Wall clock time and date at job start Tue Mar 31 2020 02:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47413 * 2 1 4 4 C 1.50699 * 109.47393 * 180.02562 * 3 2 1 5 5 N 1.34700 * 125.90080 * 265.12769 * 4 3 2 6 6 H 0.97001 * 124.81789 * 0.03320 * 5 4 3 7 7 C 1.36428 * 110.36572 * 180.27778 * 5 4 3 8 8 C 1.34448 * 109.08099 * 359.76095 * 7 5 4 9 9 C 1.37839 * 125.90340 * 84.99572 * 4 3 2 10 10 C 1.47185 * 127.01604 * 0.02562 * 9 4 3 11 11 O 1.21658 * 119.99864 * 353.53289 * 10 9 4 12 12 N 1.34779 * 120.00086 * 173.52153 * 10 9 4 13 13 C 1.36975 * 120.00148 * 174.34313 * 12 10 9 14 14 H 1.08004 * 119.99746 * 7.05704 * 13 12 10 15 15 C 1.38966 * 120.00006 * 186.78361 * 13 12 10 16 16 N 1.31421 * 120.00142 * 22.78501 * 15 13 12 17 17 Si 1.86801 * 119.99798 * 202.79091 * 15 13 12 18 18 H 1.48500 * 109.47368 * 89.99861 * 17 15 13 19 19 H 1.48509 * 109.47095 * 209.99801 * 17 15 13 20 20 H 1.48500 * 109.47315 * 329.99437 * 17 15 13 21 21 C 1.46501 * 119.99899 * 354.35060 * 12 10 9 22 22 C 1.50705 * 109.47269 * 89.89993 * 21 12 10 23 23 O 1.20824 * 119.99683 * 0.02562 * 22 21 12 24 24 O 1.34228 * 120.00001 * 179.97438 * 22 21 12 25 25 H 1.09000 * 109.47471 * 59.99832 * 1 2 3 26 26 H 1.09002 * 109.47276 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46930 * 299.99503 * 1 2 3 28 28 H 1.09000 * 109.46995 * 239.99735 * 2 1 3 29 29 H 1.09000 * 109.47471 * 120.00168 * 2 1 3 30 30 H 1.09000 * 109.47256 * 59.99896 * 3 2 1 31 31 H 1.08998 * 109.47093 * 299.99983 * 3 2 1 32 32 H 1.07992 * 125.46224 * 179.76000 * 7 5 4 33 33 H 1.08009 * 126.80670 * 180.02562 * 8 7 5 34 34 H 0.97000 * 119.99956 * 180.02562 * 16 15 13 35 35 H 1.08995 * 109.47089 * 209.90348 * 21 12 10 36 36 H 1.08995 * 109.47087 * 329.90007 * 21 12 10 37 37 H 0.96698 * 117.00028 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3373 1.5349 1.0862 6 1 4.0174 1.6121 1.9987 7 6 5.6516 1.5101 0.7211 8 6 5.7342 1.3952 -0.6159 9 6 4.3548 1.3452 -1.1132 10 6 3.9219 1.2232 -2.5147 11 8 2.7424 1.0816 -2.7768 12 7 4.8322 1.2686 -3.5076 13 6 4.4461 1.0396 -4.8017 14 1 3.3984 0.9359 -5.0423 15 6 5.4022 0.9464 -5.8059 16 7 6.6419 0.6298 -5.5056 17 14 4.9254 1.2714 -7.5825 18 1 5.1053 2.7136 -7.8875 19 1 5.7879 0.4639 -8.4822 20 1 3.5040 0.8951 -7.7904 21 6 6.2347 1.5626 -3.2027 22 6 6.9691 0.2760 -2.9262 23 8 6.3814 -0.7784 -2.9789 24 8 8.2763 0.3013 -2.6224 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 6.4911 1.5728 1.3975 33 1 6.6371 1.3484 -1.2069 34 1 7.3093 0.5651 -6.2065 35 1 6.6932 2.0673 -4.0530 36 1 6.2883 2.2073 -2.3255 37 1 8.7041 -0.5491 -2.4527 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596026682.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:42 Heat of formation + Delta-G solvation = -82.467742 kcal Electronic energy + Delta-G solvation = -22981.724099 eV Core-core repulsion = 19531.959204 eV Total energy + Delta-G solvation = -3449.764895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.22121 -40.91565 -39.54215 -36.99145 -36.35706 -35.68921 -33.85437 -31.88574 -30.74719 -29.46081 -27.50823 -26.31339 -23.45896 -22.66540 -22.34519 -21.83896 -19.59436 -19.01602 -18.67171 -18.38459 -17.32458 -17.22787 -16.39331 -16.11694 -15.94840 -15.74285 -15.53610 -14.81444 -14.72173 -14.41898 -14.16639 -13.73688 -13.68969 -13.47206 -13.41656 -13.04577 -12.62296 -12.46096 -12.22499 -12.19776 -12.12843 -12.07132 -11.96524 -11.55860 -11.43182 -10.87601 -10.36584 -9.87465 -9.64701 -8.99522 -8.41265 -5.84431 0.90098 1.40658 1.42571 1.54476 1.58274 1.81660 2.22858 2.41679 2.47333 2.65714 3.11412 3.35868 3.88018 4.07932 4.20219 4.23127 4.33181 4.42067 4.46023 4.63586 4.70023 4.86425 4.88115 4.96410 4.99265 5.06716 5.12918 5.28061 5.43191 5.46459 5.47958 5.84323 5.97577 5.98888 6.16910 6.48877 6.81556 7.16210 7.38500 7.53347 8.07078 8.64653 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.017210 B = 0.007150 C = 0.005484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.568843 B = 3915.110915 C = 5104.796301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C -0.044 4.044 4 C 0.086 3.914 5 N -0.530 5.530 6 H 0.434 0.566 7 C 0.013 3.987 8 C -0.230 4.230 9 C -0.246 4.246 10 C 0.514 3.486 11 O -0.621 6.621 12 N -0.443 5.443 13 C -0.335 4.335 14 H 0.080 0.920 15 C -0.006 4.006 16 N -0.896 5.896 17 Si 0.994 3.006 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.278 1.278 21 C 0.129 3.871 22 C 0.508 3.492 23 O -0.555 6.555 24 O -0.519 6.519 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.024 0.976 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.215 0.785 33 H 0.146 0.854 34 H 0.275 0.725 35 H 0.116 0.884 36 H 0.125 0.875 37 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.167 4.072 14.998 15.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.148 4.148 3 C -0.082 4.082 4 C -0.033 4.033 5 N -0.127 5.127 6 H 0.275 0.725 7 C -0.116 4.116 8 C -0.254 4.254 9 C -0.256 4.256 10 C 0.307 3.693 11 O -0.509 6.509 12 N -0.161 5.161 13 C -0.462 4.462 14 H 0.098 0.902 15 C -0.206 4.206 16 N -0.536 5.536 17 Si 0.818 3.182 18 H -0.186 1.186 19 H -0.202 1.202 20 H -0.203 1.203 21 C 0.004 3.996 22 C 0.351 3.649 23 O -0.444 6.444 24 O -0.331 6.331 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.086 0.914 32 H 0.232 0.768 33 H 0.164 0.836 34 H 0.085 0.915 35 H 0.134 0.866 36 H 0.142 0.858 37 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 0.416 4.073 14.788 15.344 hybrid contribution 0.276 -0.937 -1.120 1.487 sum 0.692 3.135 13.668 14.040 Atomic orbital electron populations 1.21691 0.93968 1.02069 1.02176 1.21345 0.97115 0.95602 1.00704 1.20208 0.86112 0.98282 1.03591 1.20578 0.93829 1.03089 0.85825 1.41412 1.05586 1.57024 1.08655 0.72520 1.22240 0.86668 1.07233 0.95462 1.22794 0.95432 1.11360 0.95800 1.20647 0.94918 1.18069 0.91941 1.17863 0.85363 0.81022 0.85019 1.90510 1.18232 1.57144 1.85005 1.43400 1.05622 1.60814 1.06261 1.19678 0.94298 1.49319 0.82928 0.90232 1.25942 0.94988 0.95642 1.04014 1.69878 1.03700 1.44587 1.35470 0.84929 0.77851 0.78919 0.76536 1.18593 1.20207 1.20343 1.21621 0.82008 0.91816 1.04152 1.23603 0.79737 0.92271 0.69265 1.90578 1.69540 1.34677 1.49590 1.84462 1.24761 1.41605 1.82265 0.93986 0.92289 0.90228 0.95690 0.91129 0.87803 0.91448 0.76795 0.83635 0.91468 0.86598 0.85784 0.72939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.91 71.98 0.71 -2.88 16 2 C -0.11 -3.41 5.91 30.59 0.18 -3.23 16 3 C -0.04 -1.34 5.03 29.85 0.15 -1.19 16 4 C 0.09 2.90 6.47 42.02 0.27 3.17 16 5 N -0.53 -12.25 5.90 -181.97 -1.07 -13.33 16 6 H 0.43 5.79 8.96 -92.71 -0.83 4.96 16 7 C 0.01 0.31 11.87 83.11 0.99 1.30 16 8 C -0.23 -8.19 8.32 23.62 0.20 -7.99 16 9 C -0.25 -10.72 6.10 -18.81 -0.11 -10.83 16 10 C 0.51 28.31 7.60 86.59 0.66 28.97 16 11 O -0.62 -37.19 14.23 -4.21 -0.06 -37.25 16 12 N -0.44 -24.92 2.11 -643.55 -1.36 -26.27 16 13 C -0.33 -20.22 9.47 84.06 0.80 -19.42 16 14 H 0.08 5.14 7.27 -2.91 -0.02 5.12 16 15 C -0.01 -0.32 4.99 84.93 0.42 0.11 16 16 N -0.90 -48.67 8.94 21.67 0.19 -48.48 16 17 Si 0.99 44.22 29.61 68.60 2.03 46.25 16 18 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 19 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 C 0.13 6.20 4.72 85.63 0.40 6.60 16 22 C 0.51 23.94 4.10 71.24 0.29 24.23 16 23 O -0.55 -31.28 17.07 21.97 0.38 -30.90 16 24 O -0.52 -18.75 13.21 -51.39 -0.68 -19.43 16 25 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.02 1.03 7.69 -2.39 -0.02 1.01 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.07 2.56 6.95 -2.39 -0.02 2.55 16 32 H 0.22 2.98 8.06 -2.91 -0.02 2.95 16 33 H 0.15 5.28 3.51 -2.91 -0.01 5.27 16 34 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 35 H 0.12 5.76 6.08 -2.39 -0.01 5.74 16 36 H 0.13 5.13 4.63 -2.39 -0.01 5.12 16 37 H 0.41 11.24 9.10 -74.06 -0.67 10.56 16 Total: -1.00 -83.33 308.15 4.02 -79.31 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: -0.37 Total: 31.25 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 4.96 Total: 18.84 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -2.24 Total: -88.08 kcal Atomic # 8 Polarization: -87.22 SS G_CDS: -0.36 Total: -87.58 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -83.33 4.02 -79.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596026682.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.155 kcal (2) G-P(sol) polarization free energy of solvation -83.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds