Wall clock time and date at job start Tue Mar 31 2020 01:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86803 * 120.00103 * 2 1 4 4 H 1.48501 * 109.46711 * 270.00317 * 3 2 1 5 5 H 1.48494 * 109.47163 * 29.99568 * 3 2 1 6 6 H 1.48495 * 109.47024 * 149.99755 * 3 2 1 7 7 C 1.38650 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00387 * 180.02562 * 7 2 1 9 9 O 1.34832 * 120.00158 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00486 * 185.05869 * 9 7 2 11 11 C 1.38876 * 120.06580 * 354.46630 * 10 9 7 12 12 C 1.38100 * 119.93052 * 180.02562 * 11 10 9 13 13 C 1.38300 * 120.07060 * 0.02562 * 12 11 10 14 14 C 1.50696 * 119.93296 * 179.97438 * 13 12 11 15 15 N 1.46500 * 109.46967 * 90.00489 * 14 13 12 16 16 C 1.34778 * 120.00039 * 180.02562 * 15 14 13 17 17 O 1.21283 * 120.00019 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00067 * 179.72798 * 16 15 14 19 19 H 1.08997 * 109.47534 * 55.27118 * 18 16 15 20 20 O 1.42897 * 109.47159 * 175.27384 * 18 16 15 21 21 C 1.53003 * 109.46955 * 295.27003 * 18 16 15 22 22 N 1.46893 * 109.47414 * 180.02562 * 21 18 16 23 23 C 1.38304 * 120.13563 * 0.26015 * 13 12 11 24 24 C 1.38098 * 120.06757 * 359.44571 * 23 13 12 25 25 H 0.97001 * 119.99934 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.03841 * 359.97438 * 11 10 9 27 27 H 1.07999 * 119.96392 * 180.02562 * 12 11 10 28 28 H 1.08997 * 109.47412 * 330.00690 * 14 13 12 29 29 H 1.08994 * 109.47337 * 210.00302 * 14 13 12 30 30 H 0.97000 * 120.00393 * 359.97438 * 15 14 13 31 31 H 0.96702 * 114.00565 * 59.99212 * 20 18 16 32 32 H 1.09004 * 109.46691 * 300.00343 * 21 18 16 33 33 H 1.09003 * 109.47182 * 59.99416 * 21 18 16 34 34 H 1.00900 * 110.99869 * 56.04453 * 22 21 18 35 35 H 1.00902 * 110.99836 * 179.97438 * 22 21 18 36 36 H 1.08001 * 119.96589 * 179.70456 * 23 13 12 37 37 H 1.07999 * 120.03549 * 180.27434 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4471 2.6527 0.6999 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3684 0.0016 10 6 2.0699 -3.5045 0.1087 11 6 3.4571 -3.4394 0.0952 12 6 4.2023 -4.5970 0.2039 13 6 3.5686 -5.8203 0.3254 14 6 4.3849 -7.0816 0.4432 15 7 4.6564 -7.3573 1.8562 16 6 5.3758 -8.4424 2.2048 17 8 5.7980 -9.1908 1.3489 18 6 5.6603 -8.7228 3.6580 19 1 4.7218 -8.7633 4.2107 20 8 6.3381 -9.9751 3.7776 21 6 6.5409 -7.6096 4.2292 22 7 6.8188 -7.8831 5.6454 23 6 2.1873 -5.8890 0.3332 24 6 1.4366 -4.7344 0.2311 25 1 -0.4850 0.8401 -0.0004 26 1 3.9526 -2.4846 -0.0009 27 1 5.2811 -4.5470 0.1939 28 1 5.3272 -6.9557 -0.0900 29 1 3.8310 -7.9145 0.0104 30 1 4.3190 -6.7587 2.5408 31 1 7.1833 -10.0113 3.3092 32 1 7.4795 -7.5691 3.6763 33 1 6.0240 -6.6543 4.1378 34 1 7.2401 -8.7925 5.7622 35 1 7.3997 -7.1617 6.0458 36 1 1.6953 -6.8462 0.4235 37 1 0.3580 -4.7883 0.2417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052502.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:06 Heat of formation + Delta-G solvation = -94.624795 kcal Electronic energy + Delta-G solvation = -20856.611289 eV Core-core repulsion = 17406.319224 eV Total energy + Delta-G solvation = -3450.292065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.23015 -39.16163 -37.37671 -36.72462 -34.73848 -33.95638 -32.42131 -30.51275 -30.29234 -28.51455 -25.88197 -24.74528 -23.13816 -22.10945 -20.74312 -20.69190 -18.31259 -18.09366 -17.07110 -16.91903 -16.75171 -15.58578 -15.32311 -15.02249 -14.61947 -14.57721 -14.23862 -14.12553 -13.79100 -13.73473 -13.35862 -12.91724 -12.83407 -12.60467 -12.26229 -12.02360 -11.72741 -11.45588 -11.10100 -10.99571 -10.86011 -10.74366 -10.52629 -9.76541 -9.47761 -9.15411 -9.09837 -8.94939 -8.34253 -7.37991 -6.56951 -4.16051 1.99787 2.07614 2.40308 3.04030 3.06339 3.11349 3.19132 3.85155 3.86845 4.24363 4.44627 4.48427 4.66693 4.75703 4.97623 5.11044 5.18317 5.22653 5.33444 5.37810 5.59741 5.73556 5.83196 6.07004 6.29163 6.36089 6.54460 6.62805 6.74807 6.90221 7.00994 7.08154 7.14404 7.21189 7.30287 7.45521 7.66221 7.87502 8.05773 8.88230 9.55909 10.60464 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.025401 B = 0.003143 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.072343 B = 8907.152441 C = 9515.055530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.172 6.172 10 C 0.161 3.839 11 C -0.237 4.237 12 C -0.051 4.051 13 C -0.217 4.217 14 C 0.177 3.823 15 N -0.715 5.715 16 C 0.481 3.519 17 O -0.541 6.541 18 C 0.093 3.907 19 H 0.132 0.868 20 O -0.537 6.537 21 C 0.035 3.965 22 N -0.844 5.844 23 C -0.054 4.054 24 C -0.195 4.195 25 H 0.272 0.728 26 H 0.128 0.872 27 H 0.107 0.893 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.403 0.597 31 H 0.380 0.620 32 H 0.035 0.965 33 H 0.089 0.911 34 H 0.348 0.652 35 H 0.346 0.654 36 H 0.113 0.887 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.745 -11.007 6.907 17.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.106 3.894 11 C -0.256 4.256 12 C -0.070 4.070 13 C -0.219 4.219 14 C 0.055 3.945 15 N -0.368 5.368 16 C 0.266 3.734 17 O -0.418 6.418 18 C 0.030 3.970 19 H 0.149 0.851 20 O -0.341 6.341 21 C -0.097 4.097 22 N -0.375 5.375 23 C -0.073 4.073 24 C -0.214 4.214 25 H 0.082 0.918 26 H 0.146 0.854 27 H 0.125 0.875 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.238 0.762 31 H 0.228 0.772 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.131 0.869 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.296 -11.410 6.707 16.769 hybrid contribution 1.723 1.379 -0.418 2.246 sum 12.019 -10.031 6.289 16.871 Atomic orbital electron populations 1.70035 1.06026 1.27942 1.45240 1.25326 0.95865 0.98960 0.96286 0.85690 0.78928 0.79882 0.78823 1.19774 1.20142 1.19125 1.21359 0.91871 0.80708 1.53100 0.88904 1.83979 1.34528 1.11582 1.77377 1.19439 0.90313 0.88057 0.91574 1.21155 0.93787 0.98946 1.11758 1.20625 0.98310 0.91631 0.96384 1.19181 0.93578 0.93515 1.15587 1.20014 0.98550 0.95063 0.80833 1.46436 1.54241 1.26326 1.09826 1.21509 0.78774 0.81179 0.91974 1.90714 1.51995 1.47467 1.51653 1.21955 0.98249 0.85002 0.91818 0.85057 1.86609 1.38891 1.33150 1.75424 1.22373 0.98729 0.98858 0.89708 1.58583 1.55983 1.08161 1.14792 1.20538 0.92745 0.96872 0.97104 1.20224 0.99727 0.90231 1.11223 0.91819 0.85404 0.87463 0.91536 0.91417 0.76164 0.77221 0.94655 0.89219 0.83873 0.84142 0.86920 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.38 13.67 55.48 0.76 -23.62 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.71 29.55 -169.99 -5.02 14.69 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.39 -10.56 9.49 30.88 0.29 -10.27 16 8 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 9 O -0.17 -4.71 9.76 0.05 0.00 -4.70 16 10 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 11 C -0.24 -4.77 9.17 -39.40 -0.36 -5.13 16 12 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 13 C -0.22 -3.33 5.25 -104.58 -0.55 -3.88 16 14 C 0.18 2.36 5.80 -5.20 -0.03 2.32 16 15 N -0.72 -8.18 5.51 -61.48 -0.34 -8.52 16 16 C 0.48 5.80 7.17 -10.98 -0.08 5.72 16 17 O -0.54 -8.53 16.32 -14.31 -0.23 -8.76 16 18 C 0.09 0.87 3.65 -27.88 -0.10 0.77 16 19 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 20 O -0.54 -5.40 12.33 -55.09 -0.68 -6.08 16 21 C 0.04 0.27 6.44 -3.83 -0.02 0.24 16 22 N -0.84 -5.99 9.62 -10.37 -0.10 -6.09 16 23 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 24 C -0.19 -3.83 9.99 -39.40 -0.39 -4.23 16 25 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.13 2.59 5.64 -52.48 -0.30 2.30 16 27 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 29 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 30 H 0.40 4.04 8.23 -40.82 -0.34 3.70 16 31 H 0.38 2.95 8.79 45.56 0.40 3.35 16 32 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.66 7.91 -51.93 -0.41 0.25 16 34 H 0.35 2.29 8.38 -39.29 -0.33 1.97 16 35 H 0.35 1.92 9.08 -39.29 -0.36 1.56 16 36 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 324.74 15.07 4.89 4.89 Total: -1.00 -31.81 324.74 -6.78 -38.59 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -3.69 Total: 12.16 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -2.37 Total: -12.56 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.32 Total: -38.23 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.91 Total: -19.55 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.81 -6.78 -38.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052502.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.030 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds