0.0004 27 1 3.0968 -3.4866 0.3556 28 1 4.0575 -5.6760 1.2861 29 1 2.3875 -6.2277 1.6356 30 1 4.7150 -7.8353 0.4470 31 1 3.6281 -8.2883 1.7973 32 1 1.8982 -8.9057 0.3561 33 1 3.2240 -9.1167 -0.8218 34 1 0.2358 -7.9940 -1.1858 35 1 0.4473 -6.9814 0.1164 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580047568.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:42 Heat of formation + Delta-G solvation = -187.820790 kcal Electronic energy + Delta-G solvation = -23824.231904 eV Core-core repulsion = 19828.041817 eV Total energy + Delta-G solvation = -3996.190087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.36351 -47.99592 -47.68223 -40.99535 -38.43864 -36.25925 -34.43103 -33.07732 -31.07363 -29.19356 -27.48726 -26.53982 -23.84016 -22.20848 -21.38881 -20.54613 -19.10422 -18.79658 -18.58069 -18.20981 -17.80712 -17.04527 -16.73346 -15.92646 -15.37189 -15.16379 -15.06529 -14.90454 -14.63588 -14.57576 -14.41439 -14.26225 -14.08575 -13.97071 -13.78527 -13.40165 -12.95235 -12.79704 -12.59856 -12.56557 -12.20806 -11.99753 -11.98556 -11.72096 -11.51973 -11.46713 -10.65547 -10.40762 -9.81796 -8.91970 -8.18682 -6.49134 1.46563 1.47653 1.59018 1.97281 2.31297 2.48660 2.62787 2.96999 3.51728 3.61966 3.77535 3.84718 3.92912 4.10185 4.22810 4.41213 4.46956 4.53935 4.57129 4.61347 4.79364 5.00506 5.03035 5.13963 5.21629 5.29850 5.44085 5.53744 5.65285 5.73058 6.48554 6.56481 6.75414 6.99005 7.21083 7.68734 8.73833 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.027716 B = 0.005831 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.016397 B = 4801.010617 C = 5078.948676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.013 3.987 3 Si 0.982 3.018 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.258 1.258 7 C -0.561 4.561 8 H 0.090 0.910 9 C 0.255 3.745 10 H 0.041 0.959 11 N -0.716 5.716 12 C 0.495 3.505 13 O -0.524 6.524 14 C -0.106 4.106 15 H 0.121 0.879 16 C -0.116 4.116 17 C -0.112 4.112 18 C -0.152 4.152 19 C 0.103 3.897 20 H 0.083 0.917 21 N -0.824 5.824 22 C 0.415 3.585 23 F -0.205 7.205 24 F -0.154 7.154 25 F -0.217 7.217 26 H 0.267 0.733 27 H 0.406 0.594 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.333 0.667 35 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.259 -12.653 1.518 15.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.192 4.192 3 Si 0.805 3.195 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.182 1.182 7 C -0.598 4.598 8 H 0.108 0.892 9 C 0.147 3.853 10 H 0.059 0.941 11 N -0.368 5.368 12 C 0.282 3.718 13 O -0.398 6.398 14 C -0.127 4.127 15 H 0.139 0.861 16 C -0.154 4.154 17 C -0.150 4.150 18 C -0.192 4.192 19 C -0.010 4.010 20 H 0.101 0.899 21 N -0.354 5.354 22 C 0.359 3.641 23 F -0.187 7.187 24 F -0.135 7.135 25 F -0.199 7.199 26 H 0.077 0.923 27 H 0.242 0.758 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.146 0.854 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.261 -12.045 0.697 14.622 hybrid contribution 0.051 0.257 1.082 1.114 sum 8.312 -11.787 1.779 14.533 Atomic orbital electron populations 1.70555 1.07506 1.27971 1.45016 1.26015 0.95882 1.03727 0.93584 0.85184 0.78545 0.77203 0.78536 1.19571 1.21079 1.18214 1.21254 0.94445 0.88647 1.55419 0.89233 1.19159 0.89013 0.87803 0.89292 0.94115 1.46089 1.16637 1.10255 1.63848 1.21278 0.89357 0.83707 0.77505 1.90792 1.22206 1.81937 1.44855 1.22326 0.97848 0.92453 1.00087 0.86116 1.22512 1.01049 0.98488 0.93312 1.22323 0.99696 0.93448 0.99519 1.23090 0.99709 0.98047 0.98340 1.21944 0.87859 0.91762 0.99446 0.89881 1.58993 1.07335 1.42552 1.26533 1.23311 0.80789 0.72304 0.87745 1.92976 1.74231 1.96166 1.55303 1.93365 1.69112 1.54741 1.96330 1.93057 1.81537 1.48311 1.97011 0.92324 0.75834 0.89328 0.93267 0.89441 0.90692 0.92007 0.89774 0.85363 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.59 9.50 21.45 0.20 -49.39 16 2 C 0.01 0.67 5.20 84.65 0.44 1.11 16 3 Si 0.98 41.10 29.54 68.60 2.03 43.12 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 7 C -0.56 -28.80 8.46 25.60 0.22 -28.59 16 8 H 0.09 4.24 7.74 -2.91 -0.02 4.22 16 9 C 0.25 12.98 2.21 44.24 0.10 13.07 16 10 H 0.04 2.42 7.58 -2.38 -0.02 2.40 16 11 N -0.72 -28.97 4.93 -446.11 -2.20 -31.17 16 12 C 0.50 18.99 6.41 87.66 0.56 19.55 16 13 O -0.52 -24.46 12.08 -3.03 -0.04 -24.50 16 14 C -0.11 -2.76 3.18 -10.47 -0.03 -2.79 16 15 H 0.12 2.62 8.14 -2.38 -0.02 2.60 16 16 C -0.12 -2.51 6.25 31.88 0.20 -2.31 16 17 C -0.11 -1.78 6.85 31.74 0.22 -1.56 16 18 C -0.15 -2.62 6.58 31.39 0.21 -2.41 16 19 C 0.10 2.47 3.85 45.64 0.18 2.65 16 20 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 21 N -0.82 -24.57 6.22 -165.68 -1.03 -25.60 16 22 C 0.41 21.78 2.81 71.98 0.20 21.98 16 23 F -0.20 -10.15 16.94 44.97 0.76 -9.39 16 24 F -0.15 -8.89 12.91 44.97 0.58 -8.31 16 25 F -0.22 -11.26 15.68 44.97 0.71 -10.55 16 26 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 27 H 0.41 13.99 8.53 -92.71 -0.79 13.20 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.05 1.30 8.05 -2.38 -0.02 1.28 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.09 7.92 -2.39 -0.02 1.07 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.33 8.28 9.07 -89.69 -0.81 7.47 16 35 H 0.33 10.66 8.42 -89.69 -0.76 9.90 16 Total: -1.00 -65.61 295.37 2.09 -63.52 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: -1.20 Total: 31.55 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: 2.28 Total: 20.71 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -3.02 Total: -106.16 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.04 Total: -24.50 kcal Atomic # 9 Polarization: -30.29 SS G_CDS: 2.05 Total: -28.24 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.12 kcal Total: -65.61 2.09 -63.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047568.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.300 kcal (2) G-P(sol) polarization free energy of solvation -65.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds