Wall clock time and date at job start Tue Mar 31 2020 02:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47413 * 2 1 4 4 C 1.50699 * 109.47393 * 180.02562 * 3 2 1 5 5 N 1.34700 * 125.90080 * 265.12769 * 4 3 2 6 6 H 0.97001 * 124.81789 * 0.03320 * 5 4 3 7 7 C 1.36428 * 110.36572 * 180.27778 * 5 4 3 8 8 C 1.34448 * 109.08099 * 359.76095 * 7 5 4 9 9 C 1.37839 * 125.90340 * 84.99572 * 4 3 2 10 10 C 1.47185 * 127.01604 * 0.02562 * 9 4 3 11 11 O 1.21658 * 119.99864 * 353.53289 * 10 9 4 12 12 N 1.34779 * 120.00086 * 173.52153 * 10 9 4 13 13 C 1.36975 * 120.00148 * 174.34313 * 12 10 9 14 14 H 1.08004 * 119.99746 * 7.05704 * 13 12 10 15 15 C 1.38966 * 120.00006 * 186.78361 * 13 12 10 16 16 N 1.31421 * 120.00142 * 22.78501 * 15 13 12 17 17 Si 1.86801 * 119.99798 * 202.79091 * 15 13 12 18 18 H 1.48500 * 109.47368 * 89.99861 * 17 15 13 19 19 H 1.48509 * 109.47095 * 209.99801 * 17 15 13 20 20 H 1.48500 * 109.47315 * 329.99437 * 17 15 13 21 21 C 1.46501 * 119.99899 * 354.35060 * 12 10 9 22 22 C 1.50705 * 109.47269 * 89.89993 * 21 12 10 23 23 O 1.20824 * 119.99683 * 0.02562 * 22 21 12 24 24 O 1.34228 * 120.00001 * 179.97438 * 22 21 12 25 25 H 1.09000 * 109.47471 * 59.99832 * 1 2 3 26 26 H 1.09002 * 109.47276 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46930 * 299.99503 * 1 2 3 28 28 H 1.09000 * 109.46995 * 239.99735 * 2 1 3 29 29 H 1.09000 * 109.47471 * 120.00168 * 2 1 3 30 30 H 1.09000 * 109.47256 * 59.99896 * 3 2 1 31 31 H 1.08998 * 109.47093 * 299.99983 * 3 2 1 32 32 H 1.07992 * 125.46224 * 179.76000 * 7 5 4 33 33 H 1.08009 * 126.80670 * 180.02562 * 8 7 5 34 34 H 0.97000 * 119.99956 * 180.02562 * 16 15 13 35 35 H 1.08995 * 109.47089 * 209.90348 * 21 12 10 36 36 H 1.08995 * 109.47087 * 329.90007 * 21 12 10 37 37 H 0.96698 * 117.00028 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3373 1.5349 1.0862 6 1 4.0174 1.6121 1.9987 7 6 5.6516 1.5101 0.7211 8 6 5.7342 1.3952 -0.6159 9 6 4.3548 1.3452 -1.1132 10 6 3.9219 1.2232 -2.5147 11 8 2.7424 1.0816 -2.7768 12 7 4.8322 1.2686 -3.5076 13 6 4.4461 1.0396 -4.8017 14 1 3.3984 0.9359 -5.0423 15 6 5.4022 0.9464 -5.8059 16 7 6.6419 0.6298 -5.5056 17 14 4.9254 1.2714 -7.5825 18 1 5.1053 2.7136 -7.8875 19 1 5.7879 0.4639 -8.4822 20 1 3.5040 0.8951 -7.7904 21 6 6.2347 1.5626 -3.2027 22 6 6.9691 0.2760 -2.9262 23 8 6.3814 -0.7784 -2.9789 24 8 8.2763 0.3013 -2.6224 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 6.4911 1.5728 1.3975 33 1 6.6371 1.3484 -1.2069 34 1 7.3093 0.5651 -6.2065 35 1 6.6932 2.0673 -4.0530 36 1 6.2883 2.2073 -2.3255 37 1 8.7041 -0.5491 -2.4527 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596026682.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:43 Heat of formation + Delta-G solvation = -57.419259 kcal Electronic energy + Delta-G solvation = -22980.637915 eV Core-core repulsion = 19531.959204 eV Total energy + Delta-G solvation = -3448.678712 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.81356 -39.15269 -37.67454 -35.20377 -34.65418 -34.17194 -31.92319 -30.35602 -29.47376 -27.62174 -25.94462 -24.64695 -21.81619 -21.16127 -20.77455 -20.48263 -17.91229 -17.31281 -16.99005 -16.70410 -15.50992 -15.44509 -14.70079 -14.55282 -14.23608 -14.14457 -14.00310 -13.56977 -13.04496 -12.78733 -12.68689 -12.34470 -12.13224 -11.77947 -11.52897 -11.40717 -11.23567 -10.90590 -10.90031 -10.67083 -10.35989 -10.28569 -10.23014 -10.10860 -9.49826 -8.90310 -8.42105 -8.26924 -7.87463 -7.61491 -6.38317 -3.73157 2.41810 2.89858 3.24976 3.29241 3.34977 3.55285 3.64706 4.04043 4.26142 4.56102 4.94639 5.13049 5.25323 5.29957 5.38025 5.43990 5.65080 5.80030 5.85996 6.02485 6.06092 6.11894 6.15008 6.31590 6.36735 6.45817 6.62504 6.70884 6.75908 6.82212 7.27482 7.40605 7.59980 7.63725 7.86376 8.13002 8.49878 9.17914 9.19865 9.44399 10.03021 10.69340 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.017210 B = 0.007150 C = 0.005484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.568843 B = 3915.110915 C = 5104.796301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.045 4.045 4 C 0.075 3.925 5 N -0.555 5.555 6 H 0.408 0.592 7 C -0.027 4.027 8 C -0.195 4.195 9 C -0.191 4.191 10 C 0.528 3.472 11 O -0.583 6.583 12 N -0.425 5.425 13 C -0.292 4.292 14 H 0.111 0.889 15 C 0.024 3.976 16 N -0.885 5.885 17 Si 0.929 3.071 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.269 1.269 21 C 0.127 3.873 22 C 0.495 3.505 23 O -0.506 6.506 24 O -0.537 6.537 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.162 0.838 33 H 0.154 0.846 34 H 0.270 0.730 35 H 0.129 0.871 36 H 0.096 0.904 37 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.052 3.275 12.204 12.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.083 4.083 4 C -0.042 4.042 5 N -0.151 5.151 6 H 0.243 0.757 7 C -0.155 4.155 8 C -0.220 4.220 9 C -0.201 4.201 10 C 0.319 3.681 11 O -0.468 6.468 12 N -0.143 5.143 13 C -0.419 4.419 14 H 0.129 0.871 15 C -0.177 4.177 16 N -0.526 5.526 17 Si 0.756 3.244 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.194 1.194 21 C 0.001 3.999 22 C 0.336 3.664 23 O -0.392 6.392 24 O -0.349 6.349 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.179 0.821 33 H 0.171 0.829 34 H 0.081 0.919 35 H 0.146 0.854 36 H 0.114 0.886 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -0.760 3.261 11.940 12.401 hybrid contribution 0.567 -0.670 -0.392 0.961 sum -0.193 2.591 11.548 11.837 Atomic orbital electron populations 1.21726 0.95945 1.01275 1.01476 1.21416 0.95346 0.96036 1.02377 1.20199 0.86979 0.98160 1.02998 1.20478 0.93059 1.04989 0.85634 1.41460 1.06142 1.59221 1.08269 0.75691 1.21605 0.85476 1.11938 0.96452 1.22858 0.97042 1.08251 0.93806 1.20783 0.92185 1.13690 0.93460 1.17019 0.85784 0.82273 0.83026 1.90569 1.16730 1.55620 1.83884 1.43275 1.04168 1.60261 1.06605 1.19797 0.95116 1.46147 0.80877 0.87100 1.25181 0.95100 0.96820 1.00602 1.69806 1.03253 1.45271 1.34290 0.85864 0.78754 0.78296 0.81467 1.20334 1.21212 1.19392 1.21563 0.83489 0.91317 1.03550 1.23766 0.78905 0.93195 0.70555 1.90595 1.68206 1.33173 1.47182 1.84546 1.27033 1.40089 1.83195 0.92174 0.93056 0.93526 0.90280 0.93347 0.92524 0.88068 0.82061 0.82889 0.91913 0.85367 0.88642 0.75475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.15 0.37 -1.56 16 2 C -0.11 -1.78 5.91 -26.74 -0.16 -1.94 16 3 C -0.05 -0.71 5.03 -27.88 -0.14 -0.85 16 4 C 0.07 1.31 6.47 -81.48 -0.53 0.79 16 5 N -0.56 -7.60 5.90 -8.87 -0.05 -7.65 16 6 H 0.41 3.90 8.96 -40.82 -0.37 3.54 16 7 C -0.03 -0.39 11.87 -16.85 -0.20 -0.59 16 8 C -0.20 -3.61 8.32 -37.50 -0.31 -3.92 16 9 C -0.19 -4.10 6.10 -102.99 -0.63 -4.73 16 10 C 0.53 13.66 7.60 -12.63 -0.10 13.56 16 11 O -0.58 -16.08 14.23 5.23 0.07 -16.00 16 12 N -0.43 -11.30 2.11 -117.39 -0.25 -11.55 16 13 C -0.29 -8.28 9.47 -14.98 -0.14 -8.42 16 14 H 0.11 3.28 7.27 -52.48 -0.38 2.90 16 15 C 0.02 0.65 4.99 -17.46 -0.09 0.56 16 16 N -0.88 -23.62 8.94 55.50 0.50 -23.12 16 17 Si 0.93 20.99 29.61 -169.99 -5.03 15.96 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 C 0.13 2.96 4.72 -5.19 -0.02 2.93 16 22 C 0.50 11.54 4.10 36.01 0.15 11.68 16 23 O -0.51 -13.87 17.07 -18.75 -0.32 -14.19 16 24 O -0.54 -10.07 13.21 -39.25 -0.52 -10.59 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.55 7.69 -51.93 -0.40 1.15 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.10 1.85 6.95 -51.93 -0.36 1.49 16 32 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.15 2.86 3.51 -52.48 -0.18 2.67 16 34 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.13 3.09 6.08 -51.93 -0.32 2.78 16 36 H 0.10 1.94 4.63 -51.93 -0.24 1.70 16 37 H 0.39 5.68 9.10 45.56 0.41 6.10 16 LS Contribution 308.15 15.07 4.64 4.64 Total: -1.00 -34.83 308.15 -6.26 -41.09 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -3.50 Total: 13.91 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -1.80 Total: 7.50 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.20 Total: -42.32 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -0.76 Total: -40.78 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.83 -6.26 -41.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596026682.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.332 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds