Wall clock time and date at job start Tue Mar 31 2020 01:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47124 * 227.58736 * 3 2 1 5 5 C 1.37097 * 120.00264 * 274.00102 * 4 3 2 6 6 H 1.07997 * 120.00471 * 185.38208 * 5 4 3 7 7 C 1.38959 * 119.99676 * 5.37810 * 5 4 3 8 8 N 1.31409 * 119.99847 * 24.28568 * 7 5 4 9 9 Si 1.86798 * 119.99856 * 204.28246 * 7 5 4 10 10 H 1.48504 * 109.46797 * 90.00389 * 9 7 5 11 11 H 1.48503 * 109.47188 * 209.99797 * 9 7 5 12 12 H 1.48498 * 109.47318 * 330.00389 * 9 7 5 13 13 C 1.34779 * 120.00115 * 94.00323 * 4 3 2 14 14 O 1.21297 * 120.00184 * 180.02562 * 13 4 3 15 15 C 1.50698 * 119.99859 * 359.97438 * 13 4 3 16 16 H 1.09001 * 110.04006 * 60.01421 * 15 13 4 17 17 C 1.54012 * 110.06400 * 298.54970 * 15 13 4 18 18 C 1.54315 * 106.57880 * 240.34338 * 17 15 13 19 19 C 1.55000 * 104.26341 * 23.48744 * 18 17 15 20 20 C 1.53653 * 110.05734 * 181.52647 * 15 13 4 21 21 O 1.43059 * 110.65479 * 337.34817 * 20 15 13 22 22 C 1.44962 * 104.60563 * 213.72374 * 21 20 15 23 23 C 1.54958 * 101.82783 * 35.40119 * 22 21 20 24 24 O 1.42688 * 110.84963 * 215.48599 * 20 15 13 25 25 H 1.09000 * 109.47046 * 347.58616 * 3 2 1 26 26 H 1.09008 * 109.47191 * 107.58730 * 3 2 1 27 27 H 0.97003 * 119.99633 * 179.97438 * 8 7 5 28 28 H 1.09001 * 110.03478 * 359.62259 * 17 15 13 29 29 H 1.08997 * 110.04107 * 121.06286 * 17 15 13 30 30 H 1.09000 * 110.47359 * 142.18370 * 18 17 15 31 31 H 1.08997 * 110.47183 * 264.79275 * 18 17 15 32 32 H 1.09002 * 110.76355 * 80.98148 * 19 18 17 33 33 H 1.09001 * 110.76274 * 204.18873 * 19 18 17 34 34 H 1.09000 * 110.94848 * 277.26424 * 22 21 20 35 35 H 1.08997 * 110.95495 * 153.53737 * 22 21 20 36 36 H 1.08997 * 110.69275 * 206.42905 * 23 22 21 37 37 H 1.08998 * 110.84168 * 83.29698 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 0.9324 1.0197 5 6 3.2457 2.2615 0.7185 6 1 3.6866 2.9326 1.4407 7 6 2.8303 2.7451 -0.5162 8 7 1.8998 2.1090 -1.1918 9 14 3.5946 4.2994 -1.2157 10 1 4.7818 3.9426 -2.0334 11 1 2.5999 5.0004 -2.0668 12 1 4.0098 5.1909 -0.1030 13 6 3.3975 0.4831 2.2541 14 8 3.8011 1.2547 3.0986 15 6 3.2324 -0.9777 2.5854 16 1 3.8609 -1.5824 1.9317 17 6 1.7569 -1.3911 2.4302 18 6 1.2913 -1.8895 3.8144 19 6 2.2587 -1.2035 4.8125 20 6 3.6026 -1.2298 4.0552 21 8 4.4662 -0.1984 4.5421 22 6 5.3423 -0.8688 5.4825 23 6 5.5254 -2.2546 4.8136 24 8 4.2372 -2.4986 4.2086 25 1 2.9717 -1.0028 0.2209 26 1 2.9712 0.3114 -0.9797 27 1 1.6096 2.4468 -2.0535 28 1 1.1593 -0.5334 2.1216 29 1 1.6687 -2.1919 1.6959 30 1 0.2638 -1.5798 4.0053 31 1 1.3820 -2.9737 3.8796 32 1 1.9466 -0.1780 5.0102 33 1 2.3236 -1.7719 5.7403 34 1 4.8655 -0.9665 6.4578 35 1 6.2958 -0.3475 5.5668 36 1 5.7505 -3.0160 5.5603 37 1 6.3067 -2.2186 4.0545 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584456355.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:38 Heat of formation + Delta-G solvation = -67.610501 kcal Electronic energy + Delta-G solvation = -23475.002433 eV Core-core repulsion = 20025.881796 eV Total energy + Delta-G solvation = -3449.120637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.73756 -38.74452 -35.89238 -35.70467 -34.65477 -34.10906 -31.83267 -29.62007 -29.06385 -27.28386 -26.33651 -24.67448 -23.07252 -21.05533 -20.62949 -18.90216 -17.90348 -17.13390 -16.48798 -16.11641 -15.79458 -15.28695 -15.06657 -14.68949 -14.16910 -13.86871 -13.58441 -13.25286 -13.01882 -12.81345 -12.51721 -12.22976 -12.01747 -11.93673 -11.78374 -11.52659 -11.23550 -11.15233 -11.00292 -10.84338 -10.79089 -10.54814 -10.36477 -10.23606 -10.17550 -9.88566 -9.18434 -9.15577 -8.32729 -8.04423 -6.47450 -3.88813 3.13167 3.24920 3.29171 3.56223 3.67929 3.88467 4.09670 4.18729 4.25846 4.69698 4.78767 4.79440 4.90479 4.95972 5.06468 5.25914 5.26491 5.37486 5.57635 5.65540 5.66784 5.69133 5.74841 5.89873 5.95918 6.02382 6.11058 6.22668 6.25089 6.28808 6.40112 6.62705 6.64754 7.49862 7.51818 7.92867 8.35515 8.86835 9.07476 9.26806 9.83676 10.57760 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022366 B = 0.006680 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.606708 B = 4190.857388 C = 5030.786833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C 0.258 3.742 3 C 0.219 3.781 4 N -0.449 5.449 5 C -0.309 4.309 6 H 0.112 0.888 7 C 0.030 3.970 8 N -0.880 5.880 9 Si 0.926 3.074 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.465 3.535 14 O -0.537 6.537 15 C -0.113 4.113 16 H 0.098 0.902 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.140 4.140 20 C 0.268 3.732 21 O -0.303 6.303 22 C -0.002 4.002 23 C 0.020 3.980 24 O -0.374 6.374 25 H 0.080 0.920 26 H 0.127 0.873 27 H 0.273 0.727 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.978 -9.957 7.155 13.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.162 5.162 2 C -0.060 4.060 3 C 0.091 3.909 4 N -0.171 5.171 5 C -0.436 4.436 6 H 0.129 0.871 7 C -0.173 4.173 8 N -0.520 5.520 9 Si 0.752 3.248 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.194 1.194 13 C 0.252 3.748 14 O -0.417 6.417 15 C -0.135 4.135 16 H 0.117 0.883 17 C -0.158 4.158 18 C -0.154 4.154 19 C -0.178 4.178 20 C 0.190 3.810 21 O -0.221 6.221 22 C -0.079 4.079 23 C -0.057 4.057 24 O -0.296 6.296 25 H 0.097 0.903 26 H 0.145 0.855 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.331 -9.457 7.275 12.693 hybrid contribution 0.742 0.724 -0.540 1.169 sum 5.073 -8.733 6.735 12.139 Atomic orbital electron populations 1.80889 1.13528 1.11600 1.10188 1.29073 0.95226 0.90372 0.91282 1.18929 0.81995 0.92877 0.97061 1.43676 1.57224 1.07917 1.08314 1.19769 1.38905 0.84214 1.00684 0.87081 1.25184 0.95248 0.99792 0.97033 1.69833 1.24770 1.41835 1.15595 0.85922 0.78798 0.81046 0.78992 1.20221 1.21230 1.19413 1.19619 0.84160 0.88585 0.82430 1.90613 1.48388 1.56721 1.45966 1.22143 0.98400 0.97369 0.95628 0.88348 1.22371 0.93948 1.01702 0.97804 1.22243 0.98828 1.00000 0.94306 1.22988 0.94305 1.02291 0.98204 1.23375 0.89543 0.75237 0.92857 1.89907 1.47374 1.27793 1.57053 1.24440 0.96599 0.92404 0.94453 1.24209 0.86701 0.97533 0.97246 1.88798 1.29805 1.28492 1.82455 0.90254 0.85509 0.91640 0.90201 0.90993 0.91359 0.91209 0.89282 0.91059 0.91499 0.87953 0.88897 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.48 18.40 42.15 0.78 -10.70 16 2 C 0.26 5.77 10.21 -20.76 -0.21 5.55 16 3 C 0.22 4.48 4.76 -6.83 -0.03 4.44 16 4 N -0.45 -10.64 2.57 -117.93 -0.30 -10.94 16 5 C -0.31 -8.07 9.44 -14.93 -0.14 -8.21 16 6 H 0.11 3.09 7.28 -52.49 -0.38 2.71 16 7 C 0.03 0.74 4.97 -17.47 -0.09 0.66 16 8 N -0.88 -22.21 8.87 55.50 0.49 -21.72 16 9 Si 0.93 19.98 29.62 -169.99 -5.03 14.94 16 10 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 11 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 C 0.46 10.68 6.72 -10.99 -0.07 10.61 16 14 O -0.54 -14.05 13.31 -19.47 -0.26 -14.31 16 15 C -0.11 -2.08 2.17 -90.91 -0.20 -2.28 16 16 H 0.10 1.64 7.36 -51.93 -0.38 1.26 16 17 C -0.12 -2.06 4.35 -25.51 -0.11 -2.17 16 18 C -0.12 -1.75 6.83 -24.99 -0.17 -1.92 16 19 C -0.14 -2.23 6.31 -25.00 -0.16 -2.39 16 20 C 0.27 4.63 1.04 -25.72 -0.03 4.60 16 21 O -0.30 -5.74 7.78 -67.91 -0.53 -6.27 16 22 C 0.00 -0.02 7.96 38.19 0.30 0.28 16 23 C 0.02 0.23 8.08 38.19 0.31 0.54 16 24 O -0.37 -5.71 10.91 -59.03 -0.64 -6.36 16 25 H 0.08 1.30 5.87 -51.93 -0.30 0.99 16 26 H 0.13 2.66 6.35 -51.92 -0.33 2.33 16 27 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 28 H 0.08 1.62 5.10 -51.93 -0.26 1.35 16 29 H 0.07 1.09 8.02 -51.93 -0.42 0.67 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 299.05 15.07 4.51 4.51 Total: -1.00 -31.37 299.05 -6.19 -37.56 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.60 Total: 3.57 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -0.60 Total: 9.72 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.96 Total: -43.36 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -1.43 Total: -26.94 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.94 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.37 -6.19 -37.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584456355.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.055 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds