Wall clock time and date at job start Tue Mar 31 2020 01:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47124 * 227.58736 * 3 2 1 5 5 C 1.37097 * 120.00264 * 274.00102 * 4 3 2 6 6 H 1.07997 * 120.00471 * 185.38208 * 5 4 3 7 7 C 1.38959 * 119.99676 * 5.37810 * 5 4 3 8 8 N 1.31409 * 119.99847 * 24.28568 * 7 5 4 9 9 Si 1.86798 * 119.99856 * 204.28246 * 7 5 4 10 10 H 1.48504 * 109.46797 * 90.00389 * 9 7 5 11 11 H 1.48503 * 109.47188 * 209.99797 * 9 7 5 12 12 H 1.48498 * 109.47318 * 330.00389 * 9 7 5 13 13 C 1.34779 * 120.00115 * 94.00323 * 4 3 2 14 14 O 1.21297 * 120.00184 * 180.02562 * 13 4 3 15 15 C 1.50698 * 119.99859 * 359.97438 * 13 4 3 16 16 H 1.09001 * 110.04006 * 60.01421 * 15 13 4 17 17 C 1.54012 * 110.06400 * 298.54970 * 15 13 4 18 18 C 1.54315 * 106.57880 * 240.34338 * 17 15 13 19 19 C 1.55000 * 104.26341 * 23.48744 * 18 17 15 20 20 C 1.53653 * 110.05734 * 181.52647 * 15 13 4 21 21 O 1.43059 * 110.65479 * 337.34817 * 20 15 13 22 22 C 1.44962 * 104.60563 * 213.72374 * 21 20 15 23 23 C 1.54958 * 101.82783 * 35.40119 * 22 21 20 24 24 O 1.42688 * 110.84963 * 215.48599 * 20 15 13 25 25 H 1.09000 * 109.47046 * 347.58616 * 3 2 1 26 26 H 1.09008 * 109.47191 * 107.58730 * 3 2 1 27 27 H 0.97003 * 119.99633 * 179.97438 * 8 7 5 28 28 H 1.09001 * 110.03478 * 359.62259 * 17 15 13 29 29 H 1.08997 * 110.04107 * 121.06286 * 17 15 13 30 30 H 1.09000 * 110.47359 * 142.18370 * 18 17 15 31 31 H 1.08997 * 110.47183 * 264.79275 * 18 17 15 32 32 H 1.09002 * 110.76355 * 80.98148 * 19 18 17 33 33 H 1.09001 * 110.76274 * 204.18873 * 19 18 17 34 34 H 1.09000 * 110.94848 * 277.26424 * 22 21 20 35 35 H 1.08997 * 110.95495 * 153.53737 * 22 21 20 36 36 H 1.08997 * 110.69275 * 206.42905 * 23 22 21 37 37 H 1.08998 * 110.84168 * 83.29698 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 0.9324 1.0197 5 6 3.2457 2.2615 0.7185 6 1 3.6866 2.9326 1.4407 7 6 2.8303 2.7451 -0.5162 8 7 1.8998 2.1090 -1.1918 9 14 3.5946 4.2994 -1.2157 10 1 4.7818 3.9426 -2.0334 11 1 2.5999 5.0004 -2.0668 12 1 4.0098 5.1909 -0.1030 13 6 3.3975 0.4831 2.2541 14 8 3.8011 1.2547 3.0986 15 6 3.2324 -0.9777 2.5854 16 1 3.8609 -1.5824 1.9317 17 6 1.7569 -1.3911 2.4302 18 6 1.2913 -1.8895 3.8144 19 6 2.2587 -1.2035 4.8125 20 6 3.6026 -1.2298 4.0552 21 8 4.4662 -0.1984 4.5421 22 6 5.3423 -0.8688 5.4825 23 6 5.5254 -2.2546 4.8136 24 8 4.2372 -2.4986 4.2086 25 1 2.9717 -1.0028 0.2209 26 1 2.9712 0.3114 -0.9797 27 1 1.6096 2.4468 -2.0535 28 1 1.1593 -0.5334 2.1216 29 1 1.6687 -2.1919 1.6959 30 1 0.2638 -1.5798 4.0053 31 1 1.3820 -2.9737 3.8796 32 1 1.9466 -0.1780 5.0102 33 1 2.3236 -1.7719 5.7403 34 1 4.8655 -0.9665 6.4578 35 1 6.2958 -0.3475 5.5668 36 1 5.7505 -3.0160 5.5603 37 1 6.3067 -2.2186 4.0545 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584456355.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:38 Heat of formation + Delta-G solvation = -87.370340 kcal Electronic energy + Delta-G solvation = -23475.859284 eV Core-core repulsion = 20025.881796 eV Total energy + Delta-G solvation = -3449.977488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.03721 -40.34176 -37.56300 -37.20635 -36.07420 -35.74068 -33.71934 -30.73715 -30.48649 -29.00615 -27.62076 -26.48081 -24.09460 -22.56457 -21.89092 -20.46276 -19.75165 -18.50685 -18.03469 -17.43082 -17.22951 -16.78760 -16.31646 -16.29052 -15.89509 -15.13985 -14.97259 -14.77190 -14.64907 -14.37427 -13.83297 -13.70408 -13.48157 -13.35050 -13.27972 -13.14051 -12.94282 -12.82353 -12.27794 -12.26139 -12.12504 -12.10965 -12.06744 -11.99441 -11.56069 -11.04510 -10.94318 -10.44488 -10.12791 -9.93256 -8.39897 -5.87573 1.39044 1.46729 1.56902 1.86307 2.11047 2.33234 2.39173 2.51992 2.98368 3.02130 3.27520 3.45704 3.54815 3.71183 3.81284 3.98279 4.12629 4.17048 4.28350 4.34774 4.40588 4.55685 4.60628 4.67834 4.71024 4.80259 4.89152 4.94365 4.97517 5.03012 5.10710 5.13922 5.34629 5.50590 6.01411 6.34733 6.45888 7.10225 7.16984 7.40597 8.01562 8.62833 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022366 B = 0.006680 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.606708 B = 4190.857388 C = 5030.786833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.270 3.730 3 C 0.221 3.779 4 N -0.461 5.461 5 C -0.339 4.339 6 H 0.081 0.919 7 C 0.005 3.995 8 N -0.892 5.892 9 Si 0.984 3.016 10 H -0.261 1.261 11 H -0.285 1.285 12 H -0.280 1.280 13 C 0.460 3.540 14 O -0.577 6.577 15 C -0.111 4.111 16 H 0.119 0.881 17 C -0.118 4.118 18 C -0.110 4.110 19 C -0.139 4.139 20 C 0.268 3.732 21 O -0.347 6.347 22 C -0.010 4.010 23 C 0.019 3.981 24 O -0.377 6.377 25 H 0.125 0.875 26 H 0.123 0.877 27 H 0.275 0.725 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.131 0.869 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.787 -11.960 7.213 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.047 4.047 3 C 0.095 3.905 4 N -0.183 5.183 5 C -0.467 4.467 6 H 0.099 0.901 7 C -0.196 4.196 8 N -0.531 5.531 9 Si 0.809 3.191 10 H -0.186 1.186 11 H -0.210 1.210 12 H -0.205 1.205 13 C 0.249 3.751 14 O -0.459 6.459 15 C -0.133 4.133 16 H 0.137 0.863 17 C -0.156 4.156 18 C -0.147 4.147 19 C -0.177 4.177 20 C 0.189 3.811 21 O -0.267 6.267 22 C -0.087 4.087 23 C -0.056 4.056 24 O -0.298 6.298 25 H 0.143 0.857 26 H 0.140 0.860 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.133 0.867 36 H 0.148 0.852 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.140 -11.491 7.325 14.564 hybrid contribution 0.541 1.364 -0.483 1.545 sum 5.681 -10.126 6.842 13.477 Atomic orbital electron populations 1.80879 1.14490 1.12647 1.11307 1.29410 0.95565 0.89433 0.90264 1.19144 0.80817 0.94446 0.96136 1.43818 1.57479 1.07616 1.09387 1.19606 1.40451 0.85528 1.01066 0.90065 1.25776 0.94998 1.02264 0.96587 1.69912 1.24779 1.42815 1.15612 0.85068 0.78377 0.77771 0.77917 1.18604 1.21033 1.20484 1.20459 0.82543 0.90487 0.81639 1.90583 1.49747 1.58501 1.47101 1.22151 0.99749 0.93912 0.97460 0.86271 1.22349 0.92395 1.01071 0.99817 1.22258 0.98598 1.01348 0.92494 1.22945 0.94043 1.01120 0.99544 1.23311 0.90050 0.75784 0.91918 1.89862 1.48616 1.29687 1.58543 1.24738 0.96521 0.93052 0.94339 1.24455 0.85439 0.97687 0.98065 1.88769 1.31101 1.27094 1.82849 0.85730 0.85955 0.91485 0.93643 0.88558 0.91093 0.88572 0.92181 0.88673 0.89946 0.86738 0.85159 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.34 18.40 20.01 0.37 -23.97 16 2 C 0.27 11.96 10.21 89.44 0.91 12.87 16 3 C 0.22 8.87 4.76 84.57 0.40 9.27 16 4 N -0.46 -22.10 2.57 -645.41 -1.66 -23.76 16 5 C -0.34 -18.23 9.44 84.04 0.79 -17.43 16 6 H 0.08 4.77 7.28 -2.91 -0.02 4.74 16 7 C 0.01 0.26 4.97 84.93 0.42 0.68 16 8 N -0.89 -44.86 8.87 21.67 0.19 -44.67 16 9 Si 0.98 41.16 29.62 68.60 2.03 43.20 16 10 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 12 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 13 C 0.46 21.42 6.72 87.66 0.59 22.01 16 14 O -0.58 -31.33 13.31 20.83 0.28 -31.05 16 15 C -0.11 -3.94 2.17 -10.98 -0.02 -3.96 16 16 H 0.12 3.66 7.36 -2.39 -0.02 3.64 16 17 C -0.12 -3.85 4.35 31.38 0.14 -3.72 16 18 C -0.11 -3.05 6.83 31.72 0.22 -2.84 16 19 C -0.14 -4.24 6.31 31.71 0.20 -4.04 16 20 C 0.27 8.85 1.04 31.25 0.03 8.89 16 21 O -0.35 -13.10 7.78 -117.73 -0.92 -14.02 16 22 C -0.01 -0.25 7.96 72.65 0.58 0.32 16 23 C 0.02 0.40 8.08 72.65 0.59 0.98 16 24 O -0.38 -10.32 10.91 -126.23 -1.38 -11.70 16 25 H 0.13 3.78 5.87 -2.39 -0.01 3.77 16 26 H 0.12 5.05 6.35 -2.38 -0.02 5.03 16 27 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 28 H 0.04 1.82 5.10 -2.39 -0.01 1.80 16 29 H 0.10 2.63 8.02 -2.39 -0.02 2.61 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.06 2.16 8.14 -2.39 -0.02 2.15 16 33 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -69.66 299.05 4.86 -64.80 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 1.10 Total: 18.13 kcal Atomic # 6 Polarization: 18.19 SS G_CDS: 4.85 Total: 23.04 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -1.10 Total: -92.41 kcal Atomic # 8 Polarization: -54.75 SS G_CDS: -2.02 Total: -56.76 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.20 kcal Total: -69.66 4.86 -64.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584456355.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.567 kcal (2) G-P(sol) polarization free energy of solvation -69.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds